Yinghuangia sp. ASG 101: LO772_13415
Help
Entry
LO772_13415 CDS
T07749
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yia
Yinghuangia sp. ASG 101
Pathway
yia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LO772_13415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yia03400
]
LO772_13415 (mfd)
Enzymes [BR:
yia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LO772_13415 (mfd)
DNA repair and recombination proteins [BR:
yia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LO772_13415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
UGQ14490
LinkDB
All DBs
Position
complement(3213109..3216657)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSLTGLLDAVVADPAFTEATRAAESGGRPHLDLVGPPALRPFLVAAIAARAGRPVLAVTA
TGRESEDLVSALGSLLPPESVVEFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPGAPDT
VGGPVKVVVAPVRSVLQPQVKGLGDLVPVSLVAGAEAELDDAVERLAAAAYSRVDLVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDQVEEIRYFKVADQRSLEVAEDGLWAPPCRELL
LTPEVRERAAELLADHPSLADMLGRISEGVAVEGMESLAPALVDDMELLLDVLPAGSHIL
VCDPERVRTRAADLVATSREFLDASWAAAAGGGESPIDVGAASLRGIAEIREHAREIGVP
WWTTSPFSADTELDARLEADTVVAGVQAVESYRGDSARVLADVKGRLADDWRIVFVTEGH
GPAQRYVELLSGEGVAARLDADLPAAPGPGLVHVATGRIENGFVSDSLKLLVLTETDVSG
QRSSTKDMRRLPSRRRNVVDPLQLKTGDYVVHEQHGVGRYIEMVQRTVGGAQREYLVVEY
APAKRGQPGDRLFVPTDQLEQVTKYVGGEAPSLHRLGGADWQKTKSKAKKAVKQIAGELI
QLYSARMAAPGHAFGTDTPWQRELEDAFPYAETPDQLSSIEEVKADMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFAERYAQFPVNVRALSRFQTD
GEAKATLEGLAEGSVDLVIGTHRLFSQDTRFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGAYDDKQIAAAVRRELLRE
GQVFYIHNRVESIDKAAAKIRELVPEARVATAHGQMNENALERVVVDFWEKEFDVLVCTT
IVESGIDISNANTLIVERADNFGLSQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHER
LATIAQHTEMGAGMFVAMKDLEIRGAGNLLGGEQSGHIQGVGFDLYVRLVGEAVAEYKGD
QAEEVPEVKVELPVDAHIPHDYVPGERLRLEAYKRIAAITCEDDIAAVRAELTDRYGPLP
VPVENLLEVARFRAHVRRAGLTDVTLQGNFVRFGPVDLRESQQLRLQRLYPKTLVKGAVH
QILVPKPMTARIGGQPLRDTALLGWARDLVDAVLLEPIAASR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaccggtcttctcgatgccgtcgtcgccgatcccgcgttcaccgaggccacc
cgcgccgcggagagcggggggcggccccacttggacctggtcggtccgccggcgctgcgg
ccgttcctggtcgccgccatcgcggcccgcgccgggcgtcccgtgctcgccgtgaccgcc
accgggcgcgagagcgaggacctggtcagcgcgctgggctcgctgctgccgcccgagtcg
gtggtggagttcccggcgtgggagacgctgccgcacgagcggctgtcgccgcgctccgac
accgtcgggcgccggctcgcggtgctgcgccggctcgcgcaccccggtgcgcccgacacc
gtcggcggcccggtcaaggtcgtggtcgcgccggtgcgcagcgtgctgcaaccgcaggtc
aaggggctcggcgacctcgtgccggtgagcctcgtggcgggtgcggaagccgagctggac
gacgccgtcgaacggctcgccgccgccgcgtactcccgggtcgacctcgtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcctggacgtgttcccgcccaccgaggagcacccg
ctccgcatcgagttctggggcgaccaggtcgaggagatccgctacttcaaggtcgccgac
cagcgctcgctggaggtggccgaggacggcctgtgggcgccgccgtgccgcgagctgctg
ctgacccccgaggtgcgcgagcgggccgccgagctgctggccgaccaccccagcctcgcc
