Yoonia phaeophyticola: AABB29_06160
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Entry
AABB29_06160 CDS
T10493
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yphy Yoonia phaeophyticola
Pathway
yphy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yphy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AABB29_06160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yphy03021
]
AABB29_06160 (rpoB)
03400 DNA repair and recombination proteins [BR:
yphy03400
]
AABB29_06160 (rpoB)
Enzymes [BR:
yphy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AABB29_06160 (rpoB)
Transcription machinery [BR:
yphy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AABB29_06160 (rpoB)
DNA repair and recombination proteins [BR:
yphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AABB29_06160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WZC50220
UniProt:
A0ABZ2V892
LinkDB
All DBs
Position
complement(602897..607036)
Genome browser
AA seq
1379 aa
AA seq
DB search
MASTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSDTPLDGEGIKGVFQSV
FPIKDFNETAVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVEYHLDK
KANAWQTKFFPERVRGTRPTHDLVDAKTGEVIAKAGEKVTPRSVKKLIDAGEVTDLLVPY
ENIVGKFVAQDIINEENGAIYVEAGDELTLEMDKDGDVIGGTLKDLVDAGITTIPVLDID
NVTVGSYMRNTMAQDKNMNRETALMDIYRVMRPGEPPTVESASALFDTLFFDAERYDLSA
VGRVKMNMRLDLDAEDTMRTLRKEDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGEL
MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN
PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA
RVNKYGFIETPYRKVVEGKVTDEVSYMSATEEMRHTVAQANANVNDEGSFNNELVSTRKN
GDYTLSPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLQAEAPL
VGTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATSDLELGDAGVDIYRMRKFQRSN
QNTCINQRPLVKVGDTVQKGQVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISE
RIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPG
DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE
KDERALQIEREEVERLARDRDDELVILDRNIYARLKDMILGKEAVKGPKGFKPNSVVTEE
ALSELSRGQWWQIALKDEADAQVVEALNEQYEIQKKAMDARFEDKVEKVRRGDDLPPGVM
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGLGIQIDDALGEYRRSGDLTPVRDAMKIVYGDDVYDEGVAGMDEG
ELVEAAGNITRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLYDGRTGEQFSRKVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacgttccttggtcagaaacgcctgcgtaagtactacggcaaaatccgtgaa
gtacttgaaatgccgaaccttattgaggttcaaaaatcatcctacgatctgttcctgcgc
tctggcgacagtgacacaccgcttgacggtgaaggcatcaaaggtgtcttccagtcggtg
ttcccgatcaaggatttcaatgaaacagccgtgcttgagttcgtcaagtatgagctggaa
aagccgaagtatgatgttgaggaatgtcagcagcgtgacatgacctacagcgcgccgctg
aaagtcaccctccgtctgatcgtgtttgatgtggatgaagatacaggcgcgaagtctgtc
aaagacatcaaagaacaagacgtattcatgggcgatatgcctttgatgaccccaaatggt
acatttgtcgtcaacggcaccgagcgcgtgatcgtatcccagatgcaccgttcacccggc
gtgttctttgaccacgacaagggcaagacccattcctcgggtaagttgctgtttgcctgc
cgcattatcccatatcgcggcagctggctggactttgaatttgacgccaaggatctggtg
ttctgccggattgaccgtcgtcggaaattgcctgtgaccaccctgctttatgcgctgggt
ctggatcaggaaggcatcatggatgcctattacgacacggttgagtatcacttggacaag
aaggccaatgcctggcagaccaagttcttccctgagcgtgtgcgcggcacccgcccgacc
catgatctggtagacgccaaaaccggcgaagttattgccaaagccggtgaaaaggtcacc
ccccgttcggttaagaaactgatcgacgcgggcgaggttactgatctgctggtgccttac
gagaacatcgtcggtaaatttgttgcccaagacatcatcaacgaagagaacggtgcgatc
tatgtcgaggcaggtgatgagctgacccttgagatggacaaagatggcgacgttatcggc
