Zhongshania aliphaticivorans: AZF00_02110
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Entry
AZF00_02110 CDS
T04315
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
zal
Zhongshania aliphaticivorans
Pathway
zal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AZF00_02110 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zal03021
]
AZF00_02110 (rpoB)
03400 DNA repair and recombination proteins [BR:
zal03400
]
AZF00_02110 (rpoB)
Enzymes [BR:
zal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AZF00_02110 (rpoB)
Transcription machinery [BR:
zal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AZF00_02110 (rpoB)
DNA repair and recombination proteins [BR:
zal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AZF00_02110 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AMO67165
UniProt:
A0A127M1R5
LinkDB
All DBs
Position
487519..491595
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKMPHVMDVPYLLAIQLDSYKKFTQQGVPAGERGEYGLHAAFKSI
FPIVSYSGNAALEYVDYVLGVPAFDVNECQLRGVTYSVPLRVKVRLIIYDRESANKSIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDMVFVRIDRRRKLPATILLRSLGMTAEEILELFYDVNTFKVAKKG
GFTIELIAERLRGEVATFDIAAKNGEVIVETGRRITARHIRQIEKSGLKELEVPVEYLVG
RALAKDIVDKKTGEVLFPCNTLITAEILTALEEADVKEIDTLYTNELDCGPYVSDTLRAD
PTNTQLEALVEIYRMMRPGEPPTKESAENLFQNLFFSPERYDLSTVGRMKFNRRVGREEI
LGAGTLDQSDIIAVMKMLVGIRNGKGIVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPYRKV
KDGKVSDDIEYLSAINEAEEVIAQASAVMNEKGELTDEMVAVRHMNEFTVMPPEKVTYMD
VSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGFERYVASDSGV
CVVARRGGVIDSVDSSRIVVRVNNDEVQPGQPPVDIYNLTKYTRSNQNTCINQRPIVSEG
HDVVRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIQ
ELTCIARDTKLGSEEISADIPNVGEGALASLDESGIVYIGAEVGPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPTSTKGTVIDVQVFTRDGLEKDKRALEIEKMQLD
QFRKDLNEEYRIVEEATFARLSTALDGQAILSGPGMKKGDVLTAAGLAEIKTDDWFKLRL
ADETLNAALEDADKQLVAHRKTLEERFEDKRRKLTTGDDLAPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISVIMPVEDMPFDENGEPVDIVLNPLGVPSRMNVGQVLETHLGLAAK
GLGSKIDAMIREQRQIADVRKFLGEIYNDGAGRHEDLDSFSDEAIMDLAKNLRGGVPMAT
QVFDGANEAEIKSLLRLAGLPDSGQLKLCDGRTGLEFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDQSMEPGMPESFNVLVKEIRSLGINIELDTE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcgtacactgagaaaaaacgtatccgtaaggattttggcaagatgccgcac
gtcatggacgtgccctatctccttgcgattcagctggattcttacaagaagttcacccag
cagggtgtccctgccggtgagcgcggcgagtatggtttgcacgccgcatttaaatcaata
ttcccgatagtgagttactccggcaatgcagcgctggagtatgtcgattacgtacttggc
gtgccggccttcgatgtaaatgagtgccagctgcgcggcgtaacgtattctgtgccgctg
cgagtcaaagttcgtttgatcatctatgatcgcgaatcggccaacaaaagcatcaaagat
attaaagaacaagaagtctatatgggcgaaatcccattaatgactgaaaacggtactttt
gttatcaatggtactgagcgggttatcgtttctcagttgcaccgctcacctggtgtgttc
ttcgatcacgaccgtggcaaaacccactcgtcgggcaagctgctgtactcagcgcggatc
attccctaccgtggctcttggttggatttcgagtttgacccgaaagacatggtgtttgtg
cgtatcgatcgccgtcgtaaattgccggccacgattctgttgcgctcattgggtatgacg
gcagaagagattcttgaactcttctacgacgttaacacctttaaggttgccaaaaaaggc
ggctttactattgagttgatcgctgagcgtctacggggtgaagtagcgacttttgatatt
gctgctaagaacggcgaagttatcgttgagactggccgccgtattactgcccgccatatt
cgccagattgaaaagtcaggcttgaaagagttagaagtacctgttgagtacttggtcggc
cgcgcgctggccaaagatattgtcgacaaaaagaccggcgaagtgctcttcccttgtaat
