Ylistrum balloti (Ballot's saucer scallop): 132553962
Help
Entry
132553962 CDS
T11245
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132553962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132553962
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132553962
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132553962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
7TMR-HDED
MIF4G
DUF4820
Motif
Other DBs
NCBI-GeneID:
132553962
NCBI-ProteinID:
XP_060074242
LinkDB
All DBs
Position
Unknown
AA seq
2433 aa
AA seq
DB search
MNLDSLSFALAEISYSVSNLTKKNFKSSVGEISHLVLQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGSLLSKPNFVSTLCYAIDNPLHHQKCLRPSVHLFPQISRVLK
LTRVQEVVFGLALINSSSAETRPLAIQFVKQKLPDLIRSYVDAVDSGLRQEGGLQDVDVE
ILHLLLNQIQNNKDNFGLGAEQREAFYRTLRKDFPHNRVPVILGPLLYPESEDIAIPKLS
DTTNMPKSVLDASLADMVLEAGYSCTMSVEECRGKLLQFGIREITPASVAKVLGMMARTP
SGLSESGHNQAQMNAAPGSGWPDMGEKADKPGVNTWNVEVFVSVIQDLAPHFNWRDVVLQ
LDHSGFMVVNKKGLRLLVQGLIRGLQEVFPVEFVYRPWKNTEGQLSFIKQALRNPDVFCF
GDYPCHTVVIDILKAAPDDENRDIGTWKSLDLVETLLRLSEAGYYQQVSELFKFPIQNCP
DMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQGHSSTIRTLIMHS
MAEWYMRGEQHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWL
SDKIREHGEPFIQTSVNFLKRRCPQLMGGPAKDEQLPQAKSQMLPTDTIATMLSCLQICA
SQVSQELSEAIMTMVTNASMILNKARPAPPVPKTNLQPTLLNQPTTQSNLLDNLDNANTL
GIPKSWGMSGVNSGFPQNLTSLSTTATPGSPAKAAGFQPISQPSGFGAMQNITNQLQSLS
MSNPMGVPPRNPGVNTLGSISSQAVIKQQQQQQVQQQQQQQQQQQQQQQQQQQQQQQQQL
RAGGMSAQVSGEMSTIFPDMSQQFTREVEDEANSYFQRIYNQHPHPTMSIDEVLDMLKRF
KDSPNRREKDVYECMLRNLFEEYRFFPQYPERELHITAVLFGGIIEKGLATYMALGIALR
YVLEALKKQLNSKMYYFGIAALDRFKTRLKDYPQYCQHLAAIPHFQQFPQHLIEFVEYGA
RSQEPPVPSISRTLTPTAVGGVSFTGTAPTVTPTPTSTAVTSVEVPMAPTLTQAPAPAPT
PAAVTTTTTATTTVVTTGTTKPSSLPKPSIASATNIDTLLAGQGNEESSIPPESIQDKVF
FIFNNLSMANMNQKAEELRKEITEDYYAWSAQYLVMKRASIEPNFHTLYANFLDALQIPD
ITQMVIRETFRNIKVLLRSDKGDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKAL
LYEAYHKGARELLYVVPFTAKVLESCAKSKVFRPPNPWTIGIMNVLAELHQEPDLKLNLK
FEIEVLCKTLTLDLNELNPSTYLKDTSRISTTEPQLSNMVKNLPPPPMPTPQPEQPLVQL
TAPVPTPPVSTTTVASTVTTTTPNMPPRPQFAFDEIVTANLNSIGAHIVTSDQIPLFQGN
PNLKQLVKIALEKSIQELLPPVVERTIKITLQTCEQIIKKDFALDPEENRMRAAAHHMVR
NMTAGLALITSREPLYLSINNNLKSAFMATLRVNEGATPAQKEMIEQAAQLVAQENTELA
CVFIQKTAVEKAIPEIDKRLATEFDLRKHARSEGRRYCDPVILTYQAERMPEQIRLKVGG
VTAGQIAVYEEFAQNIPGFQPTSDPSLPPGVPKPVATYSIDDLTQILDRIRRDMEQYMQQ
LMGIPTSNPLMVQLHSLLEAVLLARNNREIVTSIALLQKAVEGLLDHCTYSQLPSDQDLL
VRFRDCNLMVLKSLQDQRAYGPQWTNKQVTRCLIEVGGDNKYNADAVDCLIRSGLVNMQQ
YDLYLVQLMENGLNYLGVMFAMQLVQRYCVDDKANSPVTEVDFANTIEALTQVNSRNQRP
PEGLAQMLEGLHPPVDFSLLERAIGGPTSMMQSGISQARELDDPPGLHEKTEFLLREWVN
MYHSPAAGRDSTKAFTAFVQQMHQQGILKTDDLITRFFRLCTEMCVDLCYRALGEQSQNP
ALVRAKCFHTLDAFVRLIALLIKHSGDTANTVTKINLLNKVLGIVAGVLLQDHAVRHSDF
