Zobellella sp. DQSA1: ACEVBK_17955
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Entry
ACEVBK_17955 CDS
T11130
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
zob Zobellella sp. DQSA1
Pathway
zob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACEVBK_17955 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zob03021
]
ACEVBK_17955 (rpoB)
03400 DNA repair and recombination proteins [BR:
zob03400
]
ACEVBK_17955 (rpoB)
Enzymes [BR:
zob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEVBK_17955 (rpoB)
Transcription machinery [BR:
zob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEVBK_17955 (rpoB)
DNA repair and recombination proteins [BR:
zob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEVBK_17955 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
XGY37699
LinkDB
All DBs
Position
complement(3779199..3783227)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPQGEYGLEAAFRSVFPIT
SYSGTAELQYVSFRLGEPVFDVQECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALDFTTEDMLATFFDTTKFEVADGKLMME
LKPERLRGDTASFDIVVDGETVVETGRRITARHIRQLEKAGVEQIEVPVEYAVGKVSAKD
YINADTGEVIVAANSELSLENLANLSVAGFKQFETLFTNELDHGAYMSETLRIDSATTRL
EALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSTVGRMKFNRRLFREELNGPGTL
TKSDIVDVMKQLIAIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLACYSRTNEYGFLETPYRKVIDGKIT
DEVDYLSAIEEGHFVIAQANAATDEEGRLLDELVPSRHKGEATYMNADQVQYMDVSPQQI
VSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIERAVAVDSGVTVVAKR
GGVVDYVDASRIVVKVNDEEMLPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGERVLGG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILLSERLVQEDRLTTIHIQELSCIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKPGDILVGKVTPKGESQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVYGTVIDVQVFTRDGVEKDKRAQDIEHMQLKQAKKDL
TEEFSILEEGIFARARSVLIAAGLSADKVDKIARAKLLEQAVDDEGKQIELEQIAEQYAE
LKADFDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PIEDMPHDEYGTPVDIVLNPLGVPSRMNIGQILETHMGLAAKGIGEKIDRMIKEQQELAR
LREFIQEVYNLGDGVRQKVDLSTFSDAEVKVLAENLRKGMPIATPAFDGAREHEIKRLLK
LADLPESGQITLYDGRTGNTFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEES
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttacacagagaaaaaacgcattcgtaaggacttcggtaagcgtgaccag
gtcttggacacgccttacctgctgtcaatccagcttgactccttcaaacagtttattgaa
gcagatcctcaaggcgagtacggtctggaagcggctttccgcagcgttttccctatcact
agctattctggcactgccgaactgcagtatgtcagtttccgcttgggtgagcccgtgttt
gacgtgcaagaatgtcaaatccgtggcgtgacctactcggcgccgttgcgcgtcaagttg
cgtatggtcctgtacgacagagaagcggctgcaggcactgtcaaggacatcaaagagcaa
gaagtctacatgggcgaaatcccgctcatgactgaaaatggtaccttcgtgatcaacggt
accgagcgggtaatcgtctcccagctgcatcgcagcccgggtgtgtttttcgatcacgat
cgcggcaagacccactcctccggtaaggtcctgtataacgcccgcgtgatcccctaccgt
ggttcctggctcgattttgagttcgatcccaaagacaacctctttgtgcgtatcgaccgt
cgtcgtaagctgccggcgtccattatcctgcgtgccctcgacttcactaccgaagacatg
ctcgccaccttcttcgacaccaccaagttcgaagtggccgatggcaagctgatgatggaa
ctcaagcccgagcgcctgcgtggtgacaccgcctctttcgacatcgtggtcgatggcgaa
accgtggtggaaaccggtcgtcgcattaccgcccgccatatccgtcaactggagaaggcc
ggcgtagaacaaattgaagtgccggtggaatatgccgtcggcaaggtatcggccaaggat
tacatcaacgccgataccggcgaagtgatcgtcgccgccaacagcgaactgagcctggaa
