Zingiber officinale (ginger): 122006192
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Entry
122006192 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122006192
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122006192
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122006192
NCBI-ProteinID:
XP_042417534
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Position
7B:86779785..86781735
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AA seq
435 aa
AA seq
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MEFGVKYFFFYLLFLANAVFLSSAHIAFYDDYWQKKAEEARNNTLNAYVTDPSTVVNHFN
SAPLFDHNSTRRGLGHRAKVKGCLATNPIDRCWRCQPNWVNNRKKLALCAKGFGHDAIGG
LHGKIYVVTDTSDDNLLDPRPGTLRYGVTRDAPLWIVFARDMVIRLQQELMINSYKTIDG
RGANVHIAYGAGLTIQFVSHVIVHNLHIHDIKPSSGGNIRDSETHWGVRTRSDGDGVSIF
GSSHIWVDHLSLSNCADGIIDAIEGSTAITISNCHLTRHNDVILLGASDSYSDDAKMQVT
VAYNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSMHPTIISQGNRFMGPPNQAA
KEVTHREYGTEAEYAKWNWRSENDQYLNGAVFTQTGHKVSTKYSKLDYIKAKPGSWVARL
TRFSGCLNCKANGPC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggagttcggcgtcaaatacttcttcttctacctcctcttcctagccaacgctgtgttt
ttgtctagcgcccacatcgccttctacgacgattactggcagaagaaggccgaggaggca
cgcaataacacgctcaacgcctatgtgaccgaccccagcaccgttgtcaaccacttcaac
tccgcgcccctttttgatcataatagcacgaggagagggctggggcaccgtgcgaaggtg
aagggctgcttggccaccaaccccatcgatcggtgctggaggtgtcaaccgaactgggtt
aacaaccgcaagaagctggccctgtgcgcaaaggggttcggccacgacgccatcggcgga
ctccacggaaaaatctacgtggtcaccgacacctccgacgacaacctgctcgaccctcgt
cccggcacgctccgctacggagtcacccgcgacgcccccctctggatcgtcttcgcccgc
gacatggtcatccgtctccagcaggagctgatgatcaacagctacaagaccatcgacggc
cgcggcgccaacgtgcacatcgcctacggcgccggcctcaccatccagttcgtcagtcac
gtcatcgtccacaacctgcacatccacgacatcaagcccagctccggcggtaacatccgc
gactccgagacccactggggcgtccgcacccggagcgacggcgacggcgtcagcatcttt
ggctcctcccacatctgggtcgaccacctctccctgtccaactgcgccgacggcatcatc
gacgccatcgaaggctccaccgccatcaccatctccaactgccacctcacccgccacaac
gacgtgatcttattgggcgccagcgactcctactccgacgacgctaaaatgcaggtcacc
gtggcctacaaccactttggcagaggcctcgtgcagaggatgcccaggtgccgatggggc
tttttccacgtcgtgaacaacgactacacccactggctgatgtacgccatcggcggcagc
atgcatcccaccatcatcagccaaggcaaccgattcatgggcccgccaaatcaagctgcc
aaggaggtgacgcacagggagtacggaacggaagcagagtacgctaaatggaattggagg
tcggagaacgatcagtacctgaacggagcggtcttcacccagacagggcataaagtgtcg
acgaaatactcgaagctcgactacatcaaggcgaaacccgggagttgggtggcgaggttg
actcgcttctcaggatgcctcaattgcaaggcgaacggtccatgttga
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