QQLPYHRIFIMLFIELNAPEHILENINFQVLTAFCNTFHVLRPAKAPGFAYAWLELLSHR
VFIGRLLALTPQQKGWGMYAQLLLDLFKFLTPFLRNAELTKPTQLLYKGTLRVLLVLLHD
FPEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLADIAHPPRIL
TNFAKMIEPASFKKDLDSYLKTRSPVTFLSDLRSNLQLNEPGMRYNIPLMNALVLYVGTQ
SIQHIHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLTSISNQLRYPNSHTYYFS
CTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFVHC
APEIEKLFESVARSCMQPKTGQTLRETETNEIH
NT seq
7302 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcatttgccttggcagaaataagctattcagtatccaattta
acaaagaagaatttcaaatcgagcgttggagaaataagtcatcttgtcctgcaacacgga
gctgaagcagataggcatttgtttcggtgccttttctctcatgtagacttcagcggtgat
ggtagaagcagtggaaaagactttcaccagacacagtttttgatacaggagtttggttct
ttgctgagcaaaccaaattttgtgtcaacattgtgttacgccattgataatccattacac
catcaaaagtgtttacgtccatcggtgcacctcttcccacaaattagtcgggtcctgaag
ctgacccgtgtacaagaagtagtgtttggattagcattgataaactcttcaagtgctgag
actcgtcctcttgccatacagtttgtcaaacagaaactgcctgatctcattagatcttat
gttgatgcagtagactcaggattgcgtcaggaaggcggcctgcaggacgtggacgttgaa
atactccaccttctgcttaaccaaatccagaacaacaaggacaactttggacttggtgcg
gaacaaagggaggctttctatagaacacttagaaaagattttccacataaccgtgttccg
gtcatattgggaccattgctctacccagagtctgaggacatagcaataccaaagctctcg
gatactacaaacatgccgaaatctgtgcttgatgcatcactggcagacatggttctggag
gctgggtacagctgtaccatgagtgttgaagaatgccgtgggaagctccttcagtttggt
atcagggagataactccggcatctgttgccaaagtgttgggaatgatggcaagaacacca
tctgggttgtcagaatcgggtcacaaccaggcccagatgaatgctgcacctggcagtggc
tggccagatatgggagaaaaggcagacaagcccggtgtgaacacctggaatgttgaagtg
tttgtcagtgtaattcaggatctggcacctcacttcaactggagagatgtagtactacaa
cttgatcactcagggttcatggtggtcaacaaaaaaggactacgtcttctggtgcaggga
ctgatacgaggactccaggaagtatttcctgttgagtttgtatatcgaccatggaagaac
acagagggacagttgtcattcatcaaacaagcattgcgtaacccagatgtgttttgcttc
ggtgactacccttgtcacacagtggtcatagacatcttgaaagctgctccagacgatgaa
aaccgcgacattggaacatggaaatcactggaccttgtggaaactttactgcgactgtct
gaggcaggatattaccagcaggtgtcagaactcttcaagttccctattcagaattgtcca
gacatgctagttctggctctgcttcaaattacacctacatggaacacactcaaacaggag
ctgatatctacacttatgcccatcttcttaggaaatcatccaaactcagctgttgttctt
cattatgcttggcattgtcagggtcactccagcacaatccgaaccctgatcatgcattca
atggcagagtggtacatgcgtggagaacaacatgatcagacacgactctcaaggatactg
gatgttgcacaagatctcaaggccctttctatgctgttgaatgcaacaccatttgccttt
gttattgaccttgcatgtttggcttcacgtcgtgaatatctgaagttggacaagtggctg
tcagacaaaatcagagaacatggggagccattcatacagacatcggtgaacttcttgaag
cgacggtgtccacagttaatgggtggtccagccaaagatgaacaactaccacaagcaaag
agccagatgttaccaacagatactatagccactatgttgtcctgcctgcagatctgtgca
agccaagtgtcccaagaattatccgaggccattatgactatggttaccaatgctagtatg
atcctgaacaaagccagaccagctccacctgtaccgaaaaccaaccttcagcccactcta
