Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450303
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Entry
135450303 CDS
T09958
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04518
Integrin signaling
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135450303 (COL6A3)
04518 Integrin signaling
135450303 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135450303 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135450303 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zle04147
]
135450303 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135450303 (COL6A3)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135450303 (COL6A3)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135450303 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
135450303 (COL6A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
fn3
Ig_J
Motif
Other DBs
NCBI-GeneID:
135450303
NCBI-ProteinID:
XP_064574417
LinkDB
All DBs
Position
7:complement(9815976..9874278)
Genome browser
AA seq
2932 aa
AA seq
DB search
MRKHRHLPLLAMFCLLLLGFGSVGAQQQAAQESADLIFLIDGSNNIGGVNFPAIRDFLVN
LIESLRVGAQQIHIGVVQYSDQPRTEFPLSSYSTKADVLDAVKALGFRGGEEANTGAALE
FVVENLFTQAGGSRIEEAVPQILVLISGGESSDDIREGLLAVKQAGIFSFSIGVLNADSA
ELQQIATDGSFAYTALDIRNLDALQELLLPNIVGVAQRLILLAAPTIVTEVIEVNKKDIV
FLIDGSTALGAAPFNAIRDFVAKIVQRLEVGPELIQVAVAQYADTVKPEFYFNTHQTRKD
VMANVRKMKPMGGTTLNTGSALEFVRTNFFTSAAGCRVEEGVLPMLVLITGGKSRDAVDQ
AAAELKRNRIVTLAVGSRNADLAELQEIAHEQDFVFNPNDFRLQFMQAILPEVLSPIRTL
SGGLLVPEPPSVQVTKRDIIFLLDGSLNVGNANFPFVRDFVADLVNYLDVGSDKTRVGLV
QFSDTPQTEFSLYSYQSKADIIQRLGQLRPRGGSVLNTGSALNFVLSSHFTGAGGSRINE
QVPQVLVLVAAGSSADPFLQVSNELARAGVLTFAVGVRNADKAELEQIAFNPRMVYFVDD
FSALAALPQELNKPITTYVSGGVEEVPLAPTESKKDVLFLIDGSANLLGIFPAVRDFVHK
VISDLNVGPDATRVAVAQFSDTIQIEFDFDEYSSKQDMLTKVKRMKIKTGKQLNIGAALD
EAVRRLFVREGGSRIEEGVPQFLVLLVAGRSTDNVEEPSDVLKHAGVVTFGIRAKNADPV
ELERIVYAPQFLLNVESLQRISELQPSIVNLLRTVQLQPGVVERGEKKDVVFLIDGSDGV
RRGFPLLKTFVQRVVESLDIGRDKVRVAVAQYSNTIQPEFLLDTHEDKADLISAIQQLKL
MGGSPLNTGAALDYLIKNVFTVSSGSRIAEGVPQFLILLTADRSQDDVRRPSVVLKTSGT
VPFGIGIGNADLTELQTISFLPDFAISVPDFSQLDSVQQVVSNRVIRLTKQEIQSLAPDL
VFTSPSPAGVKRDIVFLVDGSRYAAQEFYLVRDLIGRIVNNLDVGIDTTRISVVQFSEHP
HVEFLLNTHSTKDEVQNAVRQLRSKGGQLVNVGEALEFVAKTIFTRPSGSRIEEGVPQFL
VILSSRKSDDDFEYPSLQVKQVGVAPIMIAKNVDTEEMIQISLSPEYVFQVSSFQELPSL
EQKLLTPIETLTVDQIRRLLGDVQPPIDVSGDEKDIVFLIDSSDSVRPDGLAHIRDFISR
IVQQLEVGPNKVRIGVVQFSNSVFPEFYLKTHKSKNAVLEAIRRLRLRGGSPLNAGKALD
FVVKNYFIKSAGSRIEDGVPQHLVVILGDRSQDDVDRPARVITSTSIKPLGVGARNVDRD
QLQVITNDPGRVLVVQDFTGLSTLEKRVQNILDELPIPTTDSPGINQVGGKKQADIVFLL
DGSINLGRDNFQEVLQFVYSVVDAIYRDGDSIQVGLAQYNSDVTDEFFLKDHSTKAQILD
AINKVIYKGGRVANTGAAIKHIQERHFVKEAGSRIDQRVPQIAFIVTGGKSTDDGPRASV
