KEGG   Ziziphus jujuba (Chinese jujube): 107422808
Entry
107422808         CDS       T04794                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
zju04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107422808
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107422808
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107422808
   04121 Ubiquitin system [BR:zju04121]
    107422808
   03400 DNA repair and recombination proteins [BR:zju03400]
    107422808
Enzymes [BR:zju01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107422808
Spliceosome [BR:zju03041]
 Complex B
  Other components
   Prp19 complex
    107422808
 Complex C
   Prp19-CDC5 complex
    107422808
Ubiquitin system [BR:zju04121]
 Ubiquitin ligases (E3)
  U-box type E3
   107422808
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    107422808
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_EML Beta-prop_SCAP Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_DCAF12 RMC1_N U-box Beta-prop_DCAF4 WD40_like zf-Nse Beta-prop_ACSF4 PAS_11 KNTC1_N V_ATPase_I_N PUMA_CC
Other DBs
NCBI-GeneID: 107422808
NCBI-ProteinID: XP_048334064
UniProt: A0ABM3IRM4
LinkDB
Position
3:complement(join(21266528..21266643,21266738..21266808,21267270..21267321,21267468..21267564,21267640..21267717,21267804..21267920,21268278..21268382,21269217..21269291,21269486..21269545,21269627..21269722,21270616..21270732,21270932..21271050,21271139..21271280,21272024..21272110,21272347..21272409,21272740..21272811,21273658..21273743,21273850..21273862))
AA seq 521 aa
MNCAISGEVPEEPVVSRTSGLLFEKRLIERHISDYGKCPITGEPLTMDDVIPIKTGKIVR
PRPVQAASIPGMLGMFQHEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERPLPASTGVAVNASALSNGRTAPDDELGPAGTKVRPGISANIFNELT
ECNAALSQQRKRREIPPTLAPSEDIERYTQISSHPLHKTNKPGITSIDIHQKKDIIATGG
FDTNAVIFDRSSGQILSTLSGHSKKVTSVKFVARDDFFLSGSADKTVRIWQGSDDGNYNC
SHILKDHDAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLTQVNDPSGTDGYTSAAF
HPDGLILGTGTTEAIVKIWDVKSQSNVAKFDGHAGAVTAISFSENGYFLATAASDGVKLW
DLRKLRNFRTFAPYGPDTPTNSVEFDHSGCYLGIAGSDIRVHQVATVKAEWNVIKTFPDL
SGTGKITSVKFGPDAKYIAVGSMDRNLRIFGLPGDNDAMES
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgaattgcgcaatctccggcgaggtgccggaagagcccgtggtctccaggacttccgga
ttgctctttgagaagcgtttaatcgagagacatatctctgattatggaaaatgcccaata
actggggaaccacttactatggatgacgttattccaatcaaaacaggcaagatagtgcgg
cccagacctgttcaagctgctagcatccctggcatgcttggaatgtttcagcatgaatgg
gatagtttgatgttatccaactttgcattggagcaacaacttcatacggcaaggcaggag
ttaagtcatgctttataccagcatgatgctgcttgccgtgtgattgcaagactaaaaaag
gaaagggatgaagcaagatcattacttgctcaggctgagagaccattgccagcatcaaca
ggagttgctgtaaatgcctctgcccttagcaatgggagaacagcacctgatgatgaattg
ggccctgctgggacgaaagtacgtcctggaatatctgccaacatctttaacgagttaact
gaatgtaatgctgctctttcacagcagaggaaaaggcgggagataccgccaacattggct
cctagtgaggatattgagaggtacacccagatatctagtcatcccttacataaaacgaac
aaaccaggcataacatccattgatattcatcaaaagaaggacatcattgcaactggtggt
tttgatacaaatgctgtcatatttgaccggtcatctggacagatattatctactcttagt
ggtcattcaaagaaggttactagtgtaaaatttgtagctcgagatgatttcttcttaagt
ggttcagcagacaagacagtgcgaatatggcaaggatctgacgatggaaactataactgc
agccacatcctgaaagatcatgatgctgaggtgcaagctgtcacagttcatgccacaaat
aactactttgtgactgcttctcttgacaacacatggtgcttctatgaactttcatcggga
ttatgtcttacacaggtcaatgacccttcaggaacagacggctatacatctgcagctttt
catccagatggtctcatccttggaacaggcaccacggaggctattgttaaaatctgggac
gtaaaaagtcagtcaaacgttgccaaattcgatggacatgctggggcagtaactgccata
tctttttcagaaaatggttacttccttgcgactgcagctagtgatggtgtgaagctttgg
gatctacgaaagttgaggaacttcaggacatttgctccatatggtccagatacaccaacg
aattctgttgaattcgaccatagtggatgctaccttggcattgcggggtcagatataaga
gttcaccaggttgccactgttaaagctgaatggaatgtcatcaaaactttccctgatttg
tctggcacaggtaaaattacatctgtaaagttcggtccagatgcaaaatacattgcagta
ggatcaatggaccgaaacctccgtatttttggccttcctggggataatgatgcaatggag
tcttga

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