Zonotrichia albicollis (white-throated sparrow): 102069953
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Entry
102069953 CDS
T07911
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102069953 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102069953 (CNOT1)
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102069953 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102069953 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102069953
NCBI-ProteinID:
XP_005490804
Ensembl:
ENSZALG00000007798
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGISLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcgccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctctaccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacggatggtatttcattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtg
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaggtagtgacatatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcatattgtagtttttggc
atccagagagggctgggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgagcaggtgaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtgttggccttactgcagatcaacacgtcctggcacaccttgcgccat
gaactcatctccaccctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aaaagaagatgtccatctatcctgggtggccttgctccagaaaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcttgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagcaaactgcagcaatgtc
atgaacaaggctcggcagcccccgcctggagtcatgcccaagggacgcccacccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctccccacacccagagcatgcaaggcttccctccaaacctg
ggctctgcattcagcactcctcagtcaccagcaaaagccttcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggagggctttcctcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggagtatcgg
ttcttcccgcagtacccagacaaggagctgcacatcacagcctgtctcttcgggggcatc
atcgagaaaggactggtcacttacatggcactgggcctggccctgcgctacgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagagtatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccaccgtggcaaaaaccattaccatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatctttaataatctgtcccagtcaaatatgacacagaaggtggaagaactgaaggag
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcatagcttgtattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttgaagaaccttggtcactggctggga
atgataacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcacta
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctacatcaggaacatgatctaaaactgaatctgaag
tttgagatcgaggtgctctgcaagaatcttgcactggacatcaatgagctgaaacctgga
agcctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaaccactgcttctacaacc
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagctaccat
gacatcaacgtctattctttaggaggcttggctccacacattaccttaaatccaacgatc
ccgctgttccaagcgcacccgcagctgaagcagtgtgtgcggcaggccatcgagcgggcg
gtgcaggacctcgtgcatcccgtggtggacaggtccatcaagattgccatgaccacctgt
gagcagatagtcaggaaggactttgccctggattccgaggagtcccggatgcgtgtggcc
gctcaccacatgatgaggaacctgactgctggcatggccatgatcacctgcagggagcct
ttgctgatgagcatagcgaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagctagcccaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgagttcgagctcaggaagcacgcgaggcaagaggggcggcgctac
tgcgatcccgttgtgttaacgtaccaggctgagaggatgccagagcagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctactgatgatgtagcacagatttatgacaaatgtatgacagaactggag
cagcacctgcaatccattccacacaccctggccatgaatcctcaggtccaagcactgcgc
agcctcctggaggcggtggtggtggctcggaactcccgggatgcgattgctgcacttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagcggggctgacgctgacctc
ctgctccgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgtgcc
tatggatctccgtggtgtaacaaacaaatcactaggtgcctgattgaatgcagagacgag
tacaaatacaacgtggaagctgtggagctgctgatccgcaatcaccttgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgtaaca
gaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagagga
aacgccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttct
gagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttccgt
ctctgcaccgaaatgtgtgttgagatcagctatcgagcgctggccgagcagcagcacaac
cctgctgccaaccccaccatgattcgagccaagtgctaccacaacctggatgcctttgtg
cgactcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaagatc
aacctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgtt
cggcagagtgagttccagcagcttccttaccatcgcattttcatcatgttgctgttggaa
ttaaatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggc
tggcctatgtatgcccagttattgatcgatctattcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttataagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtg
atcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaatatt
gctccacgaatactcacaaatttcactggagtgatgccacctcagttcaagaaagatttg
gattcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgaagcaaccta
caagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgcactggtgctc
tacgtaggtactcaagctattgcacacattcacaacaaaggcagcacaccctccatgagc
accattacccactcagctcacatggacatcttccagaatttggcagtagacctggatact
gaaggccggtacctcttcctgaacgccatcgccaaccagctgcgctaccccaacagccac
acccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggccatc
caggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctgg
ggtctccttatcacgtttattgagctgatcaaaaatccagcctttaagttctggaaccat
gagtttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacagtgctgc
atggggcagaagcaggctcagcaagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