EITQKGVKVFAVGVRNIDLKEVSLLASESAMSFRAATAQELSELNEQVLVTLEAAMEERL
CPGTTDVTRDCDLEVIIGFDVSDVGPGQSIFTSQRALESRMESVLNRITQMQKISCTGNQ
APNVRVAIMAQAQGGPVEGLDFSEYRPELLERFLDMRTRGPYYLRADTLRSYLSKFRSSP
AGSTKVIIHFTDGVDEPISQLEAASSTLHSEGVNALIFVGLDRVANFDRVMQLEFGRGFT
YNRPLRVNLLDLDFELAEQLDNIAERACCKVPCKCSGQRGDRGVPGPIGPKGVTGDLGYG
GYPGDEGGPGERGPPGANGTQGFQGCPGHRGTKGSRGFPGEKGELGEMGLDGIDGEEGDK
GLPGSSGEKGYSGRRGDKGVKGERGERGDRGLRGDPGDSGADNTQRGPRGQKGEIGPMGD
PGPAGPEGQNGEAGRNGMAGRRGPIGIKGTKGAPGQPGPAGEQGMRGPQGPPGQIGTPGI
RGEQGIPGPRAGSGPPGPPGDRGRIGPLGRKGEPGDPGPKGPNGQPGPRGEMGDDGRDGI
GGPGPKGRKGERGFVGYAGPKGGPGDRGVAGGPGPKGNRGRRGDAGVPGIPGQKGEIGYP
GPSGLKGEKGESRDQCALVRNIKDKCPCCYGPKECPVFPTELAFAIDTSSGVVREVFNRM
KQTVLRVVNNLTIAESNCPRGARVALVTYNNEVTTEIRFADARKKSSLLQQIQNFQATLT
TKPRSLETAMSFVARNTFKRARSGFLMRKVAVFFSNGDTRASPQLNDAVLKLYDAGVVPV
FLTSRQDAVLARALEINNTAVGHAIVLPTSGGQLNQTIQRLLTCHICLDVCDPDPRCAGT
GQRPSFRDRRAAPTDVDTDIAFILDSSESTTPLQFSEMKKYISHIVTNLEISSEPKVSQQ
HARVAVLQQAPYEHEINSSFPPVKTEFSLTDYASKEKIINYLHNQMTQLHGTRALGSAIE
HTITHVFESVPSPRDLKVIVLMMTGKVNKRELEHLQRAVISAKCKGYFFVILGIGRKVNA
KNIYSLASEPNDVFFKLVDKPGELHEEPLLRFGTLLPSFIRSEYAFYLSPEIRKQCEWLQ
NGQQIQGQHPVLVGQKAVFVAPNVTASRAFPASTTVSATIKPAASAHARTTPASTTAQAR
APQTTPATSVAQGNATAQGTASATTSHSKASGRAATTTNATGTAAGGRRRHSAKTHDIQI
TDVTESSARLRWASPEPHSTFDVTVTLAQDHSLVQRQNLTGTEHVIRGLRSGQKYAVVIT
GSQKSQHKVTYTGSFSTKTQAQGQVSLANMMLNTEPLEGPESVMDVCRLQKDEGTCRNFV
LKWYYDPETKSCARFWYGGCGGNDNRFNTQKECEKLCTPGAINPGAVTAMGT
NT seq
8799 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacatcggcatttgcccctcttggcaatgttctgcctcctgctcttgggcttt
ggctctgttggtgctcagcagcaagcagctcaagagtccgctgacctaattttccttatt
gacggatcaaacaacatcggaggtgtcaattttccagccatacgcgatttccttgtaaat
ttgattgagagcctcagagttggagctcagcagatacacattggggtggtgcagtatagt
gatcaacccagaaccgagttccctttgagcagctactccacaaaggcggatgtcctggat
gccgtgaaggcactcggattccgcgggggcgaggaggcgaacaccggtgcggcactggag
ttcgtggtggagaacctcttcacccaggcgggaggcagcaggatagaggaagcggtgcct
cagattttagtgctgataagtggtggagaatctagtgatgatatccgagagggcttgtta
gcggtgaagcaagctggtatattttcgtttagcattggggtcctgaatgctgacagtgca
gagctgcagcagattgctactgatggaagcttcgcctatactgccctggatatccgtaac
cttgatgctcttcaagaattattactgcccaacattgttggagtggcccaaagactcatt
ttgttagcggccccaaccattgtgactgaagttattgaagtgaacaagaaggatatagtc
ttcctgatagatggctcaactgctttgggggccgccccctttaatgcaatccgtgatttc
gttgccaaaattgtccaaaggctggaggttggacccgagctgatccaagtggccgtggca
cagtatgcagacactgtgaagccagagttttattttaacacccaccagaccaggaaggac
gtgatggccaatgtgaggaagatgaagcccatgggtggcacaacactcaacactggctcg
gcactggaatttgtgaggaccaacttcttcaccagtgctgccgggtgccgggtggaggaa
ggggtgctccccatgctggtgctcatcactgggggtaagtccagggatgctgttgaccaa
gctgcagcagagctgaagaggaataggatagtgacccttgccgttgggtcgagaaacgct