aatctggccaatctgtctgtggccggtttcaagcagttcgagaccctgttcaccaacgag
ctggatcacggcgcctacatgtccgagaccctgcgtatcgattctgccactacccgcctc
gaggcgttggtggaaatctatcgcatgatgcgtcccggcgagccgcccacccgtgaagca
gccgaaaccctgttcgagaacctgttcttctccgaagatcgctacgatctgtccaccgtg
ggtcggatgaagttcaaccgccgcctgttccgcgaggaactgaacggtccgggtaccctg
accaagtccgatatcgtcgacgtgatgaagcagttgatcgccatccgtaacggtaacgac
gaggtggacgatatcgaccacctgggtaaccgccgtatccgttccgtcggtgaaatggcc
gagaaccagttccgcgtgggcctggtacgggtcgaacgggcggtgaaagagcgtctgtcc
ctgggcgacctcgacaccctgatgccccaggacctgatcaacgccaagccgatttccgcc
gcggtgaaggagttctttggctccagccagctgtcccagttcatggaccagaacaacccg
ctgtcggaagtgactcacaagcgccgtatctcggccctgggcccgggcggtctgacccgt
gagcgtgccggcttcgaagtccgtgacgtacacccgacccactatggtcgcctgtgtccc
atcgagacgcctgaaggtccgaacatcggtctgatcaactccctggcctgctattcccgc
accaacgagtacggtttcctcgagaccccgtaccgcaaggtgatcgacggcaagatcacc
gacgaggtggactacctgtccgccatcgaggaaggtcatttcgtgatcgcccaggccaat
gccgccaccgatgaagaaggccgtctgctggacgaactggtaccgtcccgtcacaagggc
gaagccacctacatgaatgccgatcaggtccagtacatggacgtgagcccgcagcagatc
gtctcggttgccgcctcgctgatccccttcctcgagcacgatgacgccaaccgggccctg
atgggttcgaacatgcaacgtcaggcggtgccgaccctgaaggcggacaagccgctggtg
gggaccggtatcgagcgtgccgtggcggtggactccggcgtgaccgtggttgccaagcgg
ggtggtgtggtcgactacgtcgacgcttcccgcatcgtggtcaaggtcaacgatgaagag
atgctgccgggcgaagccggtatcgacatctacaacctgaccaagtacacccgttccaac
cagaacacctgtatcaaccagcgtccctgcgtgatgccgggcgagcgggtcctgggcggt
gacgtgctggccgacggcccgtccaccgatctgggtgaactggcgctgggccagaacctg
cgcgtggccttcatgccctggaacggttacaacttcgaagactccatcctgctgagtgag
cggctggtacaggaagatcgcctgaccaccatccacattcaggagctgtcctgtatctcc
cgtgacaccaagctgggcccggaagagatcaccgccgacatccccaacgtgggtgaagcg
gcgctgagcaagctggatgagtccggtatcgtctacgtgggggcggaagtgaagcccggc
gacatcctggtcggtaaggtcacccccaaaggtgaaagccaactgaccccggaagagaag
ctgctgcgtgccatcttcggtgagaaggcttccgacgtgaaggattcttccctgcgggta
ccgaactccgtgtacggtaccgtgatcgacgtgcaggtctttacccgcgatggcgtggag
aaagacaagcgtgcccaggacatcgagcacatgcagctcaagcaggccaagaaggatctg
accgaagagttcagcatcctggaagaaggcatctttgcccgggcccgttccgtgctgatc
gccgccggtctgagtgccgacaaggtcgacaagattgcccgtgccaagctgctggagcag
gcggtggacgacgaaggcaagcagatcgagctggagcagatcgccgagcagtacgccgag
ctgaaggccgacttcgacaagaagttcgaaaacaagcgtcgcaagatcacccagggtgat
gatctggctcccggtgtactgaagatcgtcaaggtctatctggcagtgaagcgtcgtatc
cagcctggtgacaagatggccggtcgtcacggtaacaagggtgttatctccaccattgtc
cccatcgaagacatgccccatgacgaatacggcaccccggtcgatatcgtgctcaacccg
ctgggcgtaccctcgcggatgaacatcggtcagatccttgaaacccatatgggccttgct
gccaagggcatcggcgagaagatcgaccgcatgatcaaggagcaacaggaactggcccgt
ctgcgtgaattcatccaggaagtttacaacctgggtgacggcgtgcggcagaaagtggac
ctgtccaccttctccgatgcggaagtcaaggtgctggccgaaaacctgcgcaaagggatg
ccgattgccacgccggcgtttgacggtgcccgcgagcacgagatcaagcgcctgctgaag
ttggcggatctgcccgagtcgggccagatcaccctgtatgacggtcgtaccggtaacacc
ttcgagcgtccggtcaccgtgggttacatgtacatgctgaagttgaaccacttggtggac
gacaagatgcatgcccgttctaccggttcctacagtctggttacccagcagccgctgggc
ggtaaagcccagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagct
tacggcgccgcctataccctgcaggaaatgctgaccgtcaagtcggacgatgtgaacggc
cggaccaagatgtacaagaacatcgtggacggcgatcaccgcatggagccgggcatgccc
gagtccttcaacgtactgttgaaggaaatccgctccctcggtatcaacatcgagctggaa
gaaagttaa
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