Ylistrum balloti (Ballot's saucer scallop): 132544606
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Entry
132544606 CDS
T11245
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132544606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132544606
Enzymes [BR:
yba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132544606
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132544606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
GATase_5
Motif
Other DBs
NCBI-GeneID:
132544606
NCBI-ProteinID:
XP_060064208
LinkDB
All DBs
Position
Unknown
AA seq
609 aa
AA seq
DB search
MEITRKNFKQMLNFVTESINDADFLSVDGEFTGLDAKNGGHAMPFDTPEVRYQRVRQGTC
DFLLLQFGVCTFHYNEEKSLYKARPFNFYIFPRPYSRSGPDVRFLCQSSSIEFLVSQGFD
FNKAFKDGISYLTPGDEANLREALHQKHQQFSQFSSPAFVTPDGVSQGTSKGPVSIPDEQ
KEFIKEICEKVSDFVEKSTEDKLSLPSCNGFQRKLIYQSLRAQFLSGIHLETQTDEKKER
HIVVTRIKSEEDMKRREAEKQAAEVTDLDNAVGFTKVIRTISQSGKLVVGHNMMLDLIHI
LHQFFYPLPESYEEFKDMSMSAFPKLLDTKLMASTSPFKDRIMNTGLSDLQKILEFKPFQ
KPQVEIEEKFNKYTTEKGPLHEAGYDAYLTGICFICMSNFLGTFQNPSQNIVPPSSPLIQ
PFINKLFLMRVHDIPYLNLAGKDLTPNRDHVFHLTFPKEWKTSDLIHLFSPFGGSQIFWL
DDTSAFASLYLKEEAQKVLQNLCKSGTVYTIKTYHQYQHSESGNQALSRKRPTPSTENNV
PNKKRKSLNVEAAPFVSRSITPPIPEENTENMDEPNGKDANNIKAMETESSNVKDKKKEE
QMFVEPEVW
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggagatcacacgaaaaaattttaaacagatgctgaattttgtcacagagtccatcaat
gatgctgactttttgtctgtcgatggggaattcacagggttggatgcaaaaaatggaggt
catgccatgccatttgatacaccagaagtacgctaccagcgagtgagacagggtacatgt
gatttcctacttctgcagtttggtgtttgtacctttcattataatgaagaaaaatcattg
tataaagccaggccatttaatttctacattttccctcgtccttattcacgatccggtcct
gatgtccgcttcttgtgtcagagttcaagtatagagtttctggtatctcaaggatttgat
tttaacaaggcctttaaagatggtatatcgtacctgacccctggtgacgaagctaatctt
cgagaggcattacatcagaaacaccagcaattctcacagttctcgtctccagcttttgtc
actccagatggggtctctcaggggacatcaaaagggccagtcagcattccagatgaacag
aaggaatttatcaaagaaatttgtgaaaaagtttctgattttgttgaaaaatctactgag
gacaaactgagtctaccatcctgtaatgggttccagagaaaattgatttaccagtcttta
cgagctcagtttctatcaggtatacacttggagacacagacagacgagaagaaggaacgg
cacattgttgtaactagaataaagagtgaggaagacatgaagagacgagaggctgagaaa
caggctgcagaggtgactgatttagacaatgctgttggcttcaccaaggtcatccgtaca
atatctcaatctggtaagctggtagtaggacacaacatgatgctggacctcattcatata
ctgcaccagttcttctacccactaccagagagttatgaagagttcaaggatatgtccatg
tctgcatttcctaaattgttagacactaaacttatggctagtacaagtcccttcaaggac
agaatcatgaatacaggtctgtctgatctacagaagatcctggagttcaaacccttccag
aagcctcaggttgaaatagaagaaaagttcaacaaatatacaacagagaagggaccgctc
catgaagcaggttatgatgcttacctgactggaatatgtttcatctgcatgtctaacttc
ttaggtactttccagaatccgtcccaaaatattgttccaccttcctcgccactcatccag
ccattcataaacaaactcttcctgatgcgagttcatgatatcccttatcttaacctagct
ggcaaggatttgactccaaacagggaccatgtattccacttaacatttcctaaagagtgg
aagacaagcgacctcatacacttattctctccctttggtggctcacagatattctggcta
gatgacacatcagcattcgcatcactttatttgaaagaagaggcacaaaaagttttgcag
aacctgtgtaaaagcggaacagtatacactatcaagacctaccatcaataccagcacagt
gagagtggaaatcaagcgctgtcacgcaaacgaccgacacccagcacagaaaataacgtc
ccaaataagaaaagaaagtctctaaatgttgaagctgccccctttgtatctaggtcaatc
acgcctccaataccagaggaaaatacagagaacatggatgaaccaaatggaaaggatgca
aacaacattaaagctatggaaacagaaagtagcaatgttaaagataaaaagaaagaggag
caaatgtttgtggaaccagaggtttggtga
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