gacctggcagagcttcaagaaattgctcatgaacaagattttgtgttcaacccgaacgac
ttccgcctccagttcatgcaagccattcttcctgaagtgctgtcacctatccggacactc
tctggaggactgctcgtcccagagccaccctcagttcaagtaaccaaaagggatatcatc
tttcttttggacggatcactcaacgtcggaaatgccaacttcccctttgtgcgggacttt
gtggccgacctagttaactaccttgatgtcggcagcgacaaaacgcgagtgggcttagtg
caatttagtgacaccccccaaaccgagttctccctgtactcctaccagagcaaagctgac
ataatccagcgcctggggcagctgaggcccagggggggctcggtgctcaacaccggctcc
gcgctgaactttgtgctctcgagtcacttcacgggggccggtgggagcaggataaatgaa
caagtgccccaggtgctggtcctggtggcggcagggagctctgccgatcccttcctccaa
gtttccaatgaattagctcgggccggagtgctgacctttgctgtgggcgttaggaatgcg
gataaggcagaacttgagcagattgcctttaatccaagaatggtgtattttgtggatgat
ttcagtgccctggcagctttaccccaggagttaaataagcccataacaacatatgttagt
ggaggtgtggaagaggttccactcgccccaacagaaagcaagaaggatgttttattcctg
attgatggctcagccaacctcttgggcatcttccctgccgtccgggattttgtacacaaa
gtaatttctgacctgaacgtgggtcccgacgccacgcgagtcgccgttgcgcagttcagc
gacaccatccaaattgaatttgactttgacgagtactcatccaaacaagatatgcttacc
aaagtgaaaaggatgaagattaaaactgggaagcagctgaacatcggagctgcactcgat
gaggctgtaaggaggctgtttgtgagggaaggtggaagcagaatcgaagaaggggttcct
cagtttttggtcctcctcgttgctgggagatcgaccgacaatgtggaggagccatcagat
gttctgaagcacgctggagtggtaacctttggtatcagagccaaaaatgctgaccctgta
gagctggaaaggattgtttacgccccacaattccttctgaacgtcgaatccctccagcgg
atttcagagcttcagccgagcatagtcaacctgctgagaacagtccagcttcagccagga
gtagttgagagaggtgagaagaaggatgtggtgtttctgatcgatggctcggacggtgtc
agaagaggtttccctctcctgaagacgtttgtccaaagagtcgtggagagcctggacatc
ggccgcgacaaggtgcgcgtggccgtggcgcagtacagcaacaccatccagcccgagttc
ctgctggacacccatgaggacaaagcagatctcatcagtgccatccagcagctgaagctc
atgggagggtctcctctgaacacgggggcagcccttgactacctcatcaagaacgtgttc
acggtgtcaagcggcagcaggatagcggagggtgtcccgcagttcctgatcctgctgact
gctgaccggtcccaggacgatgtcaggaggccctcagtggtcctgaagacgagcggcacg
gtgccctttggcattgggattggaaatgccgacctcacagagctgcagaccatttccttc
ctcccagattttgctatctctgtgcccgacttcagccagctggactcggtgcagcaggtc
gtctccaacagagtcatccggctgaccaagcaagagatacaatctctggcccctgacctg
gttttcacatcacccagcccagcgggcgtgaagagggacatcgtgttcctggttgacggc
tcccgctacgccgcccaggagttctacctcgtccgcgacctcatcgggaggatcgtcaac
aacctggacgtgggcatcgacaccaccaggatctcggtggtgcagttcagcgagcacccc
cacgtggagttcctgctcaacacccactccaccaaggacgaggtgcagaacgccgtgagg
cagctgcggtccaaaggcggccagctggtgaacgtgggggaggccctggagtttgtggcc
aagaccatcttcacccggccctccgggagccgcatcgaggagggcgtcccgcagttcctg
gtcatcctctcctcccgcaagtccgacgacgactttgagtacccgtccctccaagtcaag
caagtgggggtggcacctataatgatagccaagaacgtggatactgaagagatgatacag
atttccctcagccctgaatatgtattccaagtctccagcttccaggagctgcccagcctc
gagcagaagctgctgactccgattgaaaccctgactgtggaccaaatcaggcggctgctg
ggagatgtgcagccccccatagatgtttctggagatgaaaaggacatagtcttcctcatt
