Yersinia pestis Z176003: YPZ3_3306
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Entry
YPZ3_3306 CDS
T01210
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ypz
Yersinia pestis Z176003
Pathway
ypz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ypz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YPZ3_3306 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypz03021
]
YPZ3_3306 (rpoB)
03400 DNA repair and recombination proteins [BR:
ypz03400
]
YPZ3_3306 (rpoB)
Enzymes [BR:
ypz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YPZ3_3306 (rpoB)
Transcription machinery [BR:
ypz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YPZ3_3306 (rpoB)
DNA repair and recombination proteins [BR:
ypz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YPZ3_3306 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
ADE66215
LinkDB
All DBs
Position
complement(4248407..4252435)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMHPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRERWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcccgaagggcagcacggactagaagcagcattccgttctgtttttcctatccag
agctacagcggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtattc
gacgtcaaagagtgccagatccgtggtgtgacttattcagcaccgctgcgcgttaaactg
cgtctggttatctatgagcgggaagctccggaaggtacggtcaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgaccgaaaatggtacctttgttattaacggt
actgagagggttatcgtatctcagttgcaccgtagccctggtgtgttctttgacagcgat
aagggtaaaacccattcatcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagtttgatccgaaagacaacctgtttgtacgtattgaccgt
cgccgtaaattgcctgcaaccatcattctgcgtgcattgaatttcaccactgcacagatc
ttggatctgttctttgagaaagtggtctttgagattcgtgataacaagctgcagatggaa
ttggttccagagcgcttgcgcggtgaaacggcatcctttgatattgaagcgaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgtcatattcgccagcttgaaaaagac
ggcattgaccgcatcgaagtaccggttgaatacattgccggtaaagttgttgctaaagac
tatgttgatgcgagcaccggtgaactgatctgtgccgctaacatggagctgtcactggat
ctgctggctaagttgagccaagctggccacaagcaaattgaaacattgttcaccaacgat
ctggatcacggtgcttatatctccgagaccctgcgtgttgacccaaccagcgatcgtctg
agcgctttggttgagatctatcgcatgatgcgtcctggcgagccaccaacacgtgaagcc
gctgaaaatctgtttgagaatctgttcttctccgaagaccgctatgatttatctgcggtt
ggccggatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagaagacatcacagaagtgatgaaaaagctcattgatatccgtaacggtagaggc
gaagtggatgatatcgaccacttgggcaaccgtcgtattcgttccgttggcgagatggct
gaaaaccagttccgtgtaggtctggttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgaccttgatactctgatgccacaggacatgatcaacgccaagcctatctcggct
gcggtgaaagagttctttggttccagccagttatcccaatttatggaccaaaacaacccg
ttgtctgagattacgcataagcgccgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
attgaaacgccagaaggtccaaacatcggtttgatcaactccttgtctgtatatgcacag
actaacgagtatggtttcctggaaacaccttatcgtcgtgtacgtgatggtgtggtgacc
gatgaaattaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgatgaaggccgctttttagaagatttggtgacttgtcgtagcaaaggc
gaatcaagcctgtttagccgcgagcaagttgactacatggacgtatctactcagcaaatc
gtatccgttggtgcttctctgattccattcttggaacacgatgacgccaaccgtgccttg
atgggcgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgttggtg
ggtactggtatggaacgtgcagtggcggttgactcaggggtaacctctgtagccaaacgt
ggcggtactgttcagtacgtagatgcatcccgtatcgttattaaagttaacgaagatgag
atgcacccaggcgaagccggcattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggt
gacgtgctggcagatggcccatcgacagacctgggcgaactggcattgggtcagaacatg
cgcgtagcgttcatgccttggaacggttacaacttcgaagactccatcttagtctccgag
cgcgtggtgcaagaagatcgcttcacaaccatccacattcaggaattggcatgtgtgtca
cgcgacaccaagttagggcctgaagagatcactgccgatatcccgaacgtgggtgaagcc
gcgctctccaaattggatgaatccggtatcgtgtatatcggtgctgaagtgactggtggt
gacattctggttggtaaggtaacgcctaaaggtgaaacccaactgacgccagaagagaaa
ctgttacgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggtgtttctggtacggttatcgacgtccaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgttggaaatcgaagagatgcaactgaaacaggctaagaaagacctg
actgaagagttgcagatcctggaagcgggcttgtttgcacgtatccacgcggttctggtt
tctggtggcatcgaagctgagaagctgagcaagttaccacgtgaacgctggctggaactg
ggcctgaccgacgaagacaagcaaaaccaactggaacagttggcagagcagtacgacgaa
atgaaatctgaattcgagaagaagatggatgccaagcgtcgtaaaatcacccaaggcgat
gatctagcacctggtgtgctgaaaatcgtcaaggtgtatctggcggttaaacgtcagatt
caaccgggtgataaaatggccggtcgtcacggtaacaaaggtgttatctctaagattaac
ccaatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattttggaaacccacttagggatggca
gcgaagggtatcggcgagaaaatcaacgccatgctcaagaagcaggaagaagttgccaaa
ctgcgtgagttcatccagaaggcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcacctttaccgatgacgaagtactgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgcaacgccagtcttcgatggtgcgacagagaaagaaatcaaggaactgttacag
ctgggtggcctgccaacgtctggtcagattaccttgtttgacggccgtaccggtgagcaa
tttgaacgccaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttatagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaggct
tatggcgccgcgtacacattgcaagaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggaatgccg
gagtccttcaacgtattgttgaaagaaatccgctctctgggcatcaatatcgagctggaa
gaagagtaa
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integrated database retrieval system
