Yersinia aleksiciae: ACZ76_07475
Help
Entry
ACZ76_07475 CDS
T03994
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yak
Yersinia aleksiciae
Pathway
yak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACZ76_07475 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yak03021
]
ACZ76_07475 (rpoB)
03400 DNA repair and recombination proteins [BR:
yak03400
]
ACZ76_07475 (rpoB)
Enzymes [BR:
yak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACZ76_07475 (rpoB)
Transcription machinery [BR:
yak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACZ76_07475 (rpoB)
DNA repair and recombination proteins [BR:
yak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACZ76_07475 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
AKP33387
UniProt:
A0A0T9V0F7
LinkDB
All DBs
Position
complement(1638763..1642791)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTTQILDLFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSRDQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcccgaagggcagcacggcctagaagcagcattccgttctgtttttccaatccag
agctacagcggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtattt
gacgtcaaagagtgccagatccgtggtgtgacttattccgcaccgctgcgcgttaagctg
cgtctggtaatctatgagcgcgaagctccggaaggtacggttaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgaccgagaacggtacctttgtcattaacggt
actgagagggttatcgtatctcagctgcatcgtagtcctggcgtattctttgacagtgat
aagggtaaaacccattcatcgggtaaagtgctgtataacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagttcgacccgaaagacaacctgtttgtccgtattgaccgt
cgtcgtaaactgcctgcaaccatcattctgcgtgcattgaatttcaccactacacagatc
ctggatctgttctttgacaaagtggtttttgagattcgtgacaacaagctgcagatggag
ttggttccagagcgtctgcgcggtgaaacggcatcctttgatattgaagcgaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgccacattcgtcagcttgaaaaagac
ggcattgatcgcatcgaagttccggttgaatacattgctggcaaagtggtcgcaaaagac
tacatcgatgagaacactggcgaactgatctgtgcagccaacatggagctgtcactggat
ctgcttgctaagctgagccagtctggtcacaagcaaatcgaaacattgttcaccaacgac
ctggatcacggtgcttatatttccgagaccctgcgtgttgacccaaccagcgatcgtctg
agcgctctggttgagatttaccgcatgatgcgtcctggtgagccaccaacacgtgaagca
gctgaaaatctgtttgagaacctgttcttctctgaagaccgctacgatttgtctgcggtt
ggccggatgaagttcaaccgttcactgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagaagacatcacagaagtgatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgtaggtctggttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgacctcgacactctaatgcctcaggacatgatcaacgccaagccaatttcggcc
gcggtgaaagagttctttggttccagccagttgtcacaatttatggaccagaacaacccg
ctgtctgaaatcacgcataagcgtcgtatttctgcattgggcccgggtggtttgacccgt
gaacgtgctggctttgaagttcgagacgttcatccgactcactacggtcgtgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaatgagtatggtttcctggaaactccatatcgtcgtgtacgtgacggtgtggtgact
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgatgaaggtcgcttcttggaagacttggtcacttgtcgtagcaaaggc
gaatcaagcctgttcagccgcgaccaggttgactacatggacgtatctacccagcagatc
gtatccgttggtgcttctctgattccattcctggaacacgatgacgccaaccgtgccttg
atgggcgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgctggta
ggtactggtatggaacgtgcagtagcggttgactcaggggtaacctctgtagccaaacgt
ggcggtactgttcagtacgtagatgcatcccgtatcgttatcaaagttaacgaagacgaa
atgtatccgggcgaagcaggcattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgcatcaatcagatgccgtgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccatcaacagacttgggcgaactggcattgggtcagaacatg
cgcgtagccttcatgccttggaacggttacaacttcgaagactccatcttagtctccgag
cgcgtggtgcaagaagatcgcttcacgactatccacattcaggaattggcatgtgtgtct
cgcgacaccaagttagggcctgaagagatcaccgccgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtgtatatcggtgctgaagtgactggcggc
gacattctggtaggtaaagtgacacctaaaggtgaaacccaactgaccccagaagagaag
ctgttacgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacggttattgacgtgcaggtctttactcgcgatggcgtagaa
aaagacaagcgtgcgttggaaatcgaagagatgcaactgaagcaggctaagaaagacctg
actgaagagttgcagatcctggaagcgggcctgtttgcacgtatccatgcagtactggtt
tctggtggcatcgaagctgacaagctgagcaagttaccacgtgatcgctggctcgaactg
ggcctgaccgacgaagacaagcaaaaccagctggaacagttggcagagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaagatcacccaaggtgat
gatttagcaccaggcgtgctgaagatcgtcaaggtgtatctggccgttaaacgtcagatt
caaccgggtgacaagatggccggtcgtcacggtaacaaaggtgttatctccaagattaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattttggaaacccacttagggatggca
gcgaaaggcatcggcgagaaaatcaacgccatgctgaagaagcaggaagaagttgccaaa
ctgcgtgagttcatccagaaagcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcacctttaccgatgatgaagtactgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcaactccagtcttcgatggcgcgacagagaaagagatcaaggaactgttacag
ctgggtggcctgccaacttctggtcagattactctgtttgacggccgtaccggtgagcag
ttcgagcgccaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaaaatgcatgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcgtacacattgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa
DBGET
integrated database retrieval system
