Zingiber officinale (ginger): 121970139
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Entry
121970139 CDS
T08725
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121970139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121970139
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121970139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_16
TPR_11
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_15
BTAD
TPR_9
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
121970139
NCBI-ProteinID:
XP_042376571
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All DBs
Position
4A:90554961..90582807
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AA seq
1194 aa
AA seq
DB search
MEPEVPTMSDKELLMKLQEALGSDPDNPRHHYDLGIYLWERAEAMELSAEQVKQLKEKAA
EHFLASAKLNPSNGPAFRFLGHYYREVSVDAQRSVKCYQRAVALDSNDSEAGDALCDLLD
GEGKESLEMAVCKESSEKSPRAFWAFRRLGYLQIHQRRWSEAVPNLQHAIRGYPACADLW
EALGLAYHRLGMFTASLKSYGRAIELEESRIFALVESGYIHTILGSFRKGVEQFQFALQL
APHNISVNLGLASALLGWSKECVKSGAFVWAADLLREALEATKTSTSLSGNLFSAWKLQG
DIQIAYANCIPWENEKKGYDVDEEIFKLSIVSWKKERNSAANSSKHSYQRALHLAPWQAN
IYTDIAISIELIDSLEEKNKDGQDAWQLPEKMALGGLMLEGGNKEFWVLLGCLASNDALK
QHSLIRALQLDLSLSSAWAHLGKLYRSLGEKQLASEAFDHARSIDPSLALPWAGMSSGFD
DGLCSANEAYESCLWAVQILPLAEFQIGLGVLAVLSDHELSPQVFGAIQQAVHRAPFSSL
AHNLLGLVCESRTDYQSAVIAYQQARYILKNFPCFEGDVQAHFVDVSVNLARSLCKAGRA
IDAAHECDHLEKEGFLDGKGLQIYAVALWNLGQNNRALTVVRKLAENISTMKQTSANAAL
GLICTLVYNISGCDSVVATISKLPSNLLQSTRMSLIVCALNALDTNNRLQLLLPTISPAT
ASHGIVSEMHSLTAISKMITCESDQSLAIGKGVTYLKKALHMYPNNNLLRCHLGSLLLSS
EDWIAPAKASRCTVIPTGSLYPVKKGFKLPHEIHGAAAVACHSLCSTNPKFSFPTCDDCL
MHGARSLPLLQRWLHQEPWNQNARYLLILNLLQKAREQKFPQQLCITLKHLVSDAIYREN
LIENNHSHSRHFLLLLCASELSLQSGDALGCIRNATDALSLLPTSSDSFFAHLQLCRAYA
VQQDFSNLRNEYANCLQTKTLHPMGWLSLKYLASRYSLQKNSDIIDANFYACATTKGSSF
DHWIANFELVSAQCYMWDQEYLQAEQALTRACAANTNSCLLLCHGAICMELARRQAGPQF
VSAAISSLIKAQNNSPTLLPIVSLLLAQAEASFGAKTKWEKHLQHEWFAWPEEMRPAELY
FQMHLLAKQSNSGSIQDPGVASSQSPERWIQRAIHLNPSCSRYWKVLHKVIVSY
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaaccggaggttcctacaatgagcgacaaggagctcctcatgaagctacaagaggct
ttgggttcggatcccgacaatccccgccaccactacgacctgggcatttatttatgggaa
agagcagaagcaatggagctgtctgctgagcaagtgaagcagttaaaagagaaagcagcg
gagcatttcttggcctctgcgaagttgaaccctagcaacggccccgcgttccggttccta
gggcattactacagagaggtttcagtggatgcacagaggtcagtcaagtgctaccagagg
gctgttgccttggattccaatgactctgaagctggagatgcgttatgcgatcttttggat
ggggagggaaaggaaagcttggagatggctgtatgtaaggaatcatcagagaaatctccc
agagctttctgggcatttcgaagattgggatacttgcagatccaccaacgaagatggtct
gaggctgtaccaaaccttcagcatgcaatacgaggctacccagcatgtgcagatctgtgg
gaagcacttggtctggcataccatcgtttaggcatgtttactgcttctctaaagtcatat
ggacgagccattgagctggaggagtcaagaatatttgcattggtggagagtggttatatc
catacaatacttggttctttcagaaaaggagttgaacaatttcaatttgctttgcaatta
gcaccacataacatatctgtaaaccttggacttgcttctgcattgcttggttggtcaaag
gagtgcgtaaaatctggagcatttgtttgggcagctgatctcttgagggaagcattagaa
