Xenopus tropicalis (tropical clawed frog): 549117
Help
Entry
549117 CDS
T01011
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
xtr03410
Base excision repair
xtr03420
Nucleotide excision repair
xtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
549117 (rfc4)
03410 Base excision repair
549117 (rfc4)
03420 Nucleotide excision repair
549117 (rfc4)
03430 Mismatch repair
549117 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtr03032
]
549117 (rfc4)
03036 Chromosome and associated proteins [BR:
xtr03036
]
549117 (rfc4)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
549117 (rfc4)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
549117 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
549117 (rfc4)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
549117 (rfc4)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
549117 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
549117 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
AAA_lid_RFC1
DNA_pol3_delta2
AAA_assoc_2
Rad17
AAA_22
AAA_16
AAA_11
AAA_30
DUF815
Gp44_lid
Mg_chelatase
AAA_24
AAA_28
TIP49_C
RuvB_N
SLFN-g3_helicase
AAA_19
AAA_5
DNAX_ATPase_lid
Kinesin
AAA_7
ResIII
Motif
Other DBs
NCBI-GeneID:
549117
NCBI-ProteinID:
NP_001016363
Xenbase:
XB-GENE-955724
UniProt:
Q28GP1
LinkDB
All DBs
Position
5:105886997..105908331
Genome browser
AA seq
360 aa
AA seq
DB search
MQAFLKGGTSISTKPVKDKASASGTGSTGESKKQKPVPWVEKYRPKCVDEVAFQEEVVAV
LKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE
KVKNFAQLTVGGTRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN
YVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVKITNEAISCLVEVSEGDLRKA
ITFLQSATRLTGGKEITEEIVTEIAGVVPKETLDCVLVACQSGSFEKLETVVKNLINNGH
AATQLVNQLHDVILERGDLTDKQKAFITEKLAEVDKCLADGADEYLQMLGLFAVVMQQMT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttctaaaaggaggaacatctatcagcaccaagcctgtgaaagataaagca
tctgcatctggcacagggagcaccggggaaagcaaaaaacagaagcctgttccatgggtg
gaaaaataccgacccaaatgtgtagatgaggttgcctttcaagaagaagttgttgctgta
ctaaaaaaatcactggaaggtgcagatctcccaaacctattattttatggcccacctggc
actggaaaaacatcaacaattttggcagcatccagggaactctatgggcctgaattgttt
cgccagcgagttttggagctgaatgcatctgatgaaagggggatacaagtggtacgggaa
aaagttaaaaattttgctcagctcacagttggagggacacgttctgatggtaaaccgtgt
cccccttttaagattgtaattttggatgaagcagattccatgacatcagctgcacaggct
gccctcaggcgcaccatggaaaaggagtccaaaacaactcggttttgtctcatatgcaat
tacgtcagcagaataattgaacctttaacatctcgatgttcaaaatttcgtttcaaaccc
ctggctgataaaatacagactcagcgactactgagtatttgtgaaaaagaaaatgtgaaa
attacaaatgaggcaataagttgtttggttgaagtgtctgaaggagacttgcgaaaagcc
ataacattccttcagagtgctacaaggttaactggaggaaaggaaataacagaggaaata
gtgacagaaatagctggggtagtccctaaagaaacacttgattgtgtattagtggcctgt
cagagtggttcttttgagaagctggaaactgttgtcaaaaatctgataaacaatggacat
gcagccacacagcttgtaaaccagctccatgatgttatattagagagaggggaccttaca
gacaagcagaaagcatttattacagaaaaacttgcagaagttgacaaatgtttggcagat
ggagccgatgaatacctgcaaatgctgggtcttttcgcagttgtaatgcaacaaatgact
taa
DBGET
integrated database retrieval system