ggcacgctcaaagatctggttgatgccggcatcacaacgatccctgtgctggatatcgat
aacgtcactgttggctcttacatgcgcaacactatggcgcaggataagaacatgaaccgc
gaaaccgcgctcatggatatttatcgcgttatgcgtccgggtgagccgccaacggttgaa
tctgcctcggcgctgtttgacacgctgttcttcgatgctgagcgttatgatctgtctgcg
gttggccgcgtcaagatgaacatgcgtcttgatctggatgccgaagacaccatgcgcacc
ctgcgcaaggaagatatcgtggcctgcatcaaggcactggttgagctgcgtgacggcaaa
ggcgatgtggacgatatcgaccacctagggaaccgccgtgtccgttctgttggcgagttg
atggaaaatcagtaccgcgttggtctgctgcgcatggagcgtgcgatcaaagagcgtatg
tcatccgtcgaaatcgacacggtcatgccacaggatctgatcaacgccaaacctgccgct
gccgctgtgcgtgagttctttggctcttcccagctgtcccagttcatggaccaaaccaac
ccgctgtccgaggtgacgcacaagcgccgcttgtccgcgcttgggcccggtggtttgacc
cgcgaacgtgctggttttgaggtgcgcgacgtgcacccaacccactacggccgtatgtgt
ccgattgaaacgccggaagggccaaacattggtctgatcaacagcctggcgactttcgcc
cgggtaaataagtacggctttatcgagaccccatatcgtaaagtggttgagggcaaggtg
accgatgaggtcagctatatgtccgcgaccgaagaaatgcgtcacactgtggcgcaggcg
aatgcgaatgtgaatgacgaaggttcgttcaacaacgaactggtctcgacccggaaaaac
ggtgattacacgctgagcccacgcgaaaacgtggacctgatcgacgtctcgcccaagcag
ctggtttctgttgcggcctcgctgatcccattccttgagaatgacgatgcgaaccgggcc
ttgatgggctcgaacatgatgcgtcaggctgtgcccttgcttcaggctgaggcacctttg
gtcggtactggtatcgaagaggtcgttgcccgcgattcgggtgcggcgatcatggcgaaa
cgtgccgggatcatcgaccaggtggatgcgcagcggatcgtgatccgtgcgacctctgac
cttgaactgggcgatgctggcgttgatatctaccgcatgcgcaaattccagcgctcgaac
cagaacacctgcatcaaccagcgtccgctggtgaaagtgggcgacacggttcaaaaaggt
caggtgattgccgatggtccatccaccgatatcggtgaattggccctgggtaagaacgtg
gtcgtcgcctttatgccttggaacgggtataactatgaggactccatcctgatctctgag
cggatcgtccgtgatgacgtctttacctcaatccatattgaggaatttgaagtcgctgcc
cgtgatacaaagcttgggccagaggaaatcacccgcgatattccaaatgtcggtgaagaa
gcgctgcgcaaccttgatgaagccggtattgtctacatcggtgctgaggttgaaccaggc
gacattcttgttggtaagatcacaccaaagggcgaaagcccgatgacccccgaagaaaag
cttttgcgcgctatctttggtgaaaaggcatctgacgtccgcgacacatcgctgcgcgtg
aagcctggtgatttcggtactgttgttgaggtccgcgtctttaaccgccacggtgtggaa
aaagacgaacgtgccctgcagatcgaacgcgaagaggttgaacgccttgcccgtgaccgt
gatgacgaattggtcatcctggatcggaacatctacgcccgtctgaaggacatgatcctg
ggcaaagaagccgtgaaaggtccaaaagggttcaagccgaactcagttgtcacagaagag
gccctgtctgagctcagccgtggccagtggtggcagattgccctgaaggatgaagctgac
gcgcaggtcgttgaggccctgaacgagcagtatgagatccagaaaaaggccatggatgcc
cgctttgaggataaggtcgaaaaggtccgccgcggcgacgatctgcccccaggtgtcatg
aagatggtcaaggtctttgttgccgtgaagcgtaagctgcagcccggtgacaagatggcc
ggtcgtcacgggaacaaaggtgttatttctaaggttgtccccatggaagacatgccgttc
cttgctgatggtacgccggttgacttctgtctgaacccgctgggtgtgccgtcgcgtatg
aacgtcgggcagatccttgagacccatatgggttgggctgcacgtggtctgggtatccag
attgatgacgcgttgggtgaatatcgccgttctggcgatctgacccccgtgcgtgatgcg
atgaagatcgtctatggcgatgacgtctatgacgaaggcgttgcgggcatggatgaaggc
gaactggttgaagcggctggtaacatcacacgcggtgtgccaattgcgacgcctgtcttt
gatggtgctaaagaggctgatgtgaacgacgcgctgacacgcgctgggttcgacacctct
ggtcagtctgtgctctatgatggccgcacaggtgagcagtttagccgtaaggtgacggtg
ggtgtgaaatacctgctgaagctgcaccacttggtcgacgacaagatccacgcacgttct
accgggccttacagccttgtcacgcagcaaccgttgggcggtaaagcccagttcggtggc
cagcgtttcggggaaatggaagtctgggcattggaagcttatggcgcggcttacaccctg
caggaaatgctgactgtgaagtcggatgacgtggcaggccggacgaaagtttatgaaagc
atcgtcaagggcgaggacaattttgaggccggtgtgcctgaatcgttcaacgtgcttgtg
aaagaagtccggggcctcggccttaacatggaactcctggatgcggaggatgaggaataa
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integrated database retrieval system