gcaaccaaaactagtacctctttatctggaaatttattttctgcttggaagttgcaaggg
gatattcagattgcatatgcaaattgcattccatgggaaaatgagaaaaaagggtatgac
gtagatgaggaaatcttcaagttgtcaattgtcagttggaagaaggaacgaaattctgct
gcaaacagttctaagcactcataccagcgtgctttacacttggctccatggcaggctaat
atttacactgatattgcaatctcgattgaattaattgactctctagaagagaaaaacaaa
gatggacaggatgcttggcagctgccagagaagatggctttgggtggtttgatgctggag
ggaggcaataaggaattctgggttctgcttggatgtttggcaagcaatgatgctctgaag
caacattctttgattagagcgttgcagttggatttatctctttcatcagcatgggcacat
cttggcaagctatatagaagcttgggagagaagcagttggcaagcgaagcatttgaccat
gcaagaagtattgatccttctttggcattgccatgggctggcatgtcatctgggtttgat
gatgggctttgctcggcgaatgaagcatatgaaagttgcctttgggctgtgcagatactt
cctcttgccgagtttcagattggtcttggtgtacttgctgttctttctgatcatgagctg
tctccacaggtatttggtgccatacaacaggctgttcatcgggctccattctcatctttg
gcacataatttactaggcttggtttgtgaatcacggacagattatcagtctgcagttatt
gcataccaacaggctagatatattttgaagaactttccatgttttgagggtgatgttcaa
gcacactttgttgatgtgtcagtcaaccttgctagatcgctatgtaaggcaggtcgtgca
attgatgctgcacacgagtgtgatcatttggaaaaagaaggcttcttagatggcaagggc
ttgcagatatatgctgtggcattatggaatcttggacagaataacagagctcttacagtg
gtgcgtaaactggctgagaatatctcgaccatgaagcagacatcggcaaatgctgccctt
gggttgatatgcactctagtatacaacatttcaggatgtgattctgtagttgcaaccatt
agcaaacttccaagtaatttgttgcaaagtacaagaatgagtcttattgtttgcgcattg
aatgctttagacacaaataataggctgcagttgctacttccaactatttctccagctact
gcttctcatggtatagttagtgaaatgcattcccttactgctattagcaaaatgatcaca
tgtgaatctgatcaaagtttagcaattggcaaaggagtaacttacctaaaaaaggctctt
catatgtatcctaacaataacttactgagatgccatcttggttcacttttattatctagt
gaagactggatagctcctgcaaaagcatctaggtgtactgtcattcctactggaagctta
tatcctgtaaagaaaggatttaaattgccgcatgaaatccatggtgctgcagcagttgcc
tgccattccttgtgttctaccaatccaaaattttctttccccacatgcgatgattgcctt
atgcatggagctagaagtttgcctttactacaaagatggttacatcaagaaccttggaac
caaaatgctcgctatttgcttattcttaatctattgcagaaagctcgtgaacaaaagttt
cctcagcaactttgcattacgttgaaacacttggtttcagatgccatttatagagagaat
cttatagaaaataatcactctcattcaaggcatttcctcttgctactgtgtgcatcagaa
ttaagtttgcagagtggtgatgctttaggatgtatacgtaatgctactgatgcgttaagc
cttctccctacatctagtgattcattttttgcacacctgcaactgtgccgtgcatatgca
gtgcaacaggacttctcaaaccttaggaatgagtatgctaactgtttacagacgaagaca
cttcatcctatgggatggttatcactaaaatatcttgcatctagatacagtttacagaag
aattcagacataatagatgcaaatttctatgcatgtgcaaccactaaaggaagttccttt
gatcactggattgctaattttgaattagttagtgctcaatgttatatgtgggatcaggag
tatttgcaagcagagcaagccttgacacgagcttgtgccgcaaatacgaacagctgcctt
ctactttgtcatggtgccatctgtatggagcttgctaggcgccaggcaggccctcagttt
gtgtctgctgcaattagcagccttatcaaggcgcagaacaattcacctactctcttgccc
atcgtttcattgttgttggctcaagcagaagcaagctttggtgcaaagaccaagtgggag
aagcaccttcaacacgaatggtttgcttggccagaagaaatgaggccagctgagctgtat
ttccaaatgcacttgctcgcaaaacaatcaaattcaggctctatccaagatcctggcgta
gcatcgagtcaaagccctgagaggtggatacaacgagctatacatttgaacccatcatgt
tcaaggtactggaaagtccttcacaaggttatagtttcatattga
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