Zonotrichia leucophrys gambelii (white-crowned sparrow): 135459344
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Entry
135459344 CDS
T09958
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135459344 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135459344 (SKIC3)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
135459344 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_14
TPR_16
TPR_8
TPR_12
TPR_11
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
ARM_TT21_C
TPR_6
TPR_15
BTAD
Fis1_TPR_C
TPR_5
TPR_20
TolB_N
TPR_30
FlbT
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
135459344
NCBI-ProteinID:
XP_064591323
LinkDB
All DBs
Position
Z:complement(21893044..21943965)
Genome browser
AA seq
1575 aa
AA seq
DB search
MICPLYLAATMSNKEVKAALKSARDAIRNKQYKEALKHCKAVLKQEKNNYNAWVFIGLAA
AELEQPDQAKGAYKKAIELEPNQLLAWQGLANLYEKPNQTDVKGDLADVYQKLLELHESG
DKQKWCDICNKLVELYHQEKKYLEVAETWQKLIRMKQEEGAEKTELHQLWKKMIQLLKDS
TRNQDNKTGQLLLTAFEHALHSADTVPGEDHQNLYKDFIQCLSKFPHEVTRLEKACDDMM
ALYPSMTYPLEVLCLHFVQSGTLPEKALHCFSKLLEMDASSGPGIIGFGIKCLKENKYKE
AVKSLTEGLQKTKQCPAAWYYLAEAQMKIHEHRNAVLSCNEALEALGTPEGPNLQWKNLV
FQLKAETLIKIADADAAEEAIKALEQIVDGTSDPVISALRGQAYLNKGLMDQASKVSQDL
LLSHPDLAEAHALEGFIHYSQKNYEQAEKSFLHAIERKAGIAEYHQYLGLTYWFMSDETR
KDKGKALTQFLKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGT
AAVNLSVELGDMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALR
ADPKDSNCWESLGEAYFNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAI
ATYQQILKKTENYVPALKGLGECYLMLARSALDNYFDRKAVDYIEQALAYFTRAVKHRPD
VSCLWKLLGDTCTSVHVISPAKVNVQVLGSLLSKNATKQVLTKNELLILGGRCYGRALKL
MSLPSIWCDLGINYYRQAEHLTAVGTDMNEISELLEKSLQCLKKAVRLDSKNHLYWNALG
VVASCSAIGNYALAQHSFIKSVQAEQINVVAWTNLGVLYLATGHIEQAHEAFKVAQSLEP
SYLLCWIGQALIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDEANRNTELY
LYNIVQMNAIPAAQVVLSKYTERNPDDASAFTMFGFLNEYLDLKQQAAYAYERAASLLKS
SEDTEKYNTAMQNYGRSLCALGRCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIK
AYEKALSVAESEKDKAHILTALAIIEYKLNRVDAAKTLLFKCSLKEPSTESLKALCTLGL
VKQDATLATAALKELLKHEKGNDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNP
ALWSLLSRLVPLYASKKPKGGAVAGSVAHTLDVNCGKEVLLNIAVNQLVAGCHMLEDKKN
NPLKNIQKAIHVCPDNPVAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKSKL
SGESHLPHNYVRTLEDWCLCQAITSLGETGKLSEAEALCNKGLKSCPEHPALFLLLRQIQ
CKQLLQSHKELPDNILEELRKTVMSSSSSAAAWQWLAKVYQSQRMMTGAEMCYRKSLQLA
SQQGSWNGKLSSLLRLAMLALEICMANVSNEHWPSLVQEATTEALKLSPSPLAVLLQALL
QYNRKMGARETRRMLERIVYQPANPETIVSVARWYLLQHLYAKDDCELIDVLIENAKANG
DVRALELNEKLSSSA
