Zingiber officinale (ginger): 121969917
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Entry
121969917 CDS
T08725
Name
(RefSeq) UV-stimulated scaffold protein A homolog isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121969917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121969917
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
121969917
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
Motif
Other DBs
NCBI-GeneID:
121969917
NCBI-ProteinID:
XP_042376170
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All DBs
Position
4A:54433066..54436090
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AA seq
662 aa
AA seq
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MKLTPSRMRAEEQKMGEETAPAVLRLIEKATNSTAHEVDPRLLRAISLTIRYSDDEVRAA
VQFLMFQMRKSHSQVRYLAVLIIDELFMRSKLFRSLLVIHFDQFLILSVGFRRNMALPPP
LSIATNLRKMSIELLEKWNASFGIYYRQLRLGFDYLKNTLRYQFPNRIANAAHLQQERRE
REIRTQQILLNKFEHLKENFPSIKSEIQSTIDEAEECLEIFNEKEEFYPHKFIEEEELEE
FQSLALRKIRLESLKEGQKVQENSDNKAIFDALRELFKLLVLKHLTSIREWISVLIRVEL
SDNRFRETALKELIDIQKHIHSVRNRCVQLGCVLNDPSNEEEEDFWEEGKIEDCTLEKSS
RYKSLVQSPVDAPTMGKDKNAKPLGENNLFASSGSSSPRSRLLAEAPVLTWGPFLDNWGS
RRDVLANQRGLELESHWGRVDFDAIIPAEKIAELSVYRTVYEEEQVEIQPCLAPLRKGGL
CQRRDLRMCPFHGPIIPRDSNGNPLGESLSNKGKPEKNSSITTNGESDGMCVEESLKLSN
VSVEQLAKQAVKNARERERNDKLLKRAKHAKVREHNDMVLREAAIASTSYSGASGEYREA
LQENQNEPKKKKPTLSSMLKKKVTPKDRINQRLLNTRVTDSAIRQVMQGEDLNYRQAFPN
QW
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgaccccctcaaggatgcgagcggaagagcagaagatgggggaagaaacggcg
ccagcggtgctgaggcttatcgagaaggccaccaactcgacggcgcatgaggtcgatcct
cgcctcctcagagccatcagtttaaccatccgctattccgatgacgaggtccgcgccgcc
gtccaatttctcatgttccagatgcgaaaatcccactcacaggtgcggtacctggctgtt
cttatcattgatgaactcttcatgcgttcaaagctttttagatcccttctagtgattcac
ttcgaccagttcttgatcttaagtgttggtttcaggagaaatatggctcttcctcctcct
ttgtccattgcaactaatttgcgtaaaatgagcatagagctactagaaaaatggaatgca
tcctttggaatttactacagacaactgagattaggttttgattatctaaagaacactctc
agataccaattccctaatcggatagcaaatgcagctcatttgcaacaagagagaagagaa
agagaaataagaacacagcagattttactcaataagtttgagcatctaaaggaaaacttc
ccgtctatcaagagtgagatccaatcaacaattgatgaagctgaagagtgtttagaaatt
tttaatgaaaaagaagaattttatccacacaagtttattgaggaagaagagttggaagaa
tttcaatcacttgcactaaggaaaattcgtttagaatcactgaaggagggtcaaaaggtt
caagagaatagtgataacaaagccatctttgatgcactaagagagttgttcaaacttcta
gtcttgaaacatttgacatcgatacgagagtggatatcagtacttatcagagtggagctc
agtgacaacagattcagggaaactgcattgaaggaattgattgacatccaaaagcatatc
cattctgttagaaatagatgtgttcaattagggtgtgttctcaatgacccttccaatgag
gaagaggaagacttttgggaagagggtaaaatagaagattgcacattggagaagtcgagc
aggtacaaaagcttagttcagagtcctgtggatgctccaactatgggaaaagacaagaat
gcaaagccattaggtgaaaataacttatttgctagttctggttcatcatctccaaggtca
agacttttggctgaagcaccagtgttgacttggggtccattcttggataattggggctca
agaagagatgttttggcaaaccagagggggcttgaactagagagccattggggtagagtg
gattttgatgccattattcctgctgagaagattgcagagctgagcgtttatcgtactgtc
tatgaagaagagcaggtagaaatccaaccatgccttgctcctttaagaaaaggtgggctt
tgtcaaagaagggacttgagaatgtgcccgttccatggacctattattccacgtgattct
aatggaaatcctttaggtgaaagtctatctaataaagggaaacctgaaaaaaattcttcc
atcactacaaatggagaaagtgatggcatgtgtgtagaagaatctctcaagctgagcaac
gtatcagttgagcaattggcaaaacaagcagtcaagaatgccagggaaagagagagaaat
gacaagctgttgaagagggcaaaacatgcaaaagttcgtgagcataatgacatggtcttg
agagaagcagcaattgcttccacatcatactcaggagcttctggagaatatagagaagcc
ttacaagaaaaccaaaatgaaccaaagaaaaagaaacccacattgtcatcaatgttgaag
aagaaagttacacctaaagatagaataaatcaaaggctcttgaatacccgagtaaccgat
tctgcaattaggcaggtgatgcagggggaagatttgaactacagacaagctttcccaaat
cagtggtag
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