Zonotrichia albicollis (white-throated sparrow): 102061478
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Entry
102061478 CDS
T07911
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab04510
Focal adhesion
zab04512
ECM-receptor interaction
zab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102061478 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102061478 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102061478 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
zab00535
]
102061478 (COL9A1)
Proteoglycans [BR:
zab00535
]
Extracellular matrix (ECM) proteoglycans
Others
102061478 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102061478
NCBI-ProteinID:
XP_005483989
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MKSHWKITAFFYLCSFLRSFISATIQHQSRLPAILGASHRIDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQMKSVEFSYKGADGRHQTASFLHLPFLFDSQW
HKLMIIVEANSVTLFIDCIKIESLNIKPKGKINTDGFAVLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARVTQTGIERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSQGAPGPKGQKGEPGLPGARGLPGKGLLGP
PGPAGAAGLPGEVGLAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDLLCPSACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPSGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGEAGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDAGLQGLPGFPGSPGMKGIPGPKGNKGPPGVPGLMGN
PGKQGQQGPEGEAGPTGPRGPPGSRGETGPAGPPGLPGKLGPQGSIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGVPGAEGDGGEKGDLGDMGLPGAKGAVGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSEGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGDIGRKGPKGEPGERGE
RGFPGRGLKGYPGPRGLPGEPGKASYGQEGRDGDRGPPGVAGQPGVPGPPGPPGPPGYCE
PASCRMQAGQRAGKNMKGP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccactggaaaattacagctttcttttacctgtgtagttttctgcggtctttc
atctcagccaccatccagcaccaatcaagactaccagctattctgggtgccagtcacaga
attgatatctgcccaacaatcaggattggccaagatgacctaccaggctttgacctgatt
tctcagtttcaaatagaaaaagctgcttcccaagggattatcgagagagtagtgggatcc
acttctctacaagtagcttataaactgggacccaatgtagatttcaggataccaaccagt
gccatatattccaatggattgcctgatgagtattcctttctaactacttttcggatgact
ggggccacacttcagaaatactggactatttggcaaattcaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtcaaatgaaaagtgttgagttttcttataaaggagca
gatggaagacaccaaacagcatcatttttacatttgcctttcttgtttgactcccaatgg
cacaagctcatgataattgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagagtccttaaacataaaaccaaaagggaaaatcaacactgatggctttgctgtgctt
ggaaaacttaaaaataatcctcaaatttctgttccgttcgagatccagtggatggtgatc
cactgcgaccccctgcgcccccagcgcgaaggctgcggcgagctgcccgctcgggtaacc
cagacgggaatcgagagaggcccccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccaaagggcccccctggt
ccaccgggtccagatggggatgcaggcaaaccaggatcccctgggttgccaggagagccg
ggagctgatggattcacaggacctgatggctcacagggagccccaggaccaaaaggacag
aagggggagccaggactgccaggtgctcgtggacttccaggcaaggggcttcttgggcca
cctggtccagctggtgcagcaggacttcccggggaagtaggtcttgctggtccacctgga
gatccaggaaaaagagggccaccaggactaccaggacctccaggtcctcctggaacgatt
ggcctgcaagatggtgacctgttgtgtcccagtgcttgtcctcctggccgtccaggacat
gctggtttaatgggtatgaaggggcaaaaaggttcaaaaggagagtctggtgaaccagga
aaacaaggttataagggtgaagaaggagaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggtataatgggacctaaaggtacc
aaaggagctcgtggtcttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggagaggcaggtccgaaaggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggtttacccggagtt
gatggccgtgaagggatccctggcatgcctggagctaaaggtgaaccaggaaaacctgga
gctccaggtgatgcagggctccagggattgccaggtttcccaggctctccaggtatgaaa
ggcattcctggcccaaagggtaataaaggtcctcctggggtgccagggttaatgggaaat
cctggtaaacagggtcagcagggcccagagggagaagcaggtccaacaggacctcgggga
ccaccgggtagcagaggggagacaggtcctgcaggtcctccaggtttaccagggaagttg
ggtccccagggtagtattggacttcctggactgcctggtcctccaggccttcctggtggt
aaaggtgaccggggttcggtgggtgaaccaggacctaagggtgaacaaggtgtacctgga
gcagaaggagatggaggagaaaagggtgacttaggtgacatgggattaccaggagcaaag
ggagctgttggtaatcctggagaccctggttcccgcgggcctgaggggagtcgggggctc
cctggcatggaagggccacgtggctcacctggaccacgaggcttgcagggtgagcagggt
gccccaggcctgcctggcagtgaaggtccagctggaaaagaaccaagtgatcagcacata
aagcaggtttgcatgagagtcatgcaagaacaattggctcagctggcagccagccttagg
aggccagaatttggtgctccaggtcttcctggccgaccagggcctccaggtgctccagga
cctgctggtgaaaatggtttcccaggtcagcttggcccccgtggcctgcctggcctgaaa
ggtccccctggtgacattggtcgtaaaggtcctaaaggtgaaccaggagaaagaggagaa
agaggatttccaggcagaggattgaaaggttatcctggaccaagaggtcttccaggtgaa
ccaggcaaagccagctacgggcaggagggccgtgacggtgaccgaggtccgcctggggtg
gccgggcagcctggggtccccgggcccccgggccctcctggccctcctgggtactgcgag
ccagcctcctgcaggatgcaggcgggacagagagcagggaagaacatgaaagggccctga
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