Yersinia aldovae: AT01_1971
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Entry
AT01_1971 CDS
T03605
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yal
Yersinia aldovae
Pathway
yal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AT01_1971 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yal03021
]
AT01_1971 (rpoD)
Transcription machinery [BR:
yal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AT01_1971 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJJ62073
LinkDB
All DBs
Position
2123406..2125241
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLINGFVDPNAEEDIAPTA
THVGSELSTEEMDEDDKEEDEEEEEDDNSIDPELARQKFSELRDQYENTRLAIKKNGRSH
ASAAAEILNLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKNF
VTLFASNETSDTWFAAAIAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcgcct
gatgccgatgatttgatgctggccgagaataccacggataccgacgatgacgcggctgaa
gctgcggcacaggtgttgtccagtgttgaatccgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgcgaaatgggcaccgttgagctattgacgcgtgaaggcgagattgat
attgccaaacgtatcgaagagggtatcaaccaggttcagtgctctgttgctgaataccct
gaagccattacttatctgttggaacaatatgatcgcgtcgaagcgggtgaagcccgttta
tctgacctgatcaatggctttgtcgatcccaatgccgaagaagatattgcgccgacagcg
actcacgttggttctgaattatccactgaagaaatggatgaagacgacaaagaagaagac
gaagaagaagaagaagacgacaacagcatcgatcctgagctggcacgtcagaaattcagt
gaattgcgtgaccagtatgaaaacacacgcttggcaatcaagaaaaatggccgcagccac
gccagtgctgcagcagagattctgaatctttctgaggtgttcaaacagttccgtttggta
ccgaagcagttcgactatctggtcaataacatgcgtgccatgatggatcgcgttcgtacg
caagaacgtatcatcatgaagctgtgtgttgagcagtgtaaaatgccgaagaaaaacttc
gttaccctgttcgccagcaatgaaaccagtgatacctggttcgcagcagcgatcgcgatg
ggtaaaccgtggtcagaaaagctgaaagatgtgtcggatgatgtacaacgtagcttgcag
aaactgcgccagatcgaagaagaaaccggtctgaccatcgagcaagtaaaagacatcaac
cgccgtatgtctatcggtgaagcgaaagcgcgtcgtgccaagaaagagatggttgaggct
aacctgcgtctggttatctctattgcgaaaaaatacactaaccgcggtttgcaattcctt
gatttgattcaggaaggtaatatcggtttgatgaaagcagtagataaatttgaataccgc
cgtggttataagttctcaacttatgcaacgtggtggattcgtcaggctatcacccgatct
atcgcggaccaggcacgtaccatccgtattccggtacatatgattgagacaattaacaaa
ctcaaccgtatctcacgccagatgctgcaagaaatgggccgtgaaccaacgccggaagag
ctggctgaacgcatgttgatgccggaagacaagattcgtaaagtgctgaagatcgccaaa
gagcctatctcgatggagacgccgatcggtgatgatgaagattcacatctgggcgatttc
atcgaagataccacgctggagctgccgctggactctgctacctctgagagcctgcgttct
gcgactcacgacgtgttggctggcctgaccgcgcgtgaagcgaaagttctgcgtatgcgt
ttcggtattgatatgaacactgaccacactctggaagaagtgggtaagcagttcgacgtc
acccgtgagcgtattcgtcagatcgaagcgaaagcattacgtaaactgcgccacccaagc
cgttctgaagtgctgcgcagcttcctcgacgattaa
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