Xenopus tropicalis (tropical clawed frog): 549027
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Entry
549027 CDS
T01011
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
549027 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549027 (cnot10)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
549027 (cnot10)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
ARM_TT21
TPR_2
TPR_12
SCAF11-like_C
TPR_7
TPR_MalT
DUF6058
Myc-LZ
Motif
Other DBs
NCBI-GeneID:
549027
NCBI-ProteinID:
NP_001016273
Xenbase:
XB-GENE-5755016
UniProt:
Q28FZ8
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Position
6:50190214..50259092
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AA seq
510 aa
AA seq
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MAADKAGEQGAEKHEGSANCSGISDQEKELSRSALQAFTAGNYEACLQHLGELKEINKDD
YKVILNSAVAEFYKSDQTTSDLLKQTLNQLRNEVHSAVDEMDSLDDVENSMLYYNQAVIL
YYLRQHMEAISIGEKLYQFIESFEEKFAHAVCFLLVDLYLLTFQTEKALHLLVVLEKMIL
QSIVGQGYHRKIVLASQSVQNLLYNDGESSAIPVASMEFAAICLRNALLLLPEDQFEVKQ
ENGSKASSQTGNTDSSGESSDVCSNKNHEGDKFIPAPPSSPLRRQEVENLRCSVLACSAY
VALALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVTD
VSLGVSSNEQEQGSDKGENEPMESVGKQMPQCYPSSVTSARTMMLFNLGSAYCLRSEYDK
ARKCLHQAASMIHPKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSIRMMSDLRKK
PLFQTMHQPMQPMQPMQPIQMPAFTAVQRK
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaaagcaggagaacagggagctgaaaaacacgagggctctgctaattgc
tcaggcatttctgaccaggagaaggaattgtccagaagtgcattacaggcatttacagct
ggtaattatgaagcctgtctacagcatctaggagaacttaaagaaatcaacaaagatgat
tataaagtaattctgaattctgcagtagctgagttttataagagtgaccagacaacatct
gacctgctgaagcaaacgcttaaccagttaaggaacgaggttcattctgctgttgatgaa
atggatagcttagatgatgtggagaacagtatgttgtattacaatcaggctgtcatcttg
tattatctgcgtcagcacatggaagctatttcaattggagaaaaactttatcagtttatt
gaatcatttgaagagaaatttgcgcatgctgtatgctttctgcttgtagacttatatctt
ctgacattccagactgaaaaagccttgcacctcttggtggttcttgaaaaaatgatttta
cagtccattgtaggccaaggctatcaccgaaaaattgttctagcttctcagtcagttcag
aatcttctttacaatgatggagagtcttcagctattcctgttgctagcatggagtttgct
gcaatatgtctgagaaatgcattgcttcttttgccagaagaccagtttgaagtaaagcaa
gaaaatggttccaaggctagtagtcaaacaggcaatacagactctagcggggagagcagt
gatgtgtgcagcaataaaaaccacgaaggggataaattcattccagctccaccttcatct
cccctaaggaggcaagaagtagaaaacctaaggtgttctgttcttgcttgcagtgcctat
gttgcccttgctttgggtgataaccttatggcactgaaccatgcagaaaaacttctacag
cagccacggttgtcaggatcccttaagttcctgggccatttatatgctgccgaagctctc
atctccttagacaggatttcggatgccatcactcatctgaaccctgagaatgtcacagat
gtgtctctaggggtctcttccaatgagcaggagcaaggttctgacaaaggagaaaatgag
cccatggaatctgttggtaaacagatgccacagtgttacccaagttcagtcacttctgct
cgaactatgatgctgtttaatctcgggagtgcttactgtttacgaagcgaatatgataaa
gcacgcaagtgtctgcaccaggctgcctccatgatccaccctaaagaaatcccaccagag
gcaatcctgcttgcagtgtatcttgagctgcagaatggcaatacccagctggccttgcag
atcatcaaaaggaatcagcttctcccgtccatcagaatgatgtcagatcttcgaaagaag
ccattattccagacaatgcatcagccaatgcagccaatgcagccaatgcagccaattcag
atgccagcttttactgctgttcagagaaaatga
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