gacatgctcggcaggatcagcgagggcgtcgcggtcgagggcatggagtcgctcgcgccc
gccctggtcgacgacatggagctgctgctcgacgtgctcccggccggcagccacatcctg
gtgtgcgaccccgagcgcgtacggacgcgcgccgccgacctcgtggcgaccagccgggag
ttcctggacgcgtcgtgggccgcggcggccggcggcggcgagagcccgatcgacgtcggc
gcggcgtcgctgcgcggtatcgcggagatccgcgagcacgcccgggagatcggggtgccg
tggtggacgaccagcccgttcagcgccgacaccgagctggacgcgcgccttgaggcggac
accgtggtcgccggcgtgcaggcggtggagtcgtaccgcggggactcggcgcgcgtgctg
gccgacgtcaagggccgcctggccgacgactggcgcatcgtcttcgtcacggagggccac
ggccccgcgcagcgctatgtcgagctgctgtccggcgagggcgtcgccgcgcgcctggac
gccgacctgcccgccgcccccggcccggggctggtgcacgtcgcgaccgggcggatcgag
aacggcttcgtctccgacagcctcaagctgctcgtgctcaccgagaccgacgtgtcgggg
cagcgcagctcgacgaaggacatgcggcgcctgcccagccgccgccgcaacgtcgtcgac
ccgctccagctcaagaccggcgattatgtggtgcacgagcagcacggcgtcggccgctac
atcgagatggtgcagcgcacggtcggcggggcgcagcgcgagtacctggtcgtcgagtac
gccccggccaagcgcggccagccgggcgaccggctgttcgtcccgaccgaccagctcgaa
caggtgaccaagtacgtcggcggcgaggcgccgtcgctgcaccggctcggcggcgcggac
tggcagaagaccaagtcgaaggcgaagaaggcggtcaagcagatcgccggcgagctgatc
cagctgtactcggcgcgcatggccgcgcccggacacgcgttcgggacggacacgccgtgg
cagcgcgagctggaggacgcgttcccgtacgccgagacgcccgaccagctctcgtccatc
gaagaggtgaaggccgacatggagaagtcggtcccgatggaccggctgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggc
aagcaggtcgcggtgctcgtgcccacgacgctgctggtgcagcagcacttctcgacgttc
gccgagcgctacgcgcagttcccggtcaacgtgcgcgcgctgtcgcgcttccagaccgac
ggcgaggccaaggcgaccctcgaaggcctcgcggagggcagcgtcgacctggtcatcggc
acccaccggctgttctcgcaggacacccggttcaaggacctcggcctggtgatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgcgaacgtc
gacgtgctgacgatgtcggcgacgccgatcccgcgcacgctggagatggcggtcaccggc
atccgcgagatgtcgacgatcaccacgccgccggaggagcggcacccggtgctgacgttc
gtcggggcgtacgacgacaagcagatcgccgccgcggtgcgccgcgaactgctgcgcgag
ggccaggtgttctacatccacaaccgcgtcgagtcgatcgacaaggcggcggcgaagatc
cgcgagctggtgccggaggcgcgcgtcgcgaccgcgcacgggcagatgaacgagaacgcc
ctcgaacgcgtcgtggtcgacttctgggagaaggagttcgacgtcctggtctgcacgacc
atcgtggagtcgggcatcgacatctcgaacgccaacaccctgatcgtcgagcgcgccgac
aacttcgggctgtcgcagctgcaccagttgcgcggccgggtgggccgggggcgcgagcgg
gcgtacgcgtacttcctgtatccgccggagaagccgctgaccgagaccgcgcacgaacgg
ctggcgacgatcgcgcagcacaccgagatgggcgcgggcatgttcgtcgcgatgaaggac
ctggagatccgcggcgccggcaatctgctgggcggtgagcagtccgggcacatccagggc
gtcgggttcgacctgtacgtgcggctggtcggcgaggccgtcgcggagtacaagggcgac
caggccgaagaggtgcccgaggtgaaggtcgaactgccggtcgacgcccacatcccgcac
gactacgtgccgggggagcggctgcgcctggaggcgtacaagcgcatcgcggcgatcacg
tgcgaggacgacatcgcggcggtgcgtgccgaactgaccgaccggtacgggccgttgccg
gttccggtggagaacctgctggaggtcgcgaggttccgggcgcatgtgcgccgggcgggg
ctgaccgatgtgacgttgcagggcaacttcgtccggttcgggcccgtggacctgcgggag
tcgcagcagctgcggctgcagcggctgtacccgaagacgctggtgaagggggccgtgcac
cagatcctggtgcccaagccgatgaccgcgcgcatcggcgggcagccgctgcgcgacacc
gcgctgctgggctgggcgcgggacctggtggacgcggtgttgctggagccgatcgcggcg
tcgcggtag
DBGET
integrated database retrieval system