gacagctctgacagcgtccggccggatgggctcgctcacattcgggatttcatcagcaga
attgtccagcagctggaagtggggccaaacaaagtgcggattggggtggtgcagttcagc
aatagcgtcttccccgagttctacttgaagacccacaagtccaaaaacgctgtcctggaa
gccatccgccgcctgaggcttagaggtgggtcccccctgaacgctggcaaagccctggac
ttcgtggtgaagaactacttcatcaagtctgcagggagcaggatagaagatggagtgccc
cagcacctggtggtcatccttggagaccggtcccaggatgatgtggacagacccgccaga
gtgatcacttccacaagcatcaaacctctgggtgtcggagccaggaacgtggacagggac
cagctgcaggtcattaccaacgatcctgggcgcgtgcttgtggtgcaggacttcacaggg
ctctcaaccttagaaaagagggtgcagaacattctagatgagctcccgatacctacaaca
gactcgcctggaataaatcaagttggaggcaagaagcaggctgacattgtgtttttgctg
gatggctccatcaatctggggagagataacttccaagaagtcctccagttcgtctactcc
gtggtggatgccatttacagggatggcgactctatccaggtagggctggcccagtacaac
tcggatgtcactgatgagtttttcctcaaggaccactccaccaaagctcagattttagac
gccatcaacaaagtcatctacaaaggcgggcgggtggcgaacaccggcgcggccatcaag
cacatccaggagaggcactttgtgaaggaggctggcagcaggattgaccagagggtgccc
cagatcgccttcatcgtcacgggtgggaagtctacggatgatgggccgagggcatccgtg
gaaatcacgcagaaaggcgtcaaggtgttcgcggtcggagtgaggaacatcgacctgaag
gaagtcagcctgctggccagtgagagcgccatgagtttcagagcagccacagcccaggag
ctgtcagagctgaatgagcaggtcctggtcacgctggaagctgccatggaggagaggttg
tgcccaggaacaacagatgtgacaagagactgtgacctagaagtgataattggctttgat
gtcagtgatgttgggcccggccagagcatcttcacttcccagcgagccctggagtccaga
atggagtctgtgctgaacaggataacacagatgcagaagatcagctgcactggcaaccag
gcacccaatgtcagggtggccatcatggcccaggcccaggggggacctgtggaggggctg
gatttttccgagtaccggcccgagctcttggagaggttcctggacatgcggacccgcggg
ccctactacctcagggcagacacactgaggtcctacctgagcaaattccgctcctcaccc
gctggcagcaccaaggtcataatccattttactgatggtgtagatgagccaataagtcag
ctggaggctgcttcgtctactttacactcagaaggagtcaacgctctcatcttcgtcggg
ctggaccgagtggccaactttgacagagtgatgcagctggagttcggccgtggcttcacc
tacaacaggcctctcagagttaatctgctggacctggactttgagctggcagagcagctt
gacaacatcgcagagagggcgtgctgcaaggtcccctgcaagtgctcaggacagagaggg
gacagaggtgtgccaggccctataggaccaaagggtgtcacaggggatcttggctacgga
ggctaccctggtgatgaaggaggaccgggtgagcgtggacctccgggtgcgaatgggaca
caaggtttccagggatgccccgggcacagaggaacaaagggttctcggggattcccagga
gagaagggtgaactgggagaaatgggtctggatggcattgatggagaagagggagacaaa
ggtttgcctggctcctctggagagaagggatattctggcaggaggggagataagggagtc
aagggagaacgaggggaacgaggcgaccgcgggctccgtggagatccgggagattcagga
gctgataatactcaacggggccccagaggacaaaagggtgaaattggaccaatgggagat
cctggaccggcagggccggagggccaaaacggtgaagcagggaggaatggcatggcagga
cgaagggggcccataggaataaagggcaccaagggcgcgcctggccagccagggccagct
ggagaacaaggcatgcgagggccacagggtccccctggccagattggcacaccaggcatc
agaggagagcagggcatccctggacccagggctgggagtggacctccaggacccccagga
gaccgtggcaggattggtcctctgggaaggaagggtgagcctggagaccctggacccaaa
gggccaaacggacagccgggcccacgaggagagatgggtgatgatggacgcgatggaatt
