Zingiber officinale (ginger): 121976905
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Entry
121976905 CDS
T08725
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121976905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121976905
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121976905
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CD59
Motif
Other DBs
NCBI-GeneID:
121976905
NCBI-ProteinID:
XP_042385245
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All DBs
Position
4B:complement(135620629..135627626)
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AA seq
448 aa
AA seq
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MPIMEHKSMAWRMSVNERKFIETALASDLRVDGRRPFDYRRLNIKFGREDGCSEVQLGET
HVMAYVTSELVQPYRDRPNEGILAIFTDFSPMADPSFEAGRPGESAIELGRVIDRGLRES
RAVDMESLCVVAGKLVWSIQVDLHIIDNGGNLVDAANVAALAALLTFQRPECTVGGDNGQ
DIIIHDPKVVEPLPLVIHHLPISVTFAFYNKGDIMVIDPTHKEESVMGGKMTATINSNGD
VCAIQKAGGEGVMPSVVMQCIRIASVKAADITSKLKNAVEVYNTERALRKVKRHPSKMAH
QVSVADITLEDKQVKDLPRHQAKMACQPYIGSSQDDEPKVDTRTSTNADGNSSGTHADAF
VGGPSKWDPYPLRVGTSQVLGTLTVVKEEQVVSDDHRAVECSLDHTTTSSSGTVSVSDAM
QKSNTSKSLKDAVKLKKRKKNRSSTTTR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcatggagcataaatcgatggcttggcggatgtcggtcaatgaacggaagttc
atagagaccgcactcgcttccgatctccgtgtcgacggccggcgcccttttgactaccgc
cggttgaacattaagtttgggagagaagatggttgttcagaagtgcaactaggtgagact
catgtgatggcttatgtgacttctgaactagtgcaaccgtatcgagatagaccaaatgaa
ggaattcttgctatattcactgatttttcaccaatggctgatccttccttcgaagcaggg
cgccctggagaatctgctattgaacttggtcgtgttatagatcgtggtcttcgggaaagc
agggcggtggatatggagtccctatgtgttgttgcaggaaaattagtgtggtctatccaa
gtggatctacacattattgataatggagggaatctagtagatgctgctaatgttgctgcc
ttggctgcccttttgacatttcaaaggcctgaatgtacagtaggaggagataatggccaa
gatattattattcatgatcccaaggttgtggaaccccttcctttggttattcatcatctt
ccaatttcagtgacttttgcattttataacaagggagatatcatggttattgatccaaca
cataaagaagagtctgttatgggaggaaagatgactgctacaataaattcaaacggtgat
gtttgtgcaattcaaaaagcaggaggagaaggtgtcatgccaagtgtagtcatgcagtgt
ataagaatcgcctctgtgaaagctgctgatatcactagtaaacttaagaatgcagtagaa
gtatacaacaccgaaagagcattacggaaggttaagcgccatccatctaaaatggcacac
caagttagtgttgcggatattacactggaggacaagcaagtcaaggatttgccaagacat
caagcaaaaatggcatgtcaaccatatataggctctagtcaagatgatgaaccaaaagtt
gatactagaacatctacaaatgcagatggcaacagtagtggcacacatgctgatgctttt
gttggtggcccatcaaaatgggatccatatccattgagggttggaacatctcaagtactt
ggtaccctaacggtagttaaggaagaacaagtagtaagcgatgatcacagggcagtcgaa
tgtagtcttgaccatacaaccacttctagttcgggaactgttagtgtttcagatgctatg
cagaaatctaatacttcaaaaagtttgaaagatgcagtgaagttgaaaaagagaaagaag
aatagatcatcgaccactaccagatga
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