Zingiber officinale (ginger): 122004267
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Entry
122004267 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122004267
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122004267
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122004267
NCBI-ProteinID:
XP_042415116
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Position
7B:complement(25938564..25940297)
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AA seq
440 aa
AA seq
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MDSKPRFLFSSLLFLTFFVTFAAAHIGQFDEYWKKKAELAEVKNRASYNPDPDSVTSHFN
AEVHTYVANNTRRGLRGKRMNSRNEPCVATNPIDRCWRCRSDWSKNRKLMAKCAKGFGRH
TTGGLDGRFYIVTNPADDDMVNPKKGTLRWGVIQDRPLWIVFASDMIIRLNEELIVNSNK
TIDGRGYNVRIVGGASMMLQFIHNVIITNLHIHDIVPGDGGMIRDSETHYGFRTRSDGDG
ISIFGSSNIWIDHVSMANCGDGLIDAIMGSTAITISNSHFTQHNDVMLFGASDSYSGDAI
MQITVAFNHYGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSKNPTILSQGNRFIAPP
NIFAKEVTKREYSPENIWKDWNWRSEGDLLMNGAVFVPSGVDPNTNSIDERDLIKAKPGT
FVTRLTRYSGALDCVRGRPC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaagcccaggtttctcttctcctctcttcttttcttaaccttctttgttacg
ttcgccgccgcccacattggccaattcgatgaatactggaagaagaaggctgaattagcc
gaagttaaaaatcgagcctcctacaaccctgacccggactcagtcaccagccacttcaat
gctgaagtccacacgtacgtggcgaacaacacgagaagaggattgcgcgggaagaggatg
aacagtaggaatgagccatgcgtggcgacgaacccgatcgaccgttgctggcggtgccgc
agcgactggagcaagaaccggaagctaatggccaagtgcgcgaaggggttcgggcggcac
acgaccggcgggttggacgggcggttctacatcgtcacgaacccggccgacgacgacatg
gtgaacccgaagaaggggacgctgcggtggggcgtgatccaggaccgtccgctgtggatc
gtcttcgccagcgacatgatcatccggctcaacgaggagctgatcgtgaacagcaacaag
accatcgacggtcgcggctacaatgtccggatcgtcggcggcgccagcatgatgctccag
ttcatccacaacgtgatcatcaccaacctccacatccacgacatcgtccccggcgacggc
ggcatgatccgcgactcggagacgcactacggcttccgcacacgcagcgacggcgacggc
atctccatcttcggctccagcaacatctggatcgaccacgtctccatggccaactgcggc
gacggcctcatcgacgccatcatgggatccaccgccatcaccatctccaactcccacttc
acccagcacaacgatgtgatgctgttcggggccagcgatagctactctggggatgcgatc
atgcagatcaccgtcgccttcaaccactacgggagaggactcgttcagagaatgccaagg
tgtcgatggggtttcgtgcacgtcgtgaacaacgactacacgcactggttgatgtacgcc
attggcggcagcaagaaccctaccattctgagccagggcaatcgattcattgctccaccc
aacattttcgccaaggaggtgacaaagagagagtattctccggagaacatatggaaggac
tggaactggagatcagaaggtgacctgttgatgaacggagcagtgtttgtgccatcagga
gtggatcccaacaccaactcaatcgacgagagagatctcatcaaggctaagcccggcacc
ttcgtgaccaggctcacccgctattccggcgcgctcgattgcgtccgcggccggccttgt
taa
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