Zingiber officinale (ginger): 122005040
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Entry
122005040 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122005040
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122005040
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122005040
NCBI-ProteinID:
XP_042415881
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Position
7B:2665716..2667953
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AA seq
437 aa
AA seq
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MEFCLKFLSFSLLFLASATLPYGHIAFFDDFWQNRAAEARNNTLNAHVSDPETVVNSFNA
AAANFPISNRTGRSLQGRGKRGGLCFATNPIDRCWRCRADWASDRKRLAQCSKGFGHAAS
GGVLGRMFVVTDPSDDDLMDPRPGTLRYGVTRAAPLWIVFARDMVIRLQQELMINSYKTI
DGRGADVHIAYGAGLTIQFVQHVIVHNLHIHDIKPGSGGNIRDSEHHWGIRTLSDGDGIN
IFGASNIWIDHISMFNCADGLIDAIEASTAITISNCHLTRHNDVILLGASDSNSADAKMQ
VTIAYNHFGHGLVQRMPRCRWGFIHVVNNDYTHWLMYAVGGSMHPTIICQGNRFLGPPNQ
AAKEVTHRESAAESEWKNWNWRSEDDLYMNGAFFVQSGLDTAGGFSGHQLIKAKPGTAVG
RLTRFAGVLDCRPNRPC
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagttttgtcttaaattcttatccttctctctgcttttcctcgcctctgctactctg
ccctacggccacatcgccttcttcgacgacttctggcagaatcgcgcggctgaggctcgc
aacaacacgttgaatgcccacgtctccgatccggagaccgtcgtcaacagcttcaatgcg
gccgcagccaattttccgattagtaacagaacggggagaagcctccagggccgaggcaag
agaggtggcctgtgcttcgcgacgaatcccatcgaccgatgctggcggtgccgcgcggat
tgggcgagcgaccgcaaacgtctggcgcagtgctccaaggggttcggccacgccgcctcg
ggcggcgtcctcgggcggatgttcgtggtgaccgacccctccgacgacgacctcatggac
ccccgccccggcacgctccggtacggcgtcacccgcgccgcgccgctgtggatcgtcttc
gcccgcgacatggtcatccgcctgcagcaggagctgatgatcaacagctacaagacgatc
gacgggcggggcgccgacgtgcacatcgcctacggcgcggggctcaccatccagttcgtt
cagcacgtgatcgtccacaatttgcacatccacgacatcaaacccggctccggcggcaac
atccgcgactccgagcaccattggggcatccgcaccctcagcgacggcgacggcatcaac
atcttcggcgcctccaacatctggatcgaccacatctccatgttcaactgcgccgacggt
ctcatcgacgccatcgaggcctccaccgccatcaccatctccaactgccatcttacccgc
cacaacgacgtgatcttgttgggtgccagcgactcgaattcagcggatgctaagatgcag
gtgacgatcgcgtacaaccactttgggcacggcctcgtgcagaggatgcccaggtgccga
tggggattcatccacgtggtcaacaacgactacacgcattggctgatgtacgccgtcggc
ggcagcatgcaccccaccatcatctgccaaggcaaccgatttctcggcccgccaaatcaa
gccgccaaagaagtgacgcacagggagtccgcggctgaatccgagtggaagaactggaac
tggcggtcggaggacgacctgtacatgaacggagccttcttcgtgcagtcgggcctcgat
acggctggtggcttttccgggcaccaactcatcaaggcgaagccggggacggcggtcgga
cgcctcactcgcttcgccggcgttctcgactgccgccctaatcgcccctgctga
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