Yersinia pestis Harbin35: CH55_4277
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Entry
CH55_4277 CDS
T03717
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ypj
Yersinia pestis Harbin35
Pathway
ypj03030
DNA replication
ypj03430
Mismatch repair
ypj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH55_4277 (dnaE)
03430 Mismatch repair
CH55_4277 (dnaE)
03440 Homologous recombination
CH55_4277 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypj03032
]
CH55_4277 (dnaE)
03400 DNA repair and recombination proteins [BR:
ypj03400
]
CH55_4277 (dnaE)
Enzymes [BR:
ypj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH55_4277 (dnaE)
DNA replication proteins [BR:
ypj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CH55_4277 (dnaE)
DNA repair and recombination proteins [BR:
ypj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CH55_4277 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
Motif
Other DBs
NCBI-ProteinID:
AJK06048
LinkDB
All DBs
Position
unnamed1:96242..98830
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AA seq
862 aa
AA seq
DB search
MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVIC
GVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKR
EQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVY
PHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRL
RIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPK
MADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLM
VRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDAD
LDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADMAVSKEFK
NLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVER
TPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPL
DDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGM
LDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAI
GKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGV
KLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPA
EFFAAALTILGEDKHQGWLRMR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctctgatggtcagaactgacttctccctgggagagtcagctctaaaagcagaa
aacgcggtgaaaatcgcgagagacgctggctacactgctgtcatttccgctgacagcatg
aacattgccagtgtgattcccctgcagcgtgccgctggcgacgatatggcggttatttgt
ggtgttaagctgaatgtggtcgacgatccgacatacgagcaccgcgcccgccttgcgaaa
gaatcagagagatgtatggaatcattggtgcgtgatcgcagctactgcttcacggcactg
ataaagaatgagcaaggttatcgcgacgtgtgcgaactgatgaccttagcgaacaagcgc
gagcaattctactttgtcccgcgtctggcgctcgaccaactggcggccgcgtatgccaaa
ggcaacatcatcctgctgacgtccgacattggcagtgtattccagcgccgggacttcgca
aagattatcgggacgctggtcacagctggaggacgcgataacttctacagcgtggtttat
ccgcaccctaccccattctacgaccagattaacgtccgggcgatgaaagtagcgagcgca
ctgaaaatagagccagtggcgttctatcccgcttattacgaagcggtcgacgacgctgac
attaaagacattgcgcacatggttacgaacaacatcaaaatcgaccagccgcatcgtctg
cgtattccccaccagcgagataacgccgttaatggtcgccgccatctccttgaagcgctg
aaagccttctccgttcgcatggatgtaccggtaacagctgcaatggcctcaacaacgcag
gacaccattatcgaagcctgcacatggcgctggcatgaattgccaccagcactgcccaag
atggcagacgacgagcctgcaacgctgatgaagctggctgtcgcggggctgcgcaagcgt
cttactaccaaagagtttggctacacaccaccggcttctgagcaccgcgtgtatgttgat
cgtctgaagtacgaaatggacacgctgacccgtctgggcttctgtggctacttcctgatg
gtgcgcgacctgatgaatcacagccgtgaaactggcattcctgtcgggccaggtcgtggt
tcctctgccggttctctggtggcgtggtgcatcggcataaccaacgtcgatcctatccgt
cacggtcttctgtttgagcgtttcatcaaccctgaacgtctcgacttaccggatgcggat
ctggacttcagccaggcacgtcgccatgaggtgatcgagtatctgaatgaacgctatggc
gaagattacgttgccggtattccgaacttcacctatctgggcgcggcttctgcgctgcgt
gacaccgcacgtatttacggtgtcgatgctgcggatatggcggtatccaaagagttcaag
aatctggaggacgatagcctgtcgctggaagagctgcgcgagcaactggccagcctggac
aaatacgccacgaaatacccggaagcgttcaaagcggcgtgtaagctgcaaagcctgatg
cgtggttttggtcgccacgctgcggggatgatcgtcgctggcgttccactggtagagcgc
acgcccgtcgagctgcgtggcaatgctcgctgtattgcattcgataaacgttactgcgag
gcgatggggctgattaagctggacgttctcggtctggcaacgctcgatctgttggatagc
gcgaaacgctacatcaaagagagtaccggggaagacatcaatctcgatgctatcccactg
gacgatcgcaaggttctggatgggttcgctgcagggtacacgcagggcgtattccagctg
gagtccggtcccatgcgcaagctgcttaaagatctgggcggtggcatcgagccaatgagc
ttcaaaaccgttgtcgccacgaccgcactcttccgacctggcccgattcaatccggcatg
ttggacgactatgtctccgtggccaaaggcttcatggctccacagtcgctgcacccggta
ctggacgagcttaccgcggaaaccaacggcgtgattctgtatcaggaacagacgatgaac
gcgacacgattgctggccggtttcacgatggccgaagcagatggtgtacgtaaagcgatc
ggtaaaaaggatatggaaaagatgaagagcatgggcgagaagttcgtcgttcaggctcaa
gctggttggatcgacgttgagatggaagacggcaccacgcagcgtattcaccgcgcggaa
cacttcaaatgtgaggacggcgcactgcggacggtcgaagaagcgctggaggcaggtgtg
aaattgccgatggctgctgtacgcgttacagggtcacaaccgggcttgtctgagacgaaa
gctaaggagatctgggatgccttcgagaagaacggtgcgtatcagttcaacaaatcacat
cccgttgcctactcgctgatcagctatcagtctatgtggttaaagacacattaccctgct
gagtttttcgctgctgcgctcaccattctgggcgaggataagcaccagggctggttaagg
atgcgctga
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