ggtggcccaggtcctaaaggcaggaagggagaacgtggcttcgtaggttacgcagggcca
aagggtggacctggtgaccgtggtgttgctggaggccccggccccaaaggaaacagaggc
cgcagaggagatgcaggagtacctgggatacccggtcagaaaggagagattggataccct
gggccatctggccttaaaggcgagaaaggagaatccagagatcaatgtgcgctggtgcgg
aacatcaaagacaaatgcccttgctgctatggtcccaaggagtgccctgtcttcccaacc
gagctggcctttgctattgacacctcctcgggcgtcgtgagggaggttttcaacaggatg
aagcaaaccgtgctcagagtggtcaacaacttgaccatcgctgagagcaactgtccccga
ggggcacgggtggccctggtcacctacaacaacgaggtcaccaccgagatccgctttgct
gacgccaggaagaaatccagcctcctgcagcagatccaaaacttccaggcaacgctgacc
acgaagccgcgcagcctggagaccgccatgtccttcgtggccaggaacaccttcaagcgt
gcccgcagtggcttcctgatgaggaaggtggctgtcttcttcagcaatggggacaccagg
gcgtccccacagctcaacgatgctgtgctgaagctctacgatgccggggttgtgccggtg
ttcctcaccagcaggcaggatgcggtgcttgccagagctctggagatcaacaacacggcc
gtcggtcacgccattgttctcccaaccagcggcggtcagctgaatcaaaccattcagagg
cttttgacttgtcacatttgtttggatgtgtgcgacccagatcccagatgtgctggaact
ggccagagaccttccttccgagacagaagggcagcccccactgatgtggacacagacata
gccttcatcctggacagctccgagtccaccacccccctgcagttcagcgaaatgaaaaaa
tacatttcccacattgtaaccaacctggaaatcagctcagagccaaaagtatcccagcaa
cacgccagagtggctgttctccagcaagctccttacgaacacgaaatcaactcaagcttc
ccaccagtgaaaactgagttctcactaactgattatgcatccaaagagaagatcattaat
tacctccacaaccaaatgacccagctgcacggcacgagggctctaggaagtgcaattgag
cacacaatcactcatgtctttgaaagcgtgccaagccctcgggatctaaaagtcattgtt
ctgatgatgactggaaaagtgaacaaaagagaacttgagcacctgcagagggctgtcatc
agtgcaaaatgcaaagggtacttctttgttatcttgggcattggcaggaaggtgaatgcc
aagaacatctacagccttgccagcgagcccaatgatgtgttcttcaagctggttgataaa
ccaggagagctccatgaagagcccttgctgcgttttgggacactgctgccatccttcatc
agaagtgaatatgctttctacctgtctccagagataaggaaacagtgtgagtggctccag
aatggtcagcaaatccaaggccagcaccccgtgctcgttgggcagaaagcagtgttcgtg
gctcccaacgtgaccgccagccgcgccttccctgccagcaccacggtcagcgccaccatc
aagccagcagcgagtgcccacgccagaaccactcctgccagcaccacggcccaggctaga
gccccccagaccaccccagccacctctgtggcccaggggaatgccacagcccagggaaca
gccagtgccaccacgagccacagcaaagccagcggccgggctgccaccaccaccaacgcc
acaggcaccgcggccggcggcaggaggagacacagcgcaaagacccacgacatccagatc
acagatgtcaccgagagcagtgccaggctgcgctgggccagccctgagccccacagcacc
tttgatgtcactgtcaccttggcacaggaccattccctcgtgcagaggcaaaacctgact
ggcaccgagcacgtcatccgggggctccggagcgggcagaaatacgctgttgtcatcact
ggctcccaaaaatcccagcacaaagtaacctacacagggtcattcagcacgaagacccag
gcacagggccaggtgtccctggccaacatgatgctcaacactgagccactggaagggcct
gagagtgtgatggatgtctgccggctgcagaaggacgagggcacctgcaggaactttgtg
ctcaagtggtactacgaccccgagaccaagagctgcgcccgcttctggtacggcggctgc
ggcggcaacgacaacaggttcaacacgcagaaagaatgtgaaaaactctgcacccctggt
gccatcaaccccggcgcggtgacggcgatggggacatag
DBGET
integrated database retrieval system
