Yersinia rochesterensis: CH54_3102
Help
Entry
CH54_3102 CDS
T03609
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ykr
Yersinia rochesterensis
Pathway
ykr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CH54_3102 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ykr03021
]
CH54_3102 (rpoD)
Transcription machinery [BR:
ykr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CH54_3102 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJJ36971
LinkDB
All DBs
Position
complement(3367536..3369374)
Genome browser
AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDDEDEDEDEEEDDNSIDPELARQKFSDLREQYENARMEIKKNGRS
HAKAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFASNETSDTWFAAAVAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcccct
gatgccgatgatttaatgctggccgagaacaccactgataccgacgatgacgcggctgaa
gctgctgcacaggtgttgtccagtgttgaatccgaaatcgggcgtactactgacccggtg
cgtatgtacatgcgcgaaatgggtaccgttgaactattgacgcgtgaaggcgagattgat
atcgccaaacgtatcgaagacggtatcaatcaggttcagtgctcggttgctgaataccct
gaagctattacttacctgttggaacaatatgatcgtgttgaagcgggcgaagcccgtcta
tctgacctgatcaccggctttgttgatccaaacgccgaagaagatattgcgcctacggca
actcacgttggttctgaattatccaccgaagagatggatgacgacgacgacgaagatgaa
gacgaagacgaagaagaagacgacaacagcatcgacccagagctggcgcgccagaaattc
agcgatttgcgtgagcagtatgaaaacgcacgcatggagatcaagaaaaatggtcgtagc
cacgccaaggctgctgctgaaattctgaagctttctgaagtgttcaaacagttccgcctg
gtgccgaagcaatttgactatctggtcaataacatgcgtgccatgatggaccgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgttaccctgtttgccagcaatgaaaccagcgatacttggtttgcggcagcagtggct
atgggcaaaccatggtctgaaaaactgaaagatgtttcggacgatgtgcaacgtagcttg
cagaaactacgtcagatcgaagaagaaaccggcctgactattgagcaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcacgtcgcgccaagaaagaaatggtcgag
gctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggattacaattc
cttgatttaattcaggaaggtaatatcggcttgatgaaagcagtagataaattcgaatac
cgtcggggttataaattctcaacctatgcaacttggtggattcgtcaggcgatcacccgc
tctatcgcggaccaggcacgtaccatccgtattccggtgcatatgattgagaccattaac
aaactcaaccgtatttcgcgccagatgctgcaagagatgggccgtgagccaacaccggaa
gagctggctgaacgcatgctaatgccggaagacaagatccgtaaagtgttgaagattgcg
aaagagccaatctcaatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagataccactctggagctgccgctggactctgcaacctctgagagcctgcgc
tctgccactcacgacgtgttagcgggcctgaccgcgcgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacactctggaagaagtgggcaaacagttcgac
gtcacccgtgaacgtatccgtcagatcgaagctaaggcgctgcgtaaactgcgtcaccca
agccgctctgaagtgctgcgcagcttcctggacgattaa
DBGET
integrated database retrieval system
