Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454185
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Entry
135454185 CDS
T09958
Symbol
IFT140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
zle03037
]
135454185 (IFT140)
Cilium and associated proteins [BR:
zle03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
135454185 (IFT140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
TPR_GEMI5
TPR_IFT80_172
TPR_COPA_B
Beta-prop_HPS5
WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Clathrin
Rax2
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
135454185
NCBI-ProteinID:
XP_064582162
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Position
14:304460..388339
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AA seq
1453 aa
AA seq
DB search
MAVYVDHRTDAPDSVASPSHIAWHPLHPLLAVASISTAGGGCVDIYLEQGEHVPDCHAER
SFQVTLLAWHPSRPILASGWETGGVLILNKQDKEQHTVPPNHSVKITVLSWSTSGTCLVS
GDGHGVLCLWKMDHRGRVQGPALVKQEYGKCLWHCVFWPPPPSEDFVQLAKAAVSGDEKA
LDMFNWKKAGIGPPLKTAVQEGLSFFITLADGSVHYVNEKGKTRQILSTDSLVRKLLLLE
ERDVLLVITETLQLSLHAVSPEGEAEELMKVKLSGKTAHSADMILVDHSLVVTALGETVI
RFWDLDQDENYVLSLDVQFGFEGGECINCVSYCSAKGILAAGTSKGRVAMWKKAAGSCQS
TRASEGKEKWKFQASTELEGNVTQIKWGSRKNLLAVNNISSVVILSEQAMLAHFHQQVAV
VQVSPNLFNVTIFSTGTTHSLRVDMNASGVFATQDVVVFWNGKQVAVFECSGDTFRSAGS
FLCDSPVLCVHGENLYTVEPYRIQVRTWQGTVKQLLVFSEAEGNPCLLDVCGNFLAVGTD
LAHLKIFDLSRREAKVHCNSKSLSKLLPGHGDILSVKCNANGSKVSILVSRVDGNIDSKI
CFFDVEMDQVTLFDFKAERGDGRESLSAGQSIGKFVVEYPELHSHIPACHFWDQSEPRLF
VCEVIPETGLQPPDQKKIQAEGTMDVWIISFFSTEEHGLLLQDSFALPSSYQLLLGIEVP
HYYFAKKLGEAEKGASESGSGTVSQMAARRPMRDFTGLGDCDKTTQDAMLNFSYYLTAGD
MDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGHMGHARGAKALREAEQEPEQKA
RVAVLAIQLGMLEDAERLYKDCRRYDLLNKFYQASNQWQKAIETAEAHDRVHLRTTHYNY
AKHLEATGQQSLALTHYEKSDTHRFEVPRMLSEDLQALENYINKMKDKSLWKWWAQYLES
QSDMESALKYYALAQDYFSLVRVHCFQGNIEKAAEIANETGNGAASYHLARQYESQEDIK
QAVHFYSRAQAFNNAIRLCKANNLNDQLMNLALLSSPEDMIEAACYYEEKGDQMDRAVML
YHKAGHFSKALELAFATQQFGALQLIAEDLDEKSDPALLARCSGFFIEHAQYEKAMELLL
TAKKYHEALQLCLEQNLTITEELAEKMTVSKESQDLSEESRRELLEQIADCCMRQGNYHI
ATKKYTQAGNKLKAMRALLKSGDTEKIIFFAGVSRQREIYIMAANYLQSLDWRKDAKIIA
NIISFYTKGGALDLLAGFYDACAQVEIDEYQNYEKAHRALAEAYKCLSKAKVRSPVEQES
RLGQLQSRMSLMKRFIHAQRVYPEDPEEAVRQCELLLAEQDFDSAVRHGDVLGFLVQHYA
QVEEFHTAYRYLEEMQRRIPASNLSYYVSPQTMEAVHRGAGVPMSQAQATAHSGHGSMDN
REEEEVADEVEEP
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtacgtggatcatcgaacagatgctcctgattctgttgcctccccttcccat
atagcatggcacccacttcatccactcctggcagttgcttccatcagcacagcaggtggg
ggctgtgtggatatctacctggaacagggagaacatgtgcctgattgccatgctgagaga
agctttcaggtcacattacttgcctggcacccttccagacccattctggcatcaggatgg
gagacaggaggagttctgatactgaacaaacaagacaaggagcagcacactgtaccccca
aatcacagcgtcaaaatcacagtcctgagctggagtacaagtggtacctgccttgtgtct
ggggatgggcacggtgtcttgtgtctgtggaaaatggaccatcggggcagagtgcagggt
cctgccctggttaagcaggagtatgggaaatgcttgtggcactgtgtcttttggccaccc
cctcctagtgaggactttgtacagctggcaaaagcagctgtgagtggtgatgagaaagcc
ttggatatgtttaactggaagaaagctggaataggaccacctctgaaaacagcagtccag
gaaggactctccttctttatcactttggcagatggttctgtgcactatgtgaatgagaaa
gggaagacaaggcagatattgtctacggacagtctggtccgaaagctcctgttgctagag
gaaagagatgttttacttgtaataacagagactctgcagttgtctttacatgcagtttct
cccgagggagaagcagaagagctcatgaaggtgaagttgagtgggaagactgcccattct
gcagacatgattctagtagaccatagcctggttgttacagcactaggtgagacagtcatc
aggttctgggatttggatcaagacgagaactatgtgctctccctagatgtgcaatttggc
tttgaggggggagaatgtattaactgtgtctcttactgcagtgctaaaggtatcttggca
gctggaactagcaaggggagagtagcaatgtggaagaaagcagcaggatcttgtcagagc
