Yersinia pestis D182038: YPD8_0040
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Entry
YPD8_0040 CDS
T01833
Symbol
ligA2
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypx
Yersinia pestis D182038
Pathway
ypx03030
DNA replication
ypx03410
Base excision repair
ypx03420
Nucleotide excision repair
ypx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPD8_0040 (ligA2)
03410 Base excision repair
YPD8_0040 (ligA2)
03420 Nucleotide excision repair
YPD8_0040 (ligA2)
03430 Mismatch repair
YPD8_0040 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypx03032
]
YPD8_0040 (ligA2)
03400 DNA repair and recombination proteins [BR:
ypx03400
]
YPD8_0040 (ligA2)
Enzymes [BR:
ypx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YPD8_0040 (ligA2)
DNA replication proteins [BR:
ypx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPD8_0040 (ligA2)
DNA repair and recombination proteins [BR:
ypx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YPD8_0040 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPD8_0040 (ligA2)
MMR (mismatch excision repair)
DNA ligase
YPD8_0040 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPD8_0040 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF3701
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACY60730
LinkDB
All DBs
Position
53872..55548
Genome browser
AA seq
558 aa
AA seq
DB search
MFLLISNTIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGHSPVTDDIYD
QLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLWV
QPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAPALLTLQGEL
FLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQV
MGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQATPGQWSM
AWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVTRWKQWDIAP
GDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCEPQFLSRLIW
LSGPGGLDIGGIGGGFWQELIHHELINDLVGWLLLTPEQIASIPGIGNARAEKIYQQFQR
AKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIKHFLDHPDVQ
ALADFLSTQKVVGFELTE
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgttcctattaatatctaacaccatagtggtgggcggtgcttgggctacatcaacatgc
cctgattggcctgcaaccagaatagcggttgagattaacgcgttggagcaacagttgaat
aagtggtcggccgcttaccatcagcaaggccatagcccggtcacggatgacatttatgat
caattacaggacaaattacgtgtgtggcaatcctgtagggggttacctgataagacggaa
agccagccgatccccggcaaagggcaatttcttcacccagttgcccataccgggttaaaa
aaactcaaagatgaaaccgccctcacaaggtggatggcggggcggaaaaatctctgggta
caacccaaggtcgacggtgtggcagtgacactggtttatcacggggggaaattggtgcaa
cttcttagtcgaggaaatggagtaaaaggtcaaaactggacagaaaaagcgccatttatt
tctgctattcctcaatatattgcaaatgcgcctgcactattaacgttgcaaggggagttg
tttctactgatggatggccaccagcaagcaaaatcgggtggggtgaatgccagatcaacg
gtggcaggtgcactgatgcgcaaatctccgtctccgctattagctcaagttggggtcttt
atttgggcatggcctgatggcccaacaaccatgaaagagaaggtggcactattacaggta
atgggttttccttttacagctaaatacagcgagcccgtcatgtcgcatcttgatgttgtg
caatggcgtcagttctggtttcaagcaccactgccgtttgtcaccgatggtgttgtggtc
aggcaagaggaggagccagctggtcgttattggcaggcaacaccggggcagtggtctatg
gcgtggaagtatccgcctttgcaacacattgccgaagtaaaagatattcattttaccctt
ggacgaacgggtaaaggcacggtggtattagaggttttaccgataaaaattgatgataaa
tggattcgtcgagtgaatattggttcggtcacccgttggaaacaatgggacatcgctcct
ggtgatcacattacattggcacttgccgggcatggtatccctcggctagataacgttgtc
tggcgagtacaccaacggaatactattacggcacccaattgggataaattccatcagctc
agttgctttcaacgcttaccacatggctgtgaacctcagtttttatcccgcttgatatgg
cttagtggcccaggggggctagatattggcggcatcggtggcggcttttggcaagagctt
attcaccatgagttaattaatgatttggtcggatggttattactaacaccagagcaaatt
gcaagtatccctggaattggaaatgcgcgggctgaaaaaatttatcaacagtttcaacgg
gcaaagcagcaacccttttctcgttggttgctggcattggggttcccgcaggttgtttcc
gttgacgcgcagtggcaggttgtattgcgccggagtctatctgaatgggccaccatggcc
gggattgggcaaatgagagcaaaacaaattaagcattttttggatcaccccgacgtacaa
gcactggctgatttcttatctactcagaaagttgttgggttcgagctcacagagtaa
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