Zingiber officinale (ginger): 121985218
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Entry
121985218 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121985218
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121985218
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121985218
NCBI-ProteinID:
XP_042394462
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All DBs
Position
5B:complement(102285961..102287952)
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AA seq
433 aa
AA seq
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MELGIKYSFFCLLFLANAALSAAHIAVYDDYWQKKAAEARNNTLNAYVPDPSTVVNHFNS
APLFDNGTRRGLAHRSETKGCFATNPIDRCWRCQKDWMNHRKRLATCAKGFGHSAIGGLH
GNFYVVTDPSDDDLMEPRPGTLRYGATRDAPLWIVFARDMVIRLQQELMINSYKTIDGRG
VNVHIAYGASLTVQFVQHVIIHNLHIHDIQPGAGGNIRDSETHWGIRTRSDGDGVSIFGS
SHVWVDHLSLSNCADGLIDAIQGSTAITISNCHLTRHNDVILLGANDAYTEDAKMQVTVA
YNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIGPPNQAAKE
VTHRDYGTEAEYNGWNWRSDRDLFMNGATFRQTGHQVATMYSKIDYIKARPGSWAGRLTR
FSGSLKCRANVPC
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggagttgggtatcaaatactccttcttctgcctcctcttcctagctaacgccgccttg
tcggctgcccacatcgccgtctacgacgattactggcagaagaaggcggcggaggctcgc
aataacacgctcaacgcctacgttcccgaccccagcaccgtcgtcaatcacttcaactcc
gccccccttttcgacaatggcacgaggagagggctggcgcatcgctcggagacgaagggc
tgcttcgccaccaacccgatcgatcggtgctggaggtgccagaaggactggatgaaccac
cgcaagaggctggcgacctgcgccaaggggttcgggcacagcgccatcggcgggctgcac
ggcaatttctacgtggtcaccgacccctccgacgacgacctgatggagcctcgtcccggc
accctccgctacggggccacccgcgacgccccgctctggatcgtcttcgcccgtgacatg
gtcatccgcctccagcaggagctgatgatcaacagctacaagaccattgacggccgcggc
gtcaacgtgcacatcgcctacggcgcctccctcaccgtccagttcgtccaacacgtcatc
atccacaacctccacatccacgacatccagcccggtgccggcggcaacatccgcgactcc
gagacgcactggggcatccgcacccgcagcgacggcgacggcgtcagcatcttcggctca
tcccacgtctgggtcgaccacctctccctgtccaactgcgccgacggcctcatcgacgcc
atccaaggctccaccgccatcaccatctccaactgccacctcacccgccacaacgacgtg
atcctattgggcgccaacgacgcctataccgaggacgccaaaatgcaggtcaccgtcgcc
tacaaccacttcggcagagggctggtgcagaggatgcccaggtgcaggttcggcttcttc
cacgtcgtgaacaacgactacacccactggctcatgtacgccatcggcggcagccagcac
ccgaccatcatcagccaaggcaacagatttatcggcccaccaaatcaagccgccaaggag
gtgacacacagggattacggaacggaagcagagtacaacgggtggaactggcgatcggac
agagacctgttcatgaacggagcaaccttccggcagacagggcatcaagtcgcaaccatg
tactccaagatcgactacatcaaggcgaggccagggagctgggcagggcggctgactcgc
ttctccggatccctcaagtgcagggccaatgtcccctgttaa
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