Zingiber officinale (ginger): 122003036
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Entry
122003036 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122003036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122003036
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122003036
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122003036
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
ARM_Cnot1
DUF3819
CNOT1_CAF1_bind
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
122003036
NCBI-ProteinID:
XP_042414402
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All DBs
Position
7A:142129841..142146516
Genome browser
AA seq
1308 aa
AA seq
DB search
MIAVIPFTSKILEPCHSSLAYQPPNPWTMGILSLLTEIYNLPNLKMNLKFDIEVLFKNLS
VDMKEVKPTTLLIDKIREVEGNPDFSNKDITAAHPPLVEINSGLLPPLSHVELQTEVNSS
SHPAGHPNAMAQYTSAPHITSGSILEEDRIGIVNGPELVSSVQGLTEVTPSPSPSPSPSP
SPSPSPFSLNQLLTIIPNSESYININPKLSSMGSNMQFHRIIQLAMDKAIREIVSPVIQR
SVTIASRTTKELVLKDYSMETDDGVISRSAHLMVGTLAGSLAHVTCKEPLRVALSSNLRG
LLQALNVANDHVEQIVQILTTDHLDLGCAVIENVASEKAVELIDGEMAPAFAASRKQREA
SGSAYFDTLSYAQGPLSRIPEALRPKPGRLSIPQQRVYDDFIKNIWQNQSGQNSTTSSHG
LSSLGSSVGNSSLPRVYGASSGSISSNVYVTSQVAPVSMTQPFDLTLEESDRGSVQLPSV
SPIYGADDSLMQHGVEVSSMVASVTSADLHMVDPAVATKDSTNVLASSSSPGMDRLGAVL
PESLLSTGEALEKYLQVAQKLEAMITADARDMEIQEAVAEIPEIILKCESRDEASLAIAQ
KVFKSLYENASNTLHIASHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIR
SELLNLAEYNVHLAKLIGGGRNKPATEFAISLVQTLATQEPGVSMSELYNLIEALSKLAM
KPGSPESLQQLMEIAKSNVNSPLSLNKEEKIRQFKDKKGLSGVSLTNREELDSNEPSPAD
PAGFYEQIATYFTDWCRICELPTTNESTYSHYISQLQQNGLLKGDDITDRFFRVFTELAV
TYCKVVHEQPQLLSFFSIDSYAKFVVLVLKYCSMDQGSTKSLLLPKILSVTVRTIQKDAE
EKKLSFNPRPYFRLFINWLLDLITPDTVDSVNFQVLTSFANAFHALQPLKVPGWSFAWLE
LVSHRSFMPKLLTCNGAKGWPFFQRLLVDLLKFMEPYLRNVELSEPVQLLYKGTLRVLLV
LLHDFPDFLCDYHFSFCDVIPSSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLPEISQP
PRILSDVDSILKAKQIKADIDEYLKTSEVSSFISELIPKLLLSQSEANLAGTPYNVPLIN
SLVLYIGMQATQLLQNKSTASTQQVNHNGPLDLFLVSTPREIFHSLINNLDSEGRYLLLN
AIANQLRYPNNHTHYFSFVLLYLFAESKQDSSIQEQITRVLLERMIVNRPHPWGLLITFI
ELIRNQRYDFWNCSFTRCSPEIEKLFESVSRTCVGPKAMSDAMVSGSI
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgattgctgtaatcccatttacctcaaagattctggagccatgccattccagtttagct
tatcaacctcccaacccttggactatggggattctaagtttgcttactgagatctataat
cttccaaacctcaaaatgaacctgaaatttgatatagaggttttatttaagaatcttagt
gtagatatgaaagaagttaaaccaacaactctattgatagacaagattcgtgaagtagag
ggtaatccagatttttcgaataaggacataactgcagctcatccacctcttgttgaaatt
aattcaggattattgcctccattgagtcatgtagaattgcaaactgaagtcaatagttca
tctcatccggcaggccatccaaatgcaatggctcaatatacttctgcaccacatatcact
tcaggttccattttggaagaagacagaattggaattgtaaacggacctgaactagtttca
tccgttcagggattgactgaagttactccatctccatcaccttccccttccccttcccct
tccccttccccttcacctttttctctgaatcagcttttgacaataattccaaattctgag
tcatatatcaatattaatccaaagcttagttctatgggttcaaacatgcagttccacaga
attattcaactggcaatggataaggccataagagaaattgtatctcctgttattcaacga
agtgttacaattgctagtaggacaacaaaggaacttgttttgaaggattattccatggaa
actgatgatggtgtcatatctcgttctgcccatctaatggttggaactctagctggaagc
ttggctcatgtgacgtgcaaggaacctcttcgtgtagccctttcaagcaatttaagaggt
cttcttcaagctttgaacgtggcaaatgatcatgttgaacaaatagttcagatcctcaca
