Zea mays (maize): 100383837
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Entry
100383837 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100383837
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100383837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100383837
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100383837
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100383837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
COG4_m
Motif
Other DBs
NCBI-GeneID:
100383837
NCBI-ProteinID:
NP_001349390
UniProt:
A0A1D6JJP6
LinkDB
All DBs
Position
1:1483173..1523848
Genome browser
AA seq
2409 aa
AA seq
DB search
MIPVSADVAAELRLLFECATDSNFDSIRREICQLVDSGLDGCILVLRVCLNQVLLNAGEV
KNLQLQLQQRLLSDVFRYCLRKTCFTTSFCEVLTTIALTDDFLESLSNLLELSVAEKIGV
GLALSDSENSEIKQKGQWFSIAQIEELCMNPIQSVSNDQIHEIVVFLHQYDGLLKHLDTL
NNVVSLLKVTERPFFAPVTNGDFDRQPNLSRHLDMYLGSTNDDFESLLSEIGKEISMADI
VAELGYGCTVDNTRCKEILSIVEPLDDVAISKLLGAVVGTHSGLGDAHNRYATFVSAILN
SHTNDSSQLTKWNADVLVDSINELAPSTNWVRVMEYLDHEGFNIPDETGFYLLMSIYTRA
CKDPFPLHAVCGSLWKNREGQISFLKHAVSASPDKFTFAHSSRHLDLAGPSQGNHAWSCL
DLLEVLCQLAEVGYATSVRSMLEYPLGHCPELLLVGVSHVTTVYNLLQYEVLSCIFPALL
KDPTKHNVMNYLWHTNPYFTLRGFVDAHSDPDCLLRTVDVCHDLKILSSVLDSTPFAFSI
KLAAAALRKDYSHLEKWLTEKLSLYGKGFVEECVDFLKATMSNTDNVLEGMSQPQSIVKN
LYWESCCVFIKVLQSHSGQLLSDVILDEIKKLCALYESRKPSSVVRELTNSEGGSDDIEV
EANAYFQHMFSGQISVDSMIQMLGRFKESTNKREVSIFDCMISNLFEEYKFFPKYPDKQL
KIAAVLFGSLIKHQLVAHLALGIALRGVLDSLRKSVDSKMFMFGTTALEQFMDRVIEWPQ
YCNHILQISHLRGTHFEMVSAIERALAKISSSQNEPNVGNLLSAEQHVSSSSSMEGTEVS
ESSWLMGTIPSQLGRPLSSPLQHRQQGLLGERSKISMSTLNKNIVSSQPPLVSSSADLTI
PKTTATPSLLASPHQSTSVSTSLHTGFLRSRSTSGLPRQPSYTTGFGTALNIETLVAAAE
QRDTPIETPPPEVQDKILFMINNISISNMEAKAKEFNEVIQEKYYPWFAQYMVMKRASIE
PNFHDLYLKFFDKVNSKSLNKEILKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLGKF
TIGRNQALRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCQSSIAYRPPNPWTMGILS
LLAEIYNLPNLKMNLKFDIEVLFKNLTVDIKDVKPTSLLKDRLREVEGNPDFSNKDVTAS
QTPVVAEVPSGTIPSLTHMEQQPEINITSRAMSLPNILNQYAAPVRLPTNSTVEDDKVAL
MMPEQVPSLTQVSPAQTQSTSPSPFSVNQLMAAIPREEIRFKINPKLGSLGPQLQYSKIM
DLALDKANREIILPVIQRSVTIASRTTKELILKDYALESDNNTITRSAHLMVGTLAGSLA
HVTCKEPLRVALYSNLRNLIQNLMSGSETIEQLIHTLINDNLDLGCAIIEAVATRQAVEL
IDVEIAQPFSQQRKQREAGGPAYHDTFAYAQGPFARVPEALRPKPGHLSASQQRVYEDFV
HVWHPHSQNVGATGSGLSGGATVSSTLGVPRAYSPNSAPVSSINLSTIHMSGLTSITQPM
ELGSEEPVTGIAQFLSNPAQVGVSESSVLLGGTIGAASNDLPVSSTTVTTNEITAMVPPP
STSAADRLGSILPELLNTGDALERYQQVAQKLEALIANDGKDVEIQSVIMEVPDILRRCV
SRDEAALAVAQKVFKSLYDNTSNTTYVSWLLATLVAIRDVCKLVVKELTSWVIYSDEEKK
FNIDIIFGLIRSELLNIGEYNVHLAKLIDGGRNKVATEFAMSLVQALFAHDPVGFTEFQN
VLDALSKHTKRPGSPESLQQLIEIARNNVSTTTGFVAVKDEKVKLPKDKKVLATRANKEE
NTANEITLVDPNQVAVLFSEWCQMCNHVSASDAAYTRFVTQLQQDGLLKGDDISERFFRI
LTELAVTHSLVSEQIVAPGGSSQQSPQQPHISYFSIDSYAKLVVMVLKYSVEITPNKASI
LSKILSVTVRSIQKDAEEKKASFNPRPYFRLFINWLYDLTTTDGHHDSSNFQVLTAFANA
FHMLQPLRVPAWSFAWLELVSHRSFMPKLLMCNSQKGWPFFQRLLVALLKFMEPYLRNAE
LPEAMDLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRNVILSAFPRNMRLP
DPSTPNLKIDLLAEISIAPRIMSDVDGALKSKQLKTEVDEYLKRPEGSSFLSDLNQKLLL
PQNEASVAGTRYNVPLINSLVFYVGIQAVQQLQLNKANPSASVQQINHISPMDIFQIGTA
TDIFRSLITSLDTEGRYLLLNAIANQLRYPNSHTHYYSFITLYLFSEATQEITQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTHCAPEIEKLFESVARSCGAKVVDE
GISVQDGSH
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atgatccccgtcagtgccgatgtcgctgcggagctgcgcctcctgtttgaatgcgctacg
gactccaacttcgactccattcggcgcgagatctgccagttagttgacagtggcctggat
ggatgcattttggtgctccgagtatgtctgaatcaagtgttgctgaatgctggggaggtc
aagaacctccagttgcagttgcaacaaaggcttttatctgatgttttcagatattgtttg
cgcaagacatgcttcacaaccagtttttgtgaggtgctgacaacaatagccttgacggat
gattttcttgaaagtctgtcaaatctgctggaactctcagttgccgagaaaattggtgtt
gggcttgcgctctcagattctgagaactcagagataaagcagaaagggcaatggttttca
attgctcaaattgaagagctgtgcatgaatcctatccaatctgtatcaaatgatcaaatt
catgaaattgtcgtgtttctgcatcagtatgatggcctgttgaagcatctggacacttta
aataatgttgtatctctactaaaagtcacagagaggccgttttttgcacctgtcactaat
ggagattttgatagacaaccaaatctttcaagacatttggatatgtacttgggtagcaca
aatgatgattttgagtcacttctgtctgaaatcgggaaagaaataagcatggctgacatt
gtagctgagttgggttatggatgtactgttgacaacactcgctgtaaggaaatactttcc
attgttgagcctcttgatgatgtcgccatatctaagttgcttggggctgttgttggcact
catagtggtcttggagatgcccataacagatatgcaacatttgtatctgctattcttaat
agccacacgaacgactcatctcagctgactaaatggaacgcagatgttcttgtggattca
atcaatgaactcgccccaagtacaaactgggtgcgtgtaatggaatatcttgatcacgag
ggtttcaatatacctgatgaaacaggcttttacctattgatgtctatatacacgcgtgct
tgcaaggatccatttccacttcatgctgtttgtgggtcattgtggaaaaacagagaaggc
cagatatcgttcttgaagcatgcagtttctgcttcacctgataaatttacatttgctcat
tcgtccaggcacttggatttggcaggtcctagtcaaggcaatcatgcttggtcctgcctt
gaccttttagaagttttatgccaactagctgaagttgggtacgctacatctgtacgatca
atgcttgagtatccactgggacattgccctgaactcttacttgttggtgttagccatgtc
actaccgtgtataatctccttcagtatgaagtactgtcctgcatatttcctgctctactg
aaggatccaacaaagcacaatgttatgaattatctctggcatacaaacccatacttcacc
cttcgaggttttgttgatgctcatagtgatccagattgtttgctaagaactgttgatgtt
tgtcatgacttgaagattctgtcttctgtccttgattctactccatttgcattttctata
aaattggctgctgctgccttgaggaaagactatagtcatcttgagaaatggctgactgaa
aagttatctttatatggaaaaggtttcgttgaggaatgtgttgatttcctgaaagcaact
atgagcaacactgataatgtcttagagggcatgtcacaacctcaatctattgtcaaaaac
ttatattgggagtcttgttgtgtcttcataaaggttcttcaatctcactcggggcagctc
ttgtcagatgtaatactggatgaaataaagaaattgtgtgctctgtatgaatcgaggaaa
cctagctctgttgtgagagaacttactaattcagagggagggtcagatgacattgaagta
gaggctaatgcatattttcaacacatgttctctggacaaataagcgttgattccatgata
caaatgctcgggcgcttcaaagaatctacgaataagagggaggtatcaattttcgactgt
atgatctcaaatctttttgaagaatataaattcttccccaagtatcctgataagcagctt
aagatagcagctgttctgtttggatctcttattaaacatcaacttgtggctcacctcgcg
cttggaattgctctacgtggtgtcctcgactccttgcgcaaatctgttgattcaaagatg
tttatgtttggtacaacagcactggagcagtttatggatcgtgtcatagagtggccacaa
tactgtaatcacatattgcagatctcgcatcttcgcggaacacattttgaaatggtttct
gctattgagagagcccttgccaaaatatcatcaagtcaaaacgagccaaatgttggcaac
ctgctttctgcagagcaacatgtttctagttcatcatccatggaaggcacagaggtgtct
gaatcatcatggctgatgggtaccatcccaagtcaactaggaaggcctctttcttctcct
ttgcaacataggcagcagggtcttcttggggagaggtctaagatttctatgagtacactg
aacaagaacattgtatccagtcagccgccccttgtttcatcatctgctgatttgactatt
ccaaagacaactgctacaccgtcgttactagcttcacctcatcagtctaccagtgtgtca
acgagtttgcatactggatttctgcgttctcgaagtacctcaggattgcctaggcaacct
tcatatactactggatttgggactgctttaaatatagagacacttgttgctgccgcggaa
caaagagatacaccaattgagacacctccacctgaagttcaggacaagattctttttatg
atcaacaatatatccatctcaaatatggaagctaaggcaaaggaatttaatgaggtcata
caggaaaagtattatccttggtttgcacaatacatggtcatgaaaagggcaagcattgaa
ccaaatttccatgatctgtatctgaagttctttgataaagtaaactcaaaatccttgaac
aaggaaatactgaaagccacatatgagaactgcaaggtcttgttaagatcagaccttatc
aaatctagttccgaggagcgctccttgctaaaaaacctaggcagttggttgggaaagttc
accattggtaggaatcaggcactaagggctaaggagattgatccaaaatctcttatcgtg
gaggcatatgagaaaggattgatgattgcggtcataccattcacttcaaagatccttgaa
ccttgccagtcaagtatcgcatatcgacctccaaatccctggaccatgggaattctaagt
ctacttgctgaaatttataatcttccaaacctcaagatgaatctgaaatttgatattgag
gtgctatttaagaaccttactgttgacataaaggatgtgaaaccaacttccctgctcaaa
gatcgtctgcgcgaagtcgagggaaatccagatttttcaaataaagatgttactgcatct
caaacccctgtggttgcagaagtcccttcagggaccatcccttcactaactcatatggaa
caacaacctgagatcaatatcacatcccgagctatgagccttccaaatatacttaatcag
tatgctgctcctgtccgtctacctacaaacagcacggtagaagatgacaaagttgctctg
atgatgcctgagcaagtgccctcgttgacccaggtttcgccagcacaaacacaatcaaca
tcaccatctccattttctgttaaccagcttatggcggctattccacgtgaagagatacgt
ttcaaaataaatccaaagctcggctcccttggtccacaactgcaatatagcaaaattatg
gatttggctttggataaggctaacagggagataatactccctgttattcaaagaagtgtg
accatagcaagccgaactacaaaagaacttattctgaaggattatgcactggagtctgat
aacaatacgataactcgatccgcacatttgatggttggaacattagccggaagtctggca
catgttacttgcaaggaacctcttcgtgttgcactatattctaatcttcggaatctcatt
cagaaccttatgagcggcagtgaaactatcgagcaacttattcacacgctaatcaatgat
aacttggatcttggctgtgccatcattgaggctgtggcaacacgtcaggctgttgaattg
attgatgtagaaatagcacagccattttcacaacaaaggaaacaaagagaggctggtggt
cctgcatatcatgatacctttgcttatgctcaagggccgtttgctcgtgtacctgaagca
ctgcgtcctaaacctgggcatttatctgcttcccaacaaagagtgtatgaggatttcgtt
catgtgtggcatccccatagtcaaaatgttggcgctacaggttctggtctgtctggtggt
gctactgtctcgagcacacttggtgtgcctcgagcttacagcccaaattcagcaccagta
tcctccattaatttgtcaactattcatatgagtggactaacatctataactcagccaatg
gaactggggtctgaggaaccagttactggtattgcacaatttttgagtaatcctgcccaa
gttggagtaagcgagtcttctgtcctacttggtggaacgattggtgctgcatctaacgac
cttcctgtcagttcaacgactgtcacaaccaatgaaataactgctatggtgccacctcca
tcaacatctgctgcggatcgcctaggatctattttacctgaacttttgaatactggggat
gctttggagagataccaacaggttgcccaaaagctggaagccttgattgctaatgatggc
aaagatgtggaaattcagtctgttattatggaagttcctgatatcttgcgtaggtgtgtt
agccgtgatgaggctgcattagcagtagcacaaaaggttttcaagagtttgtacgataac
acatcaaataccacttatgtctcctggcttctagcaaccttagttgcaatacgagatgtc
tgcaagcttgttgtcaaagagttaacaagttgggtaatatattcagatgaagagaagaag
tttaacattgatatcatttttggccttattcgttcggagttgctgaatattggggagtac
aatgttcatttggcaaagttaattgatgggggaagaaataaggttgcaacggagtttgca
atgtcccttgtccaagcattgtttgctcatgatcctgttggcttcacagagtttcagaat
gttcttgatgcactatcgaagcatacaaagagaccaggttcacctgaatcgttgcaacaa
ttgattgaaatcgcaaggaataatgtgagcaccactactggttttgttgctgtgaaggat
gaaaaggtcaaactgccgaaggataaaaaggttttagctacccgggcaaacaaggaggaa
aacactgctaatgaaattacactagttgatccaaatcaggtggcagtcctgttttctgaa
tggtgtcagatgtgtaatcatgtaagtgctagtgatgcggcatacactcgttttgtcaca
cagttgcagcaagatggtctgctgaagggggatgatatctctgaacgcttcttccgtatt
ctcacggaacttgctgttacacactctctagtctccgagcagatcgttgctcctggtgga
tcatctcagcaatcaccacagcaacctcacatttcatatttctccattgattcatatgca
aagcttgtggttatggttctcaagtactcagtggagataacaccaaataaagccagtata
ctttccaagatcctatctgttacagtgaggtccattcagaaagatgctgaggaaaagaaa
gcttcatttaatcctcgaccatacttccgattgtttataaattggctctatgatcttact
actaccgatggtcaccatgatagttctaattttcaggttttgactgcatttgcaaatgca
ttccacatgctacaacccttgagagttcctgcctggagctttgcttggcttgagctggtg
agtcacaggagcttcatgccaaaactgctgatgtgcaattcacagaaaggttggccattt
tttcagcgactgcttgttgctcttctcaagttcatggaaccatatctgagaaatgctgaa
ctcccagaggcgatggaccttttatacaagggaactatgcgagttctgcttgtactactg
catgactttcctgaatttctttgtgattatcacttcagtttctgcgatgtgattccttca
agttgcattcaaatgcgcaatgtcattcttagtgcttttccacgtaacatgagactgcca
gacccttctacccctaatctaaagattgatttgttggctgaaatttcaatagcaccacga
atcatgtcggatgttgatggtgcccttaaatcaaagcagttgaagactgaggttgatgaa
tatctcaagaggccggaaggctcttcctttttaagtgacctgaaccaaaaattgctgctg
cctcagaatgaagcaagtgttgctgggacacgctacaacgtgcctctgatcaattcactt
gttttttatgttggcatccaagctgtgcaacaactgcaactgaacaaggctaatccgtct
gcatcagtacagcagattaaccatatatctccgatggacattttccagattggaacagct
accgatatattcaggagtcttataacaagtttggatacagagggccgctaccttctgttg
aatgcaatcgctaaccaactgcgctatccaaatagccatacacactactactccttcatc
actctgtatctattttccgaggctacccaggaaattacccaggagcaaatcacaagggtt
cttctggagcgtctcatagtgaaccgcccccatccttgggggttacttattactttcatt
gaattgataaagaatccgcgttacaacttttggagccggtcttttacacactgtgcacct
gagatagagaaactgttcgagtcggtggcaaggtcatgtggcgcaaaagttgtggacgaa
ggaatcagcgtgcaggatggcagccactaa
DBGET
integrated database retrieval system
