Yersinia intermedia: CH53_2095
Help
Entry
CH53_2095 CDS
T03608
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yin
Yersinia intermedia
Pathway
yin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH53_2095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yin03021
]
CH53_2095 (rpoB)
03400 DNA repair and recombination proteins [BR:
yin03400
]
CH53_2095 (rpoB)
Enzymes [BR:
yin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CH53_2095 (rpoB)
Transcription machinery [BR:
yin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CH53_2095 (rpoB)
DNA repair and recombination proteins [BR:
yin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CH53_2095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
AJJ21224
UniProt:
A0A0T9N4L7
LinkDB
All DBs
Position
2360188..2364216
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaattcatcgag
caagatcccgaagggcagcacggcctggaagcagcgttccgttctgtttttccaattcag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagcctgtattt
gacgtcaaagagtgccagatccgtggtgtgacttattccgcaccgctgcgcgttaaactg
cgtctggtaatctatgagcgcgaagctcctgaaggtacggtcaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgaccgaaaacggtacctttgtcattaacggt
actgagcgagttatcgtatctcagttgcaccgtagtcctggcgtattctttgacagtgat
aagggtaaaacccattcatcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagtttgacccgaaagacaacctgtttgtccgtattgaccgt
cgtcgtaaattgcctgcaaccatcattctgcgcgcattgagtttcaccactgcacagatc
ttggatctgttcttcgataaagtggtctttgagattcgtgacaacaagctgcagatggaa
ttggttccagagcgcctgcgcggtgaaacggcatcctttgatattgaagcgaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgtcatattcgccagcttgaaaaagac
ggcattgatcgcatcgaagttccggttgaatacattgccggtaaagtagttgcaaaagac
tatatcgatacgaacaccggtgagcttatctgtgcagccaacatggagttgtcactggat
ttgcttgctaagctgagccagtctggccacaagcaaatcgaaacattgttcaccaacgat
ctggatcacggtgcttatatctccgagaccttgcgtgttgacccaaccagcgatcgtttg
agcgccttggttgagatctaccgcatgatgcgtcctggtgagccaccaacacgcgaagct
gctgaaaatctgtttgagaacctgttcttctccgaagaccgctatgatttgtcagcggtt
ggccggatgaagttcaaccgttctctgctgcgtgacgaaatcgaaggttccggtattctg
agcaaagaagacatcaccgaagtgatgaaaaagctcatcgatatccgtaatggtcgcggc
gaagtggatgatatcgaccacttgggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgtaggtctggttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgacctcgacactctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggttccagccagttgtcacaatttatggaccagaacaacccg
ttgtctgagattacgcataaacgtcgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgccca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggtttcctggaaacaccttatcgtcgcgtgcgcgatggtgtggtgacc
gatgaaattaactatttgtctgctattgaagaaggcaatttcgttatcgctcaggcgaac
tccaacctggacgaagacggccgcttcattgaagacttggtcacttgtcgtagcaaaggc
gaatcaagcctgtttagccgcgaccaggttgactatatggacgtttccactcaacaggtc
gtgtctgttggtgcttctctgattccattcttggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgctggtg
ggtactggtatggaacgtgcagtagcggttgactcaggggtaacctctgtagctaaacgt
ggcggtactgttcaatacgtagatgcatcacgtatcgttattaaagttaacgaagacgaa
atgtatccgggcgaagcaggcattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccatcaacagacctgggcgaactggcattgggtcagaacatg
cgcgtagcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaagaagatcgcttcacaactatccacattcaagaactggcatgtgtgtcc
cgcgacaccaagctggggccggaagagatcactgctgatatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtatatattggtgctgaagtgactggcggc
gacattctggttggtaaggtaacacctaaaggtgaaacccaactgacgccagaagagaag
ctgttacgtgcgatctttggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacggttattgacgtacaagtctttactcgcgacggcgtagaa
aaagacaaacgtgcgttagaaatcgaagagatgcaactgaagcaggctaagaaagacctg
actgaagaattgcagatcctggaagcgggcctgtttgcacgtatccatgcagtactggtt
tctggtggcatcgaagctgacaagctgagcaagttaccacgtgatcgttggctcgaactg
ggcctgaccgacgaagacaagcaaaaccaactggaacagttggcagagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaagatcacccaaggtgat
gatttggcaccaggcgtgctgaagatcgtcaaggtgtatctggccgttaaacgtcagatt
caaccgggtgacaagatggctggtcgtcacggtaacaagggtgttatctccaagattaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattttggaaacccacttagggatggca
gcgaaaggcattggcgagaaaatcaacgccatgctgaagaagcaggaagaagttgccaaa
ctgcgtgagttcatccaaaaagcctacgatctgggtgacaacgtttgtcagaaagttgat
ctgagcaccttcaccgatgacgaagtattgcgtctggctgagaacctgaaaaaaggtatg
ccaattgcaacaccagtcttcgatggtgcgacagagaaagagatcaaggaactgttacag
ctaggtggtctgccaacttctggtcagattacgctgtttgacggccgtaccggcgagcaa
ttcgaacgtcaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcgtacacattgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa
DBGET
integrated database retrieval system
