Zingiber officinale (ginger): 122009600
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Entry
122009600 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122009600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122009600
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122009600
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122009600
Complex C
U5 SnRNP specific factors
122009600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
122009600
NCBI-ProteinID:
XP_042421750
LinkDB
All DBs
Position
8A:75952426..75960951
Genome browser
AA seq
2171 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAS
RGKPPELEEKLKKSKKKKEREPALEPEQKKDSKRRRLQDESVLSLTDDAVYQPKTKETRA
AYEALLSVIQLQFGGQPQDILSGAADEVLAVLKNEKIKNPDKKKEIEKLLNