Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: ZCP4_0567
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Entry
ZCP4_0567 CDS
T02932
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
zmi
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ZCP4_0567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zmi03021
]
ZCP4_0567
03400 DNA repair and recombination proteins [BR:
zmi03400
]
ZCP4_0567
Enzymes [BR:
zmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ZCP4_0567
Transcription machinery [BR:
zmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ZCP4_0567
DNA repair and recombination proteins [BR:
zmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ZCP4_0567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHB09880
LinkDB
All DBs
Position
complement(644859..649064)
Genome browser
AA seq
1401 aa
AA seq
DB search
MGRLVVKREDYMATKASAIGHASVKKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSRP
EDGYVSGLEKTLRSVFPIRDFGGVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLR
LIVFEVDPDTETRSVLDIKEQDVYMGDMPLMTRNGTFFINGTERVIVSQMHRSPGVLFDH
DKGKTHSSGKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQ
ILHHFYNTITFVRGDGGWKVPYVAESWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKA
GRDGLETLLIPTEEIYGHYAAYDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLD
IDHVSTGPWIRNTLKADKAEDRDHALAEIYRVMRPGEPPTKETAEALFYGLFFDPERYDL
SAVGRVKLNMRLDLDCPDTVTTLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVG
ELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQ
TNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLAT
FSRINKYGFIETPYRKVVDHKVTNEVIYLSAMEESRYTVAQANAELDAEGHFVEELVSAR
EAGEFLMAPREQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEA
PFVGTGMEETVARDSGAAISARRAGIVDQVDASRIVIRTTGEIEAGKPGVDIYRLMKFQR
SNQSTCINQRPLVSVGDYVNAGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILI
SERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEDALRNLDEAGIVYIGAEVQ
PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHG
VDKDERAMAIEREEIERLTKDREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARI
DIETLASVEPHKWFKFAVEDDARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPP
GVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVP
SRMNIGQIFETHLGWAARGLGAKVRTALEEWREANADRYEWDFSPPEVVRERMIEVYGEK
YAEDIKSREDREIVEMAGLLRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGR
TGEQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMHSLGLN
VELKTSKAKDEDDSSFQVAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctggttgtgaagcgtgaggattatatggcgaccaaggcatctgctatcggc
cacgcgagtgtaaaaaaacgtattcgcaaaatgtttggtaatatccatgaagttgtggat
atgccgaaccttatcgaagttcagcgtgatagttacgaaaactttctgcgttctcgccct
gaggacggatatgtttcagggttggaaaaaactctgcgttctgtttttccgatccgtgat
ttcggcggtgtagcagaactggattttgtccagtatgagttggaagaaccaaagtttgac
gtcgatgaatgccgtcagcggggcattacctatgcggctccgatgcgggttaccttgcgt
ctgatcgtatttgaagttgatcctgacacggaaacgcgttctgttctcgatattaaagag
caggatgtctatatgggcgacatgccgctcatgacgcggaacggcaccttctttatcaat
ggtaccgagcgcgttatcgtcagccagatgcaccgtagtccgggtgttctgtttgaccat
gataaaggcaaaacccattcctccggtaaattcctgtttgccgcgcgcgttattccttat
cgtggttcatggttggatttcgaatttgacgcgaaagatatcgtcaatgttcgtatcgac
cgtaaacgcaaattaccggtcacgaccctgctttatgctttgggtttgaatgccgaacaa
atcctgcaccatttctataacacgatcacttttgtgcgtggtgatggcggctggaaagtg
ccttatgtcgctgaaagctggcgtgggcggaagccattctttgacatcatcaatggcgat
accggtgaggtcgttttccctgccggacagaagatttcgccccgcgctgccaataaggct
ggccgcgatggtttggaaaccttgctgattccgactgaagaaatctacggtcattatgcc
gcttatgatgttatcgacgaatcaacgggtcgcatctggattgaagcgggcgacgaagta
acgccagaaaatctggaattgctggataatgccggtgtcgcaacgcttgagttgttggat
atcgaccatgtttccaccggtccttggatccgtaacactttgaaagccgataaagctgaa
gatcgcgatcatgctttggctgaaatctatcgggtaatgcgtcctggtgagccgccaacg
aaggaaaccgcagaagcgcttttctatggcttgttctttgatccagaacgctatgacctt
tcggctgtcggtcgcgtcaagctgaatatgcgccttgatctcgattgtcctgatacggtt
acgaccttgcgagcagaagatattctggccgttgtgaaaacgctggtcgatctgaaagac
ggcaagggcgaagtcgatgatatcgataaccttggtaaccgtcgcgtccgttcagtcggt
gagctgttagaaaatcagtatcgtgttggtctgttgcggatggaacgcgctgttaaagag
cgtatgtcctctgttgacgtttcgaccgtcatgccaaatgatctgatcaacgccaaaccg
gcggtggctgcggttcgcgaattcttcggttcttcgcagctgtcccagtttatggatcag
accaatcccctttccgaagtcacgcataagcgtcgtgtttcggctttgggcccgggtggt
cttacccgtgagcgtgcaggctttgaagtccgagatgtccatccgacccattatggtcgt
atctgcccaattgaaacgcctgaaggcccgaatattggtctgattaactctcttgctacc
tttagccgtattaacaaatacggttttatcgaaacgccttatcgtaaggttgtcgatcac
aaggtaacaaatgaagttatctacctctctgcgatggaagaaagccgctatacggtggct
caggccaacgcagaattggacgcagaaggtcatttcgtcgaagaactggtttctgctcgt
gaagccggtgaatttttgatggcacctcgcgaacagatcactttgatggacgttagcccg
aaacagttggtttcggtcgctgcctccttgatcccgttccttgaaaacgatgacgctaac
cgcgctttgatgggttccaacatgcaacgtcaggccgtgcctttggtacgtgctgaagcg
ccgtttgttggcaccggtatggaagaaacggttgctcgcgattctggagccgcgatttcg
gcacgccgtgctggtattgtcgatcaggtcgatgcttctcgtattgttatccgcaccacg
ggtgaaatcgaagccggtaaacccggtgtcgatatttatcgcttgatgaaattccagcgt
tctaaccagtcaacctgcattaaccagcgtccgttggtcagcgtcggtgactatgtgaat
gccggtgacgttttggctgatggcccgtctacggaattgggtgaactggcattggggcgg
aacgtactcgtcgcctttatgccgtggaatggttacaactacgaagattccatcctgatt
tccgaacggattgttaaagacgacgtctttacctcgattcatattgatgaattcgaagtg
atggctcgtgataccaagctggggccggaagatatcacgcgtgatattccgaatgttggt
gaggatgctctccgcaatttggatgaagcgggtatcgtttatatcggtgcagaagttcag
ccgggcgatattttggtcggtaagatcacgccaaagggcgaaagcccgatgacgccggaa
gaaaagttgttgcgggcgatctttggtgaaaaagcctcggatgttcgtgatacctctttg
cgtctgcctccgggtgttgctgggacgattgttgatgttcgtgtctttaaccgtcatggt
gtcgacaaagacgaacgcgccatggctattgagcgcgaagaaatcgagcgtctgacgaaa
gaccgtgaagacgagcgggctattctgaatcgggcaacctatgctcagcttcaggaaaaa
ctgcttggtcagacggtagctgctgcgccttataagcatatcgttaagggtgccagaatc
gatatcgagacgctggcttctgtcgaaccgcataaatggttcaaattcgctgttgaagat
gatgcccgccaggcagaattggaagcgatcaagaaccagtatgacagtgcagatgaagct
attcggaagcgctttgaagatcgcgttgaaaaagcacagcgtggtgacgagttaccgcca
ggcgtcttgaaaatggtcaaggtctttgttgccgtgaagcgtaagcttcagccgggtgat
aagatggccggtcgtcatggtaacaagggtgttatcagtcgtattctgcctgccgaagac
atgccgttccttgctgatggaacgccggttgatatcgttctgaacccgttaggtgtgcct
agccgtatgaatatcggacagatattcgagacgcatttaggttgggctgcgcgtggtctt
ggggcgaaagtccggacagctttggaagaatggcgcgaagctaatgccgaccgctatgaa
tgggatttctcaccaccagaagttgtcagagaacggatgattgaagtctatggcgaaaaa
tatgccgaagacatcaaaagccgtgaagacagagaaatcgtcgaaatggcgggtctgtta
agaaatggtgtgccgatggcaacgccagtctttgatggtgccaagccggaagatatttct
gaaatgctgaatttggctggtctggatgactctggacaggttgaattatatgatggacgg
acgggtgaacaattcgaccggaaggtgactgtcggctatatttatatgctgaaattgcac
catttggttgatgacaaaatccatgctcgttccatcggcccctacagtcttgtcacccag
cagccgttgggcggtaaagcacagttcggtggtcagcgctttggtgaaatggaagtctgg
gcattgcaggcttatggtgctgcttataccttgcaggaaatgttgaccgttaagtcagat
gacgttgtcggtcgtaccaaggtttacgaagctatcgtcaagggtgatgatactttcgag
gccggtattcctgaaagcttcaacgtgcttgtcaaggaaatgcatagtctgggtctgaat
gtcgagctgaaaacctccaaggcaaaagacgaagacgatagcagttttcaggtagccgct
gaatag
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