Yersinia aldovae: AT01_3253
Help
Entry
AT01_3253 CDS
T03605
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
yal
Yersinia aldovae
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yal03016
]
AT01_3253
Enzymes [BR:
yal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AT01_3253
Transfer RNA biogenesis [BR:
yal03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AT01_3253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AJJ64339
LinkDB
All DBs
Position
complement(3570186..3570752)
Genome browser
AA seq
188 aa
AA seq
DB search
MINTVDKTSFRRLFFALTLPDALQQNMVQWRADNFPPQAGRPIAAANLHLTLAFLGEVSD
AKAQVLQQQAGRISQSGFNVTLDDIGHWPGSGVVWLGCKNPPRGLLQLAQLLRSQAARSG
CYQTPLPFHPHVTLFRGAIRPVAIPARTTNEIFPVNSFSLYESVFARGRTRYKIVQSWPL
AAREEKEI
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgattaataccgttgataaaactagctttcggcgtctgttttttgccctgacactacct
gatgccttgcaacaaaatatggtgcaatggcgagcagataacttcccgccacaagctggc
cgccctattgctgcggctaaccttcacctgacactggcgtttctcggtgaggtcagtgac
gcgaaagcacaggtattgcaacaacaagccgggcgcatcagtcagtctggttttaatgtc
acattggatgatatcggccactggcccggctccggcgtggtgtggttgggttgtaaaaat
cccccgcgcggactgttacagttggctcagttactgcgttcgcaagcagcgcgcagtggc
tgttaccaaacaccactgccttttcatccccatgtcaccttattccgcggagctattcgc
cccgtcgccattccggccagaaccacaaatgaaattttccctgtgaattctttttcactg
tatgaatccgtcttcgcccgaggccgcacccgctataaaatagtgcaaagttggccgctg
gctgcccgtgaggaaaaggaaatttaa
DBGET
integrated database retrieval system
