Zingiber officinale (ginger): 121980895
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Entry
121980895 CDS
T08725
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121980895
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121980895
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
121980895
NCBI-ProteinID:
XP_042389100
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Position
5A:complement(88414213..88419748)
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AA seq
458 aa
AA seq
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MAAGMATESLRWPRWLALGLLVLVGWFGVEQIASSRIGVAAGEAAVARRNLRQTVAANQS
SSSGILESVSRDVAVGAVDDPEFVAAQVHKLIDNSTARRELGYLSCGTGNPIDDCWRCDP
EWHFNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPRPGTLRYAVIQDEPLWIV
FKRDMVITLSQELIMNSFKTIDGRGTKVHIAYGACITIQFVTNIIVHGLHIHDCKPTGNA
MVRSSPSHYGWRTIADGDGVSIFGSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFT
NHNEVMLLGHSDSYVRDKAMQVTIAFNHFGEGLIQRMPRCRYGYFHVVNNDYTHWEMYAI
GGSGDPTINSQGNRYLAPVNPFAKEVTKRVDTDSNVWKGWNWRSEGDLLLNGAYFTPSGA
GASGSYAKASSLGAKSSSMVGSITSGAGALRCLRRTHC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgggatggcgacggaatcactgaggtggcctcgctggctggctctcggtctt
ttggtgctcgtcgggtggtttggagtcgaacagatcgcctcatcgaggatcggagtggca
gcgggggaggcggcagtggcgaggaggaatttgagacaaactgtagcagctaaccagtct
tccagttccggtatactggagagtgttagtcgagatgtggcagtgggcgcggtcgacgat
ccggagtttgtcgcagctcaggtgcacaagctgatcgacaacagcaccgcacgtcgggag
cttggctacttgtcatgcgggaccgggaatcccatcgacgactgttggcgttgcgacccg
gagtggcacttcaaccgtaagcgcctcgccgactgcggcatcggcttcggccgcaacgcc
atcggcggccgcgacgggcgcttctacgtggtgaccgaccccggggacgacgaccccgtc
aatccccgcccgggcaccctccgctacgccgtcatccaggacgagccgctctggatcgtc
ttcaagcgcgacatggtcatcactctctcccaggagctcatcatgaacagcttcaagacc
atagacggccgcggtaccaaggtccacatcgcctacggcgcctgcatcaccatccagttc
gtcaccaacatcatcgtccacggcctccacatccacgactgcaagcccaccggcaacgcc
atggtccgcagttccccctcccactacggttggcgcaccatcgctgacggcgacggcgtc
tccatcttcggctccagccacatctgggtcgaccacaactccctctccaactgcgctgac
ggcctcatcgatgccatcatgggatccaccgccattaccatctccaacaactacttcacc
aaccataacgaggtgatgctgttaggtcacagcgattcttacgtgagggacaaagccatg
caagtaaccattgccttcaaccatttcggagaaggtctcatacaaagaatgcctagatgt
cggtatggctacttccacgtagtgaacaatgactacactcactgggagatgtacgccatc
ggtggcagtggcgatcccaccatcaacagccaaggcaacagataccttgccccggtgaac
ccattcgcaaaggaggtgactaagcgggtggataccgattcaaatgtgtggaagggttgg
aactggagatcagaaggcgatctcctattgaacggcgcctacttcaccccctctggcgcc
ggagcctcgggcagttatgccaaggcctccagcctgggggccaagtcttcctccatggtt
ggctccatcacctccggcgccggtgccctgcgctgcctccggcgcacccactgctga
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