KEGG   Ziziphus jujuba (Chinese jujube): 107426344
Entry
107426344         CDS       T04794                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107426344
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107426344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107426344
   03041 Spliceosome [BR:zju03041]
    107426344
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107426344
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107426344
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107426344
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107426344
NCBI-ProteinID: XP_015891977
UniProt: A0A6P4B0Z8
LinkDB
Position
9:complement(join(2070071..2070093,2070359..2070523,2070818..2070857,2071178..2071255,2071355..2071453,2071575..2071616,2071796..2071798))
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGRDDGPGRQAKGIGRGLDDG
SAKGAGGGRGRGGSGGKAGGARGGGRGRA
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcccctttctctacttaagactgcccaagggcacccaatgttggtagaacttaaa
aatggggagacatacaatgggcatttggtcaactgtgatacttggatgaacattcatctc
cgtgaagtcatttgtacatctaaagatggcgataggttttggcgaatgcctgaatgctac
atccgtggtaatacgatcaagtatcttcgagttcctgatgaggtgattgataaagttcag
gaagaaaccaagagccggtcagataggaaaccacctggagtagggcgcggaagagggaga
ggtagggatgatggtcctggacgacaggcgaaaggaattggacgtggacttgatgatggg
agtgctaaaggtgctggtggaggccgtggcagaggtggatcaggaggaaaggcgggtgga
gccagaggtggggggcgagggcgagcttga

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