Zingiber officinale (ginger): 121997425
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Entry
121997425 CDS
T08725
Name
(RefSeq) protein transport protein SEC23-like
KO
K14006
protein transport protein SEC23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121997425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121997425
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121997425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Vps36-NZF-N
TopoV_HHH
Motif
Other DBs
NCBI-GeneID:
121997425
NCBI-ProteinID:
XP_042407756
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Position
6A:110797199..110804700
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AA seq
779 aa
AA seq
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MEEDFAGGATTVPDPDGPDGVRMTWNSWPRSKVEASKCVVPVAASFSPIRSSSSLTVLPY
LPLRCRPPCAAVLNPFARVDFGAKIWICPICFSRNQFPSHYAGISETNYPAELYAQCSTI
EYAPPHIDAAAPPPPPPVFLFVLDICLIEEELDFVKSAMRRAIGLLPDHALVGFITFGTQ
VLLHELGFADLTKVYVFRGTKEITKEQVLEQLGLSFAGVRHGSVAPGYPKGHQANALHPS
TSVNRFLLPASDCEYTLNALLDELQLDRWPVEAGNRPLRCTGVALSVAAGLLGACIAGTG
ARIIALIGGPCTVGPGMIVSEDQSEPVRSHKDLDKDAAPHFHKAIKFYDNLAKQLVNQGH
VLDLFASALDQVGVAEMKVVVERTGGLVVLAESFGHPVFKDSFKRIFEDGEQSLGLSFNG
TLEINCSKDIKIQGIIGPCTSLEKKGALSADTIVGQGNTTSWKMCGLDRTTCLTIFFDVS
PSEKSNQSGIPNPQLYIQFLTNYQNPDGQMRLRVTTVTRKWVDGSNTEELVEGFDQETAA
VVLARYISLKMEMEEEFDATRWLDRSLIRICSRFGDYRKDDPASFTLHPNFSILPQFMFN
LRRSQFVQVFNNSPDETAYFRMLLNRESITNSVVMIQPSLLSYSFNSPPTPALLDVSSIA
LDRILLFDAYFSIVIFHGVTIAQWRNIGYQNQPEHQAFAQLLQDPQVDAQAIIRERFPVP
RLVVCDQHGSQARFLLAKLNPSATYNSAHEVVPGSDIIFTDDVSLQVFCEHLQKLAVQS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacttcgcgggaggcgcaaccaccgtccccgaccctgacggacccgacggc
gtccgcatgacctggaactcctggccccgatccaaggtggaggcgagcaagtgcgtcgtc
cccgtggccgcttccttctccccgatccgatcctcctcctccctcactgtcctcccctac
cttccgctccgctgcaggccgccttgcgccgccgtccttaacccgttcgcccgcgtcgat
ttcggcgccaagatctggatctgccccatatgcttctcccgcaaccaattcccttcccac
tatgccggcatcagcgagaccaactacccggcggagctttacgcccagtgctccacgatc
gagtatgctcccccgcacattgatgccgccgcaccgccgccgccgcctcccgtgttcctc
ttcgttcttgacatatgcctcatagaggaggagcttgacttcgtcaagtccgccatgcgt
cgcgccatcggccttttgcccgaccatgcccttgtcgggttcatcaccttcggcacccag
gtcctcctccacgaactaggttttgctgatttgacgaaggtctatgtgttccgtggtacg
aaggagatcacgaaagagcaggtcttggaacagttggggctttcgttcgctggtgttcga
catggctctgttgctcctgggtatcccaagggacaccaggctaatgcgctgcatccttcg
acatccgtcaatagattcttgcttccagcatccgattgtgaatatactctcaatgctctg
ctagatgagttgcaattagatcgctggcctgtggaggcaggtaatcggccgctgcgttgc
actggagttgccctttctgttgcggctggcttactaggagcatgcattgctggtactggt
gctcggatcatagctttaattgggggaccgtgtactgttggccctggaatgatcgtgtca
gaagaccaatcagagccagtccgttcacataaagaccttgataaagatgctgctccccac
ttccacaaagctatcaagttttatgataatctcgcaaagcagctggttaaccagggccat
gtcctggacctttttgcttcagcacttgatcaggttggggttgcagagatgaaagtagta
gttgaaaggacaggtgggctagttgtccttgctgaaagttttgggcatccagtttttaag
gattcatttaagagaatatttgaggatggcgagcagtctcttgggctttcctttaatggt
acactagagatcaattgctcaaaggacatcaaaattcagggaattattggaccgtgtaca
tccttggagaagaagggcgctctctctgcagacactatcgtaggacaagggaatacaact
tcatggaagatgtgcggtctcgatagaactacttgtcttacaattttctttgatgtttca
ccgagtgaaaaatcaaatcaatctggaattccaaatccacagttgtatatacaattccta
accaactatcagaatcctgatggtcaaatgaggttacgtgttacaacagttaccaggaaa
tgggttgatggctccaatacagaggaattggtggaaggatttgaccaggaaactgcagct
gttgtattagcaagatatatatccttaaaaatggagatggaggaagaatttgatgcaaca
cgatggctggataggtctctcattcgcatttgttcacgatttggtgattaccgaaaagat
gaccctgcttcatttacactacatccaaacttctcgatcctaccacaattcatgtttaat
ttacgacgctcacaatttgtccaggtttttaacaacagccctgatgagactgcttatttc
cgtatgttgctgaatcgtgagagtatcaccaactccgtagtgatgatccagccttcactg
ctttcttactctttcaattcgccccctacccctgcattgttagatgtgtcatctatagct
ctagatcgcatattattgtttgatgcatatttcagtattgtcatttttcacggtgtgacc
attgctcagtggcgcaatattggatatcagaatcagccagaacatcaggcatttgctcag
ctattacaagatcctcaagttgatgctcaagcaatcatccgagaacgctttccagttccc
agattagttgtctgtgaccagcacggttcccaggcaagatttctgttggcaaagttgaac
ccatcagcaacgtataactccgcccatgaggttgttcctggcagtgatatcatatttact
gatgatgtcagtcttcaagttttctgtgagcatctccagaaattggctgttcagtcgtga
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