actgatcatcttgatcttggttgcgctgtaattgagaatgtagcatcagagaaggctgtt
gaattgattgatggagagatggcccctgcatttgctgcctcgaggaaacagagggaagca
tctggatctgcatattttgataccctttcttatgcacaagggccactttcacgaatccca
gaggcacttcgtccaaaacctggtcgcctttccattccacaacagcgagtctatgatgat
tttatcaagaatatttggcaaaatcagtctggtcagaattcaactacttcatctcatggc
ctttctagtttaggcagttctgtgggtaattcttcactgccacgtgtgtatggtgcaagt
tctggtagcattagttccaatgtctatgtcacttctcaagtagctcctgttagcatgaca
caacccttcgaccttaccttggaagagtcagatcgtggttcggtacaacttcctagtgtc
tccccaatttatggtgctgatgatagtctcatgcaacatggggttgaagttagttctatg
gtagcttctgttacttctgctgatctacacatggttgatccagcagttgcaaccaaagat
tcgacaaatgtcttagcatcatcttcttcacctggtatggaccgtcttggagctgtttta
cctgaatcattgctgagcactggggaggctttggagaaatacctgcaagttgctcaaaag
ttggaagcgatgattactgctgatgccagagacatggaaattcaggaagcagttgctgaa
attccagaaatcatattgaaatgtgaaagtagagatgaagcctcattagctatagcccaa
aaggttttcaagagcttgtatgaaaatgcatcaaacactctccatattgcttcacatcta
gcaattctagcagccatacgagatgtttgcaaacttgttgtcaaagaattgacaagctgg
gtaatttactctgatgaggaacggaaattcaacaaagacataactgtgggccttattcgt
tctgagttactcaaccttgccgagtacaatgtccatttggctaaacttataggcgggggg
agaaataagcctgcaactgagtttgccatatcccttgtgcaaactttggctactcaggaa
cctggtgtaagcatgtcagagctatataatctcattgaagctttgtcaaagttggctatg
aagcctgggtcaccagagtcattgcaacaattaatggagattgctaagagtaatgtaaat
tctcctttatctttgaacaaagaagagaagatcaggcaattcaaggataagaagggtctt
tctggagtttccttgacaaacagggaggagcttgattctaatgaaccatcacctgctgat
cctgctggtttctatgagcagattgctacctactttactgattggtgccgaatttgtgaa
cttcccacaacaaatgaatcaacctacagtcattatatttcccagctgcagcagaatggt
ttgttaaagggtgatgatatcacagaccgtttttttcgcgtgttcacggagttagctgtc
acttattgtaaagttgtgcatgaacaaccacagttgctatcttttttctcaattgattca
tatgcgaagtttgtggttcttgtgttaaagtactgttctatggatcagggatcaactaaa
tctcttctgcttccgaagattttatctgttactgtaagaaccatccaaaaggatgcagaa
gagaaaaaactttccttcaacccaagaccatatttcagattgtttatcaattggcttttg
gatctaattacccccgacacagttgatagtgtcaactttcaggtgttgacatcttttgca
aatgctttccatgcattgcagcccttaaaagttcctggttggagctttgcatggcttgag
ttggtgagtcacagaagcttcatgccaaaactactcacgtgcaatggtgccaagggttgg
ccattcttccagcgcttgcttgttgatctactcaagttcatggagccatatttaagaaat
gtggaactttcggaaccggtgcaactgttatataaagggactcttagagtgcttcttgtt
ctgctccatgattttcctgacttcctctgtgattatcactttagtttctgtgatgtgatt
ccttcaagttgcatccaaatgcgaaacgtcattctaagtgctttcccacgaaatatgcgg
cttcctgatccatcaactcccaacttaaagatcgatttgcttccagaaattagccaaccc
cctcgtattctttctgatgtagatagtattttaaaagcaaaacaaatcaaagctgatatt
gatgagtaccttaagacatctgaagtatcctcattcataagcgaactgattccaaaatta
cttctttctcaaagcgaagcaaacttggctgggactccttataatgtaccattgatcaac
tcacttgttctttacatagggatgcaggctacacaattactgcagaacaagtctactgca
tccacccaacaagtgaatcacaatggtccattggatcttttcctagttagcacgcctagg
gagatctttcatagtttaataaataacctggactcagaaggacgttacctcttactaaat
gcaatcgctaatcaactgcgatacccgaacaaccacactcattacttttcttttgtcctg
ctgtacttattcgctgagtccaaacaggacagcagcatacaggagcaaataactcgagtg
ctgttggagcgaatgattgttaatcgtccccatccctggggcttactcatcactttcatc
gaactgatcaggaaccagcggtatgacttttggaattgttcattcacgagatgttctcca
gagattgaaaagttgtttgaatccgtgtcgaggacctgtgtcggccccaaagctatgagc
gacgcaatggtatcgggtagtatttga
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