Zonotrichia leucophrys gambelii (white-crowned sparrow): 135449434
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Entry
135449434 CDS
T09958
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135449434 (COL13A1)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135449434 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135449434
NCBI-ProteinID:
XP_064572510
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Position
6:complement(33080198..33133017)
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AA seq
671 aa
AA seq
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MGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKLLPLLNSVRLA
PPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPPGPAGPEGIPGRPGPVGPAGRAGEPGKPG
RDGKGLPGPPGPKGDAGIQGYPGRKGEVGEAGLPGARGLPGASGPKGEKGDAGIKGERGM
PGLPGRHGSKGAPGLAAAGMKGEPGTPGEKGDSGVPGRMGPPGVPGKRGQRGEKGRAGDP
GIPGLPGPKGEKGIAENALVGAKGEPGPPGLPGPPGPKGEAGDVGQPGAAGSQGEKGERG
SPGDQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQK
GEIGLPGPPGHDGEKGPRGKPGEMGPPGPQGLPGKDGAPGMKGEPGPAGGRGEKGDRGEP
GEAGPPGLDGPTGEKGEQGDQGMPGPSGLPGPIGLPGLTVSGPPGPQGPPGPPGLQGVPG
PKGEAGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPAGIPGPIGASGPAGPKGERG
SKGDPGVAGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGE
DGLPVQGCWNK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggactaaaggggcaatctggagagaagggtgctccagga
gaagctggcatgtccatcattgggccccgtggcccacccggacagcctggaacaagaggt
tttcctggattcccgggccctattggcttggatggcaaaccggggcatcctggacagaag
ggagagatgggtgctgcaggtcccaggggacagcctgggcccccaggacaaaaaggagag
aagggtcagtgtgcagagtacccgcacagggagtacctaagtaccaccctcgcagccctg
cgctctaaccagatccttacgctcaagctgctgcctctcctcaattcagtgcggctggct
ccacctccggtcataaagagacgcactttccagggtgaacagggacaggcagggatccaa
gggcccccggggccccctggcccaccagggccccctggaccagctggacctgaaggaatc
ccaggacgtcctgggccagttggacccgctggcagagcaggagaacctgggaagcctggc
agagatggaaagggcttacctgggcctcctggaccaaagggagatgctggcattcagggg
taccctggcagaaagggtgaggtgggtgaggcaggcctgcccggtgcccgtggcctccct
ggagcctctggccccaagggtgaaaaaggggatgctggcatcaagggggagagaggcatg
ccagggctgccaggaagacatggctctaagggcgctccggggctggcggccgcagggatg
aagggcgagcctgggactccaggagaaaagggagattctggagtgccaggcaggatgggc
cccccaggtgtgccagggaagagggggcagcggggtgagaagggacgagctggtgaccct
ggaattcctggacttcctggcccaaagggagagaagggaattgctgagaatgccttggtg
ggagctaaaggagaacctggccctccaggtctgcctggaccccctggaccaaagggagaa
gctggtgacgttggtcagcctggtgctgcaggatcacagggagaaaagggggaacgtggc
tcaccaggagaccagggacccatgggcccaaggggccccaaaggagagcctgggaaggat
gaaatgatggactatgatgggaacatcagtgaagctctgcaggaaatacgaactttggcc
ttgatgggacccccaggacgtccaggtgtggctgggcctccagggccaccaggacagaag
ggtgaaattggcttgccaggtcctccaggccacgatggagaaaagggcccacgtggcaag
cctggagaaatgggtccccctgggcctcaggggctgccagggaaggatggagctcctggc
atgaagggagagccaggccctgctgggggcagaggagagaagggtgacaggggagagcca
ggagaagcaggcccaccgggtctagatggccccactggagagaagggagaacaaggtgac
caagggatgccaggaccatcaggattgccagggcccattggacttccaggactgacagta
tctgggccccctggcccccagggccctccaggacctccaggtcttcagggtgtcccagga
cccaagggggaagcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaa
ggagaccgagggccgctgggattacccggtgcttcaggtttagacggcaggcctggacca
gcgggtattccaggaccaattggggcttcgggaccagcaggaccaaaaggagagaggggc
agtaaaggagaccctggagttgcaggaccaatggggccagcagggcttcctggtttacaa
ggtctacctggtgacaagggagtccggggggagaggggcaagaaaggctctagagggtct
aaaggggataagggagaccaaggagcacctggattagatgcaccctgtccgttgggagaa
gatggccttccagttcaaggctgctggaataagtga
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