acacgggcttctgaaggcaaggagaagtggaagttccaagcatctacagaacttgaagga
aatgtcactcagataaagtgggggtcccgaaaaaacctgctggcagtgaacaacatcagc
tctgtggtgatcctcagtgagcaggccatgttggcacactttcatcagcaggtggccgtg
gtacaggtgtctcccaacctcttcaatgtcacgatcttcagcacaggaaccactcacagc
cttcgtgttgacatgaatgctagtggagtctttgctactcaggatgttgtagtattctgg
aatgggaagcaagtggctgtctttgagtgctcaggagataccttcagaagtgcaggctct
ttcctttgtgactctcctgttctgtgtgttcatggagaaaatctgtacacagtggagcca
tatcggatccaggtccgcacctggcagggcacagttaaacagctgctcgtgttctctgag
gcagaggggaatccgtgcctcctggatgtctgtgggaatttcctggctgtgggaactgat
ctggctcacttgaaaatctttgatctctcacgcagagaggcaaaagtgcactgcaacagc
aagagtttatccaagctgcttcctggccatggagacattttgtctgtgaagtgcaatgct
aatggcagcaaagtcagcatccttgtcagcagggtggatgggaacattgattccaagatc
tgtttctttgatgttgaaatggaccaagttacgctctttgatttcaaggctgaacgggga
gatggtagagagagcctttctgctggacaaagcattggcaagtttgtagtggagtatcca
gagttgcacagtcacatccctgcttgccatttctgggaccagagtgaaccaagacttttt
gtatgtgaagtaattcctgaaacaggcctccaacctccagaccaaaagaaaatccaggct
gagggcacaatggatgtttggattatatcattcttcagcactgaagagcatggcctcttg
ctgcaggacagctttgcattgccttcatcctaccagcttcttcttggcatagaggtgcca
cattattacttcgcaaaaaagctgggagaagctgagaagggagcatcagagtctggctca
ggaacagtctctcagatggctgcaagaagacccatgagagatttcactgggctgggagac
tgtgataagaccacccaggatgccatgctgaacttcagctactatctcactgctggagac
atggacgaggccttcaaatccatcaagctgataaaaagtgaggctgtctgggagaacatg
gctcgcatgtgtgtgaagactcagaggctcgatgttgccaaagtttgcctggggcacatg
ggtcatgccagaggagccaaggcactgcgggaggctgagcaagagccagagcagaaggcc
agggtggctgtgctggccatccagctgggcatgctggaggacgcagagcggctgtacaag
gattgcagacgctatgacctcttgaacaagttctaccaggcctccaaccagtggcagaaa
gccatcgagacggccgaggctcacgaccgggttcacctgcgcaccacccactacaactac
gccaagcacctggaggcaaccgggcagcagagcctggcactcacccactatgaaaagtca
gacacacacaggtttgaggtacctcgaatgctctctgaagacttacaagcactggagaac
tacatcaacaagatgaaagacaagagcctgtggaagtggtgggcacagtacttggagagc
cagtcagacatggagtccgcattaaaatactatgcactggctcaggattatttttcccta
gtccgtgttcactgctttcaaggcaacattgagaaggctgctgaaatagccaatgaaacg
gggaatggggcagcctcctatcacctggcacgccagtacgagagtcaggaggacatcaag
caggccgtgcacttctacagccgggcccaggcgttcaacaacgccatccgcttgtgcaag
gcgaataatttaaatgatcagctgatgaacctggctctcctgagctcaccagaagatatg
atagaggcagcctgctattatgaggaaaagggggatcaaatggacagagctgttatgtta
taccacaaggcaggacacttctccaaagccctggagctggccttcgccacacagcagttc
ggggccctgcagctcattgctgaggacctggatgagaaatccgacccagccctgctcgcc
cgctgctccggcttcttcattgaacatgctcagtatgagaaggcaatggagctgctgctc
acagccaagaagtaccacgaagctctgcagctctgcctggagcagaacctaaccatcacc
gaggagctggctgagaagatgacagtctccaaggaatcccaggatctctctgaggagtcc
cggagagagctgctggagcaaattgctgactgctgcatgagacaaggcaactaccacatt
gccaccaagaaatacacacaagcaggaaacaagttaaaggctatgagggcattactgaaa
tctggagatactgagaaaattatcttctttgcgggagtttccagacagagagaaatttat
atcatggcagccaactacctgcagtcactggattggcgcaaggacgcaaagattattgcg
aatatcatcagcttctacaccaaaggaggggcccttgacctcctggcaggtttctatgat
gcatgtgctcaggtagaaatcgatgagtatcagaactatgaaaaagcacacagagcactg
gcagaagcatacaagtgcctttccaaagcaaaggtcagaagccctgtggaacaagaaagc
agacttggtcaactgcagagcaggatgagtctgatgaagcggttcatccatgctcagaga
gtttaccctgaagaccctgaagaagcagtcaggcagtgtgagctgctcctggctgaacag
gactttgacagtgccgtccggcatggcgacgtcctgggatttttggttcagcattatgca
caagtggaggaattccatacagcttatcgctacctggaagagatgcagagaagaattcca
gcctcaaacctgagctactatgtgtccccacagaccatggaggctgtgcaccgaggagct
ggtgttcccatgagccaagcccaggccacagcacactctggccatggcagcatggacaac
agggaggaggaagaagtggctgatgaagtggaggagccctga
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integrated database retrieval system