cttaaccaaccaaccacacagtcaaacctgctggacaacttggacaatgccaatacatta
ggaattcctaaatcatggggcatgtcgggtgttaactcgggtttcccccaaaacctcact
tctctcagcaccacagctacacctggatctccggcgaaggcagctggtttccaaccaatc
tcacaaccaagtggttttggagccatgcagaacatcacaaaccagcttcaaagtctgtct
atgtctaatcccatgggagtaccgcccaggaatccgggtgtaaacaccttggggagtata
agttcccaggctgtgatcaaacaacaacagcaacaacaggtacagcagcagcagcagcag
cagcaacaacaacagcagcagcagcagcagcagcaacaacaacaacagcaacaacaacta
cgtgcaggagggatgtcagcacaggttagtggcgagatgtccactatattcccagacatg
tcacagcaattcacacgggaggttgaggatgaggcgaactcatatttccaaaggatttac
aatcagcatcctcacccaacaatgtctattgatgaggtccttgacatgctgaaaagattc
aaggactcgccaaataggagggagaaggatgtgtatgagtgtatgctacgtaatttattt
gaggagtacagattcttcccccagtatcctgagagagagcttcatatcacagctgtttta
tttggagggatcattgaaaagggactagctacctacatggcacttggcattgccttacgg
tatgtgctggaggctttgaagaaacagctcaattctaaaatgtattactttggaattgct
gcattggatcgcttcaaaacaagattgaaggactatccacagtactgtcaacatcttgct
gccattcctcacttccagcagtttccacaacatcttattgagtttgtggaatatggggcc
agatcacaagaacctccagttccttccatatcacgaactttaaccccaacagcagttggt
ggggtatcttttacaggaactgcaccgacagtaacccctacaccaaccagtactgcagtg
acaagtgttgaagtaccaatggcaccaacactaacccaagcacctgctccagcccctacg
cctgctgctgttaccacaacaaccacagctacaacaacagtggttaccacgggcaccaca
aaaccaagcagcttgcccaagccgtccattgcgagtgctaccaacatcgacaccctgttg
gctggtcagggtaatgaggagtcttcaatacctcccgagtccattcaggacaaagttttc
ttcatctttaacaatctctcaatggccaacatgaaccagaaggcagaagagttaaggaag
gagatcacagaggattactatgcctggtcagctcagtacctggtgatgaagagagcaagc
attgaaccaaacttccataccctgtatgccaacttcttagatgcactgcagattcctgat
atcactcaaatggtcattagggaaacattcaggaacatcaaggtgttgttgagaagtgac
aaaggtgatgccaacttctctgacagaactctgctcaagaaccttggtcattggcttggc
atgttaacattggcaaagaacaaacccattctgcagatagacatagatctgaaggctctg
ctgtatgaggcctaccacaaaggagccagggaactgctctatgttgtacccttcacagcc
aaggtgctggaatcgtgtgccaaaagcaaggtgttcaggccaccaaatccctggactatt
ggtataatgaatgtactagcagaactccaccaggagccagatctgaagctcaacctcaag
tttgagatagaagtgctatgtaaaacattgacactggatcttaatgagctgaatcctagt
acatacctgaaggacacatcccgaatatctacaacagagccccagctgtctaacatggtt
aagaacctgcctccaccacccatgcccacaccacagcctgagcaacctttggtgcagctc
acggctcccgtcccaactcccccagtatctacaacaactgtcgcctctacagtcactacg
acaacacccaatatgccacccaggccacagtttgcttttgacgaaattgtgacagcaaat
ctgaacagtattggagctcacattgtgacaagtgaccagattccgttgtttcaaggaaac
cctaatcttaagcagctagtgaagatagcattagaaaagtccatccaggaacttctgccc
cctgtggtagaacgtaccatcaaaatcacacttcagacctgtgaacagatcatcaaaaag
gactttgcccttgaccctgaggagaaccgcatgcgtgcagcagcccaccacatggtacgc
aatatgacagctggtctggctctaatcacatcacgtgaacccctctacctcagcatcaac
aacaacctcaagagtgccttcatggcaacgcttagggtcaatgagggtgctacaccagca
cagaaggagatgattgaacaggctgcccaacttgtggcacaggaaaacacagaactagcc
tgtgtgttcatacaaaagacagcagtggagaaggcaataccggagatagataaacgtctg
gctaccgaatttgatctccgcaaacatgcaaggtctgagggtcgaaggtactgtgaccca
gtcatcctgacctaccaggctgaacgcatgccagaacaaatccgactcaaggttggtggg
gtgactgcaggacagattgctgtgtatgaggaatttgcccagaacatcccaggatttcag
cctacaagtgacccatcacttcctccaggagttccaaaaccagtagctacctattctatt
gatgacttgacccagattctagatcgtatcagacgagacatggagcaatatatgcaacag
ttgatgggaatccccaccagtaacccgttgatggtccagcttcacagcctgctggaggcc
gttctcctagctcgcaacaatagggagattgtcacctcaattgcccttctacagaaggca
gtggaaggtttgctggaccactgcacatattctcaattgcccagtgatcaagacctatta
gtgcgcttcagggactgcaacttgatggtgctgaagagtttacaggaccagagggcctat
ggaccccagtggaccaacaaacaggttaccagatgtctgattgaggtgggaggagacaac
aaatacaatgcagatgcagtagactgtcttatacgttctgggctggtcaacatgcagcag
tatgacctgtacctggtccaactcatggagaatggactgaactatcttggagtcatgttt
gccatgcaactagtgcaacgctattgtgtagacgataaggccaatagcccagtcacagag
gttgactttgccaacactattgaggccctgacacaggtgaactcacgtaaccagaggcct
cctgaagggctggcccagatgttggaaggcctacaccccccagtagattttagtctttta
gagcgtgccataggaggcccgacctctatgatgcagtcaggaatatcacaggccagagaa
ttagatgacccacccgggctccatgaaaagacagagttcctgttgcgtgagtgggtgaac
atgtatcactcgcctgctgctggtcgtgatagtactaaggcttttacagcatttgtacaa
cagatgcatcagcaaggaatcctcaagacagatgatctcatcacacgcttcttccgttta
tgtacggagatgtgtgttgacctgtgttatcgtgctctgggtgaacagtcacagaaccct
gctctagtccgcgccaagtgctttcatacactcgatgcatttgtcagacttattgccctg
ctcatcaaacactcaggtgacacagccaacacagtcacaaagatcaaccttctcaacaag
gtattgggtattgtggctggggtactactgcaggaccatgctgtccgtcactcagatttc
cagcagctgccctatcatcgcatcttcattatgctcttcattgagctgaatgctccagaa
cacatactcgagaacatcaatttccaagtgctcacagctttctgcaacacattccacgtg
ctaaggccagccaaggctcctgggtttgcttatgcctggctggagcttctctcacaccgt
gtgtttattgggcgattgctggccctcacaccccaacaaaagggctggggaatgtatgca
cagttgttactcgacttgttcaagttcttgaccccgttcttacgcaatgctgaactgacg
aagccaactcaactcctttacaagggtacattgcgagtcctgttagtgctactccatgac
tttccagagttcttatgcgactaccattatgccttctgtgatgtcataccacccaactgt
attcagatgcgcaatctcattctgagtgcattcccacgcaatatgcgattacctgaccca
ttcacacccaatctcaaggtggatatgttggctgacatcgcacatcctccccgaatactt
accaactttgccaagatgattgagccagcgtcctttaaaaaggacttggactcctacctt
aaaacaaggtcacctgttaccttcctgtcagacctccgcagtaatttacagctgaatgaa
ccagggatgcggtacaacatcccacttatgaatgcactggtactgtatgtggggacccag
tctatccaacatatccatagcaagggtctcactccaagtatgtccacaattgcacactct
gctcacatggacatcttccagaacctgggtgttgatcttgacacagagggtcggtacctt
ttcctgacgtccatctctaaccagctgcgatatcccaacagccatacttactacttcagc
tgtacattactctacctgtttgccgaggccaacacagaggccatacaggaacagatcaca
agggtgctacttgagcgattgatcgttaacaggcctcatccatgggggttactcatcaca
ttcattgagctcatcaaaaatccacagttcaaattctggaatcatgagtttgtgcattgt
gctccagagattgaaaagttatttgagtcggtcgcccggtcatgtatgcagcctaaaact
ggacagactttgagagagaccgaaacaaacgaaattcactga
DBGET
integrated database retrieval system