accttgattactgcggaaattcttactgcgcttgaagaagctgatgtcaaagaaatcgac
acgctctacaccaacgagctggattgcggaccgtatgtcagcgataccttgcgcgctgac
ccaaccaatacccagttagaggcgttggtcgaaatctaccgcatgatgcgtcctggcgag
ccgccaaccaaagagtctgcagagaatttgttccaaaacttattcttctcgccagagcgt
tatgacctgtctactgttggtcggatgaagtttaaccgccgcgtcggtcgcgaagagatt
ttgggtgcaggcaccttggaccaaagcgacatcatcgctgttatgaaaatgctggttggc
attcgtaacggtaagggcattgtcgacgatatcgatcacctcggtaaccgtcgtattcgc
tctgttggggaaatggctgagaaccaattccgtgttggtctggtacgggtagaacgcgct
gttaaagagcgtctgtctatggcggaaagtgaaggcctgatgcctcaggacttgatcaat
gccaagccggttgccgctgctgtaaaagagttctttggctcgtcacagctgtcgcagttt
atggaccaaaacaacccgctgtcagaaatcacccacaagcgtcgtgtttctgcgcttggg
cccggcggtctgacccgcgagcgcgctggctttgaagtccgcgacgttcacccgacgcac
tacggccgggtatgccctattgaaacgccagaaggaccaaacattggtctgattaactca
ttggcgacctatgcgcgtaccaatgagtatggtttccttgaaagcccttaccgcaaagtt
aaagacggtaaagtaagcgacgacatcgagtatttgtcggcaatcaatgaagctgaggaa
gttatcgctcaggcctcagcggtcatgaacgaaaaaggcgagctgaccgacgaaatggtt
gcggttcgtcacatgaacgaatttacggtaatgccaccggaaaaagtaacctacatggac
gtttcgcccaagcaggttgtttcggtagcggcgtctttgattccgttcttagagcacgat
gatgctaaccgcgccttgatgggttcgaacatgcagcgccaggctgtgccgacgctcaag
gccgataagcctttagtcggtactggttttgaacgctatgtggcgtctgactccggtgtg
tgtgtggttgctcgccgcggcggtgtaattgatagcgttgactcttcacgtatcgttgtt
cgtgttaacaacgacgaagtgcagcctggtcagccaccggtagatatttacaacctgact
aaatacacccgttctaaccagaacacctgtattaatcagcgtccaattgtaagtgaaggt
cacgacgttgtgcgtggcgacattctggccgatggcccgtctgttgatatgggtgagctg
gcactaggtcagaacatgcgtatcgcgtttatgccttggaacggttacaacttcgaggat
tcgatccttgtctctgagcgcgtggtgaaagaagatcgcttcactaccattcatattcaa
gaattgacctgtattgcccgcgacaccaaattgggttcagaggaaatctctgcagatatt
cccaatgttggcgaaggcgcgctggcgagtctcgacgagtccggtatcgtgtatatcggt
gctgaagtcggtcccggcgatattctggttggtaaggttacgcctaaaggcgaaacccag
ttaacgccagaagaaaaattactacgtgctatttttggtgagaaagcctccgacgttaaa
gatacttccctgcgtgtgcctactagcaccaagggtactgttatcgacgttcaggttttc
acccgcgacggtcttgaaaaagacaagcgcgcactggaaattgaaaaaatgcagctcgac
cagttccgtaaggatctgaacgaagagtaccgcattgtcgaagaagcgacctttgcgcgt
ttgtctacggccttagatggtcaggcgatcctaagtggtcccggcatgaagaagggcgat
gtcctgaccgctgctggcttggctgagattaagactgacgattggttcaagttgcgtctg
gctgacgagaccttgaatgccgcactggaagacgccgacaagcagctggttgcgcatcgc
aaaactttggaagagcgttttgaagataaacgccgcaagctgacgactggcgacgatttg
gcgccgggcgtactgaaaatagttaaggtttacttggctatcaaacgtcgcattcagcca
ggtgataaaatggctggtcgtcacggtaacaagggtgttatctcggtcattatgcctgtt
gaagacatgccttttgacgaaaacggcgagccggtcgatatcgtcttgaacccactgggt
gtaccgtcgcggatgaacgtaggtcaggttcttgagactcaccttggcctcgcggcgaaa
ggtttgggtagcaagattgacgcaatgattcgtgaacagcgtcaaattgccgatgttcgt
aagttcctgggcgaaatctacaacgatggcgcaggtcgtcacgaagatctcgacagcttc
agcgatgaagcgattatggatcttgccaagaacctccgtggcggtgtgccaatggcaact
caggtattcgacggtgctaacgaggcagaaattaaaagtctgctacgcttagcaggtctg
ccagacagcggtcagttgaagctgtgtgacggtcgtaccggtctggaattcgatcgcccg
gttactgtcggctatatgtacatgctcaagttgaaccacttggttgatgacaagatgcat
gcgcgttctactggttcgtacagcttggttacccagcagccattgggtggtaaagctcag
ttcggtgggcagcgcttcggggagatggaagtgtgggcactagaagcttacggtgccgcc
tataccctgcaggaaatgctaacggtgaagtcggacgacgtaaacggtcgtaccaagatg
tacaaaaatattgttgatggtgatcagagcatggagccgggtatgcccgagtctttcaat
gtattggtcaaagagatccgctcactcggtattaatatcgagctggacacggaataa
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