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgatatgtcctttgtatttagcagccacgatgtcaaataaggaggtgaaggcagcgttg
aagagtgctagagatgcaataagaaataaacagtacaaggaggccttaaagcattgcaag
gcagtcttgaagcaagaaaaaaataactacaatgcttgggtattcattggcctggcagct
gctgagttagagcagcctgatcaggccaaaggagcatacaagaaggctattgaacttgaa
ccaaaccagttactggcatggcaggggttagcaaatttgtatgagaaacccaaccaaaca
gatgtcaaaggagacttagcagatgtgtaccaaaaactcttggaacttcatgaaagtggt
gacaagcagaaatggtgtgatatatgtaacaagcttgtggaactataccatcaagaaaag
aaatatttagaggtggctgaaacttggcagaaactaataaggatgaagcaggaggaaggt
gcagaaaagacagagcttcatcagctttggaagaagatgatccagttactgaaagacagt
acaaggaaccaggataataagactgggcagttgcttttgactgcatttgaacacgcactg
cattctgctgacactgttcctggtgaagaccaccaaaatctttacaaagacttcatacag
tgcttgtctaaatttcctcatgaagtcactaggttggaaaaggcttgtgatgatatgatg
gctttgtacccttctatgacttaccctttggaagtactttgcttgcactttgttcagtca
ggtactttgccggaaaaggccctgcactgtttctctaaacttttggagatggatgcaagc
agtggtccaggcatcattggttttggtataaaatgcctcaaagaaaataaatacaaggag
gctgttaagagtcttactgaaggtttgcagaagactaagcagtgtccagctgcatggtat
tatctagcagaggcacagatgaagatccatgaacacaggaatgctgtcctgtcctgcaat
gaagctcttgaggctcttggaactcctgagggtcctaatcttcagtggaagaaccttgtc
tttcagttgaaagcagagactttgattaaaatagctgatgctgatgctgcagaagaagcc
attaaagcacttgagcagattgtagatggaaccagtgatccagtgatttcagctctcagg
ggtcaggcttatctgaacaaaggtttaatggatcaggcttcaaaggtttcacaagatctt
ctcttgtcccaccctgatctggctgaggcccatgctctagagggtttcatccattattcc
caaaagaactatgagcaggcagaaaaaagttttctacatgctattgaaagaaaggctgga
attgcagagtatcatcagtacctggggctcacatactggttcatgagtgatgagacaaga
aaagacaaaggaaaagcactcactcagttcttgaaggctgcaaaattggacagctacttg
ggaagtgccttttgttatctaggtaactactacagagacattgctggagacaaaagcaga
gctcgtggttgctataaaaaggcttttgaactggatgagacggatgaagaatctggaaca
gcggctgtcaatttaagtgtggaacttggagacatggacactgctttgtcaatcctgaat
gaggtaactgaaaaagcgagacctggtacagcaaaatgggcctggcttcatcgtggactt
tactacctgagaactggtcagccgtcacaagcagtggctgatttgcaggcagctctcagg
gctgatccaaaggattccaactgctgggagtctctaggggaggcttacttcaacagaggt
agctactcaacagctctgaaatccttcaggaaagcaagtgagctgaacccagggcttgtg
tacagcatttacagagctgcagcacttgagcagattctaggcaaatacgaaaatgctata
gctacctatcaacaaatattaaagaagacagaaaactatgtgcctgcactgaaaggactt
ggtgagtgttatctcatgctggcaagatcagcccttgataactatttcgataggaaggct
gtggattacatagagcaggcccttgcatattttacaagggcagtaaagcaccgtcctgat
gtatcttgcctctggaaactgttaggagatacctgtactagtgtacatgttatttcacca
gccaaagtgaatgttcaagtactaggatcccttctgagtaaaaatgcaaccaaacaggtg
ctgacgaaaaatgagcttctcatactgggaggaaggtgttatggcagagctttaaaactg
atgtctttgccgagcatatggtgtgatcttggaataaattattatcgccaagcagagcac
ctcacagcagtgggcactgacatgaatgagatcagtgaactgttagagaagtctttgcag
tgtctcaaaaaagctgtgagacttgacagcaaaaatcatctttattggaatgctcttggt
gtagttgcttcttgtagtgctattgggaattatgctcttgcacaacattcgttcatcaaa
tctgttcaagctgagcaaattaatgttgttgcctggaccaacttgggggttttatatctg
gcaactggacacattgagcaagctcatgaagccttcaaggtagcccagtctctggaacct
tcttacctcttgtgttggattggacaggctcttattgcagagactgtaggcagctatgat
accatggatctcttcaggcacacaactgaactcagtatgcatactgagggagcaaaaggc
tatgcccactgggtatgttcaacgctgcaggatgaagccaacagaaacactgaactgtat
ctgtataacattgttcaaatgaatgctataccagcagcccaagtggtcttgagcaaatat
acagaaagaaatccagatgatgcttctgctttcacaatgtttgggtttttgaatgagtat
ctggatctaaaacagcaggcagcctatgcctatgagagggcagcttcactgctgaaaagc
tcagaggatactgagaaatacaatacagcaatgcaaaactatggcaggtcactctgtgct
cttgggcggtgtgatgaggccattgaagtttacacatcaatacccctaacagagtttgat
ggcattgtggggctagcattagcttacttcaagaaaggactcttagaagaaagtatcaaa
gcctatgaaaaagcattgtctgttgctgagtctgaaaaagataaagcacatatcctgact
gccttggcaataatagaatataaactgaacagagtggatgctgcaaagacactactgttt
aaatgctcattaaaggaacctagtacggaaagtctgaaggctttgtgcacactgggactg
gtaaagcaggatgcaacacttgcaacagcagccctaaaagaattactgaagcatgaaaaa
gggaatgatgggatttatgagaggtgtctcattgcatctgctgtttatgcattacaaggt
agaaatgtggcaatccagagggaagtctccaaagcaatacacagttaccctgataatcct
gccctttggtctcttctgtctcgactagttccactgtatgcatcaaaaaagcctaaagga
ggagctgtggcaggaagtgttgcacatacacttgatgtaaactgtggaaaggaagtcctg
ctgaatatcgcagttaatcagttggtagcaggatgtcacatgttagaagataagaaaaac
aatcctctgaaaaatattcagaaggccatccatgtctgtccagataatcctgttgcttgg
gcagtgctaatggcagcctgtcatgctgaaaacactgttgtctgtctaaacaacactgaa
ccaaaacgaacaggcctagagatgacacttgtgtctacagtttcagccaaaagtaagcta
tctggagaaagtcatcttccacataattatgtccgtactcttgaagactggtgtctgtgt
caagctattaccagtctaggggagactggtaaactgtcagaagctgaagctctttgtaac
aagggtttaaaaagctgccctgagcacccagctctgtttttgcttttgagacaaattcag
tgtaagcagctgttgcagtctcacaaagaacttccagacaacatcctggaggaacttcgc
aagacagtcatgtccagttcatcctcagctgcagcctggcaatggctggcgaaagtatat
cagtctcagagaatgatgactggagcagagatgtgttacagaaagagtctgcagttggca
tcacagcagggcagctggaacggaaagttatccagtctgctcaggctagctatgctcgca
ctggaaatctgcatggctaatgtctcaaatgaacactggccatccttggttcaggaggca
acgactgaagctttgaaactttcaccttcccctttggcagttctgcttcaagccctgcta
caatataatcgcaaaatgggagcaagggaaactcggcgaatgttggagagaattgtttac
caaccagccaatccagaaaccatagtgtcagtggcacgctggtacctcctgcaacatctg
tatgccaaagatgattgtgaattaatagatgtgcttatagaaaatgccaaagctaatgga
gatgttagagctctggaactaaatgagaaattatcatcaagtgcctag
DBGET
integrated database retrieval system
