KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135450536
Entry
135450536         CDS       T09958                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510  Focal adhesion
zle04512  ECM-receptor interaction
zle04518  Integrin signaling
zle04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:zle00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135450536 (COL6A1)
   04518 Integrin signaling
    135450536 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135450536 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    135450536 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:zle04147]
    135450536 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:zle00536]
    135450536 (COL6A1)
Exosome [BR:zle04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   135450536 (COL6A1)
Glycosaminoglycan binding proteins [BR:zle00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135450536 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   135450536 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 VWA_3 vWA-TerF-like DUF5507
Other DBs
NCBI-GeneID: 135450536
NCBI-ProteinID: XP_064574890
LinkDB
Position
7:9575323..9598438
AA seq 1023 aa
MRLRDFLLTLLLLAGLLWGGSCAQRPEIITQVSSTEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR
VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGKKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDAGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNPGEPGPAGETGDEGALGED
GPPGERGSNGERGPPGSPGDRGPRGQPGEPGPPGDQGREGPLGPPGDQGEPGPSGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGTNG
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYICQEKKCPDYTCPITFTGPADITLLVDSSTSVG
SKNFETTKKFVKRLAGRFLEASKPTDDSVRISVVQYSGRNQQKVETQFQYNYTVIAKAID
NMEFMNDATDVNSALQFITEMYRRSARAAAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaggctgcgagactttctgctcactctgctgctcctggccggcctcctgtgggggggc
tcatgtgctcagcgcccagaaatcatcacccaggtctccagcacagaagactgccctgtc
gacctgttcttcgtcctggacacctcagaaagtgttgccctgagggtgaagccctttggg
gacctggttacccaagtgaaagatttcaccaaccggttcattgataaactcacccagagg
tactaccgctgcgaccgcaacctggtgtggaacgcgggagcgctgcactacagcgatgag
gtggtgctcatcaagagcctcacgccgatgcccagcgggcagagcgagctgaagaaccgc
gtgtcgtctgtcaactatatcgggaagggcacctacactgactgcgccatcaagcgcggc
atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctgatagtggtg
actgatggacatcccttggaaggctacaaggagccctgtggaggcctggatgacgctgcc
aatgaagcaaaactcctggggatcaaagttttctctgttgccatctcccccaaccacttg
gaccagcggctgaacatcattgccacggaccatgcctaccgccgcaatttcactgccacc
agcctgaagcccacccgggagatcgatgtggaggagaccatcaacaccatcattgacatg
attaaacttaacacagagcaatcgtgctgctcgttcgagtgccagcctccccgagggccc
cctggacctcctggtgaccctggccatgagggagaacgaggcaagccaggtcttcccggc
cagaaaggagaggctggagacccaggcagaccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcaggcgtggaatcgatggcattgatggcaagaagggtgaagcggga
taccctggattacctggctgcaaaggctctcctggatttgacggagctcaaggcccgcct
ggaccgaagggagatgctggtgcttttggacccaagggagcaaaaggagagcctgggaat
gatggaaagcctggccgacagggcattcctggcaaccctggagagaagggagctcctggg
aacccaggtgagcctggaccagctggagagactggtgatgagggtgctcttggtgaggat
ggtcctcctggagagcggggcagcaatggggagagaggacccccaggctcgccgggtgac
cgtgggccgagaggacagccgggagagccaggaccacctggtgaccaagggcgggaagga
cccctcggtccacctggcgaccagggtgagcctggaccttcaggacccaaaggctaccgg
ggagatgatggcccccccggcagtgagggtccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagaaaggggggaggatggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcactaacgga
acaaaaggctacgtcggacctaaaggtgacgaaggggaagctggtgaccctggaaatgat
aacctgacccctgggcccagtggcatcaaaggagcaaagggccacaggggacgtgaaggt
cccccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgtgagtgcacctgtggtcccgtcgacctcctgttt
gtgttggacagctcagagagcattggcctgcagaacttccagattgccaaggactttatc
atcaaagtcatcgaccgcctgagcaaggatgagcgggtcaagtttgaagctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacgcaggagctggtggccatgggggat
gccaacatcgacaacatcggagcactcaagcaggcagtcaagaacctgcagtggattgct
gggggcacctacactggggaggccctgcagttcaccaaggacaacctgctgcggaggttc
acgtctgacaagcgcgtggccatcgtcatcacagacgggcgctccgacacgctgcgggac
cccaccccgctcaactccctgtgtgacgtcaccccggtggtttcccttgggattggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgctgagctcctggatgacaccttc
ttgcagaacatcacctcgtacatctgccaagagaaaaaatgtcctgactacacctgccca
atcaccttcactgggccagccgacatcacgctgctggtggacagctccaccagcgtgggg
agcaagaacttcgagaccaccaagaagtttgtgaagcggctggcagggcggtttctggag
gccagcaagcccaccgatgactccgtgcgcatctcggtggtgcagtacagcggccggaac
cagcagaaagtggaaactcagttccagtacaactacacagttattgccaaggccattgac
aacatggagttcatgaatgatgccacggacgtgaattctgctctgcagttcatcacagag
atgtaccggcgctctgcccgcgctgcggccaagaagagggtgctggtgttttctgacgga
cactcccaagggatcaccgccagggccattgagagggctgtgcaggacgcacagaaggct
gacattgagatctatgtgctggcagtgggaagccaagccaatgagcccaacattcgtgtc
ctggtcacagggaagagcgcagattacgatgtggtttatggtgagaggcaccttttccgt
gtgcctgattacacctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagata
gctgttgactga

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