KEGG   Ziziphus jujuba (Chinese jujube): 107419031
Entry
107419031         CDS       T04794                                 
Name
(RefSeq) cleavage stimulation factor subunit 50
  KO
K14406  cleavage stimulation factor subunit 1
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107419031
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107419031
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     107419031
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 107419031
NCBI-ProteinID: XP_015883234
UniProt: A0A6P3ZQT0
LinkDB
Position
2:complement(join(21483248..21483403,21483479..21483535,21483878..21483986,21484162..21484316,21484426..21484526,21485153..21485210,21485341..21485392,21485625..21485695,21486898..21486984,21487084..21487167,21487290..21487362,21488034..21488140,21488259..21488342,21488838..21488936))
AA seq 430 aa
MESSLEQTLQDGKLFRQLNSLIVAHLRDNNLNQAASAVARATMTPLNVEAPPNRLLDLVA
KGLAVEKDEVLRGISSSVLHDLSASIPAPRTGAVDFSSVQETKGSSKSFPKHETRHLSEH
KNIARCARFSPDGRFVATGSSDTSIKLFEVAKIKQMMVPDARDAPVRPVIRTFYDHLLPI
NDLDFHPQSTVIISGAKDHTIKFFDFSKITAKRAFRVIQDTHNVRSVSFHPSGDFILAGT
DHPIAHLYDVNTFQCYLSANVPEIGANGAINQVRYSTTGSMYVTASKDGAIRLWDGITAN
CVHSIVGAHGTAEATSAIFTKDQKFILSCGKDSSVKLWEVGTGRLVKQYLGATHTQLRCQ
AVFNDTEEFILSIDETSNEIVVWDALTAEYVARWPSNHVGAPRWLEHSPTESAFVSCGTD
RSIRYWKEIF
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggagagcagcttggagcagactctgcaggatgggaagctcttcaggcagctcaattct
ctcattgttgctcatcttcgtgacaacaatctcaatcaggctgcaagtgccgtcgctaga
gcaacaatgacaccgttgaatgttgaagccccacctaataggcttcttgatctggttgct
aagggtcttgcagtggaaaaagatgaagttttaagaggcattagttcgtctgtactgcat
gatttgagtgcatctatccctgctcctcgaactggtgctgtagacttcagttctgttcag
gaaacaaaaggctcatcaaagagttttcctaagcatgagacaaggcatctttcagagcac
aagaatattgccagatgtgctagatttagtcccgatgggagatttgttgccactggaagt
tctgatacctcaataaagctttttgaggtagcaaagattaagcaaatgatggtaccggat
gcaagagatgctcctgtgagacctgtcatacggaccttttatgaccatctactgccaatt
aatgatctggattttcatcctcaaagcactgttattatatctggggccaaagatcacaca
ataaagttctttgatttttccaagatcactgcaaagagagcatttagagttatacaggat
acacacaatgtacgctctgtgtctttccatccttctggggattttattttagcaggaact
gatcatccaattgctcacttgtacgatgtgaatacgttccagtgttacctatctgcaaat
gttccagagattggagctaatggagcaataaatcaggtcaggtattccactacaggtagc
atgtatgttacagcttctaaagatggagcaattcgtctatgggatgggataactgccaat
tgtgtacactccatagttggtgcacatggaacagctgaggccaccagtgcaatttttact
aaggatcaaaagtttattctctcttgtgggaaagactcttctgtaaaactctgggaagtt
ggcactgggagattagtcaaacaataccttggagctacacatacacagttgcggtgtcag
gctgttttcaatgacactgaagaatttattctatccattgatgaaacaagcaatgagatt
gttgtgtgggatgctttgactgcagaatatgtagcaagatggccctccaatcatgttggc
gctcctcgttggctcgaacactcaccaacagagtctgcattcgtctcctgtgggactgat
agatcaatccgttactggaaggaaattttctaa

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