Ziziphus jujuba (Chinese jujube): 27963826
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Entry
27963826 CDS
T04794
Symbol
rpoB, A9277_gp077
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
27963826 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zju03021
]
27963826 (rpoB)
03400 DNA repair and recombination proteins [BR:
zju03400
]
27963826 (rpoB)
Enzymes [BR:
zju01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
27963826 (rpoB)
Transcription machinery [BR:
zju03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
27963826 (rpoB)
DNA repair and recombination proteins [BR:
zju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
27963826 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
27963826
NCBI-ProteinID:
YP_009256319
UniProt:
A0A172QDD5
LinkDB
All DBs
Position
CP:complement(25030..28242)
Genome browser
AA seq
1070 aa
AA seq
DB search
MAGDGTEEMSTIPGFNQIQFEGFCRFIDRGLTEEFSKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSSLREILENVCYPEIFLSFLNDKEKKKIKSKENAILEFYQQFACVGGDPVFS
ESLCKEVQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARCGHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVA
AGNSLALNRGIQEEQVVPARYRQEFLTIEWEEVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVLAIAEHEGKIIYTDTDKILLSGN
GDTLSLPLVIYQRSNKNTCMHQKTQVARGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLINERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEAHLLRNL
DKKGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKKRGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKDA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggctggggatggaactgaggaaatgtctacaatacctggatttaatcagatacaattt
gaagggttttgtagattcattgatcggggcttaacagaagaattttctaagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggta
gaaccgttgataaaagaaagagatgctgtatatgaatcactcacctattcttctgaatta
tatgtatccgcgggattaatttggaaaactagtagggatatgcaagaacaaacaattttt
attggaaacattcctctaatgaattccttaggaacttctatagtaaatggcatatacaga
attgtgatcaatcaaatattgcaaagccccggtatctattaccggtcagaattggaccat
aacggaatttcggtctataccggcaccataatatcagattggggaggaagattagaatta
gagattgatagaaaagcaaggatatgggctcgtgtgagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcgagtctaagagaaattctagagaatgtttgttac
cctgaaattttcttgtctttcctgaatgataaggagaaaaaaaaaattaagtcaaaagaa
aatgccattttggagttttatcaacaatttgcttgtgtaggcggagatccggtattttct
gaatccttatgtaaggaagtacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccgtagactgaatcttgatataccgcagaacaatacattt
ttgttaccgcgagatatattggccgctgcggatcatttgattggaatgaaattcggaatg
ggtacacttgacgatatgaatcatttaaaaaataaacgtattcgttcggtagcggatctc
ttacaagatcaattcggattggccttggttcgtttagaaaatatggttagaggaactata
tgtggagcaattaggcacaaattgataccgactcctcagaatttggtaacttcaactcca
ttaacaactacttatgaatcttttttcggattacacccattatctcaagttttggatcga
actaatccattgacacaaatagttcatggtagaaaattgagttatctgggccctggagga
ttgacagggcgaactgccagttttcggatacgagatatccatcctagtcactatggacgc
atttgccctattgacacgtctgaaggaatcaatgttggacttattggctccttagcaatt
catgcgaggtgtggtcattgggggtctttagaaagcccattttatgaaatctcggagaga
tcaaaaaaagtacggatgctttatttatcaccaagtagagatgaatactatatggtagcg
gcagggaattctttggcactgaatcgaggtattcaggaagaacaggttgttccggctcga
taccgtcaagaattcctgactattgaatgggaagaggttcatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctcattccttttatcgagcataatgatgcgaat
cgagctttaatgagttctaatatgcaacgtcaagcagttcctctttctcggtccgaaaag
tgcattgttggaactgggttggaacgccaagtagctctagattccggggttctcgctata
gccgaacatgagggaaagatcatttataccgatactgacaagatccttttatcaggcaat
ggggatactctaagccttccattagtgatatatcaacgttcgaacaaaaatacttgtatg
catcaaaaaacccaagttgcgcgaggtaaatgtattaaaaagggacaaattttagcagat
ggtgctgctaccgttggcggcgaactcgctttgggaaaaaacgtattagtagcttatatg
ccatgggaaggttacaattctgaggatgcggtactcattaatgagcgtctggtatatgag
gatatttatacttcttttcacatacggaaatatgaaattcagactcatgtaacaagtcac
ggtcctgaaagaatcactaatgaaataccgcatctagaagcccatttactccgaaattta
gacaaaaaaggaattgtgatgttggggtcttgggtggagacgggtgatattttagtaggt
aaattaacgccccagatggcgaaagaatcatcgtatgctccggaagatagattattacga
gccatccttggcattcaggtatccacttcaaaggaaacttgtctaaagttacctatcggc
ggtagaggtcgagttattgatgtgagatggatccagaaaaaaaggggttctagttataat
ccagaaacgattcgtgtatatatttcacaaaaacgtgaaattaaagtgggggataaagta
gctggaagacatggaaataagggtatcatttcaaaaattttacctagacaagatatgcct
tatttgcaagatggaagacccgttgatatggtcttcaacccattaggagtaccctcacgc
atgaatgtaggccagatatttgaatgctctctcgggttggcgggaagtctgctagataga
cattatcgaatagcaccttttgatgagagatatgaacaagaggcttcgagaaaactagtc
ttttctgaattatatgaagccagtaagcaaacagcgaatccatgggtatttgaacccgag
tatccgggaaaaagcagaatatttgatggaagaacgggggatccttttgaacaacctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacatgga
cgttctagcggacattatgcacttgttacacaacaaccacttagaggaagggccaagcag
ggggggcagcgggtaggagaaatggaagtttgggctctagagggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagctcgccaagaagtactt
ggtactacaatcattggaggaacaatacctaaaccggaggatgctccagaatcttttcga
ttgctcgttcgagaattacgatctttggctctggaattgaatcatttccttgtatctgag
aaaaacttccagattaataggaaggacgcttaa
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integrated database retrieval system
