Yersinia frederiksenii: AW19_2365
Help
Entry
AW19_2365 CDS
T03606
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yfr
Yersinia frederiksenii
Pathway
yfr03410
Base excision repair
yfr03430
Mismatch repair
yfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AW19_2365 (recJ)
03430 Mismatch repair
AW19_2365 (recJ)
03440 Homologous recombination
AW19_2365 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yfr03400
]
AW19_2365 (recJ)
DNA repair and recombination proteins [BR:
yfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AW19_2365 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AW19_2365 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AW19_2365 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AJI86436
LinkDB
All DBs
Position
complement(2545706..2547439)
Genome browser
AA seq
577 aa
AA seq
DB search
MTLKTQLRRREAADDSHLPTQLHPLLRRLYVSRGVKSAEELERGVKGLLAWQQLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPE
VVEQVAARGAELIVTVDNGISSHAGVDLAHAMGIQVLVTDHHLPGETLPAAEAIINPNLT
GCDFLSKSLAGVGVTFYLMLALRARLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNP
GLMLKFGGHAMAAGLSLEQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMIEPLNGGPLLDAIAFNIDTT
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacattgaaaactcagcttcgccgtcgtgaggcggctgatgatagccacttgcccaca
cagttacatccgctgttgcgccgtctctatgtcagccgtggggtaaaaagtgccgaggaa
cttgaacgtggtgtaaaaggcttacttgcatggcagcaactcgacgggattgatgccggt
gttactctattgcagcaagcattggcggatcgacggcgcatcgtgattgtcggtgatttt
gatgctgatggcgcgaccagcacggcgctggcagtgctggcgttgcgtagcatgggcggc
agcaatattgattatctggtgcccaatcgttttgaagatggctacgggcttagccctgaa
gtcgtcgagcaagttgctgcccgtggtgcagaactgattgttactgttgataacggtatt
tcctcccatgctggagtggacttggctcatgccatgggtatccaagtgttggtgaccgac
caccatctgccgggtgaaaccttgccagcagctgaagctattattaacccgaatttgacc
ggatgtgattttctctccaaatcactggccggggtgggtgtgactttttatctgatgctg
gcgttacgtgctcgtctcagagacagtggttggtttgagcaacgggctttagcggtacct
aatttagctgagttgctggatttggtggcattggggactgtggctgatgtggtgccattg
gatgccaataaccgaattttggtacatcaagggctaagccgtattcgcgctggaaaatgc
cgcccagggattcgtgcattattggaggttgccaaccgtgatgctcgccaattggcggca
aacgatctgggcttctcccttggcccacggctcaatgctgccgggcgtttggatgatatg
tccatcggagtggcgctgttacttagtgatgatattgctcaggccagagcactggcaatt
gatcttgatgcgctaaaccaaacgcgccgcgagatagagcaaggtatgcaagttgaagct
ttgcaactgtgtgaccaattagagcgcaccagcacagaattaccttacggtatcgcgatg
taccatccagagtggcatcaaggggtcgtcgggattctagcttcacgtattaaggagcgt
ttccaccggccagtgattgcttttgctccagcaggtgacggtttacttaaaggttcgggg
cgcagtgtggctggcctacatatgcgggatgctctggaacgactggacaccttgaaccca
ggattgatgttgaaatttggcggccatgccatggcggcgggattatcgttggagcaggat
aagttcgatgaatttcgtcagcgctttgcagatttagtcggtgaatggatggatgcctca
cagttagagggcgttatctggtcagacggcgaactgaaaggcaacgaattgtcgctggaa
accgcagagttgctgcgtgatggtggcccatgggggcaatccttcccggaacccacattt
gacgggaaattccgcatcttgcaacaacggctggtgggcgaacgtcatctgaagcttatg
attgaacccttgaatggtgggcctttgctggatgctatcgcctttaatattgataccact
ttatggcctgacagcagtgtgcgtgaagttaagctggcttataaactcgatattaatgag
tatcgcggcaatcgcagtgtgcaattactggttcagcacttatggccttattaa
DBGET
integrated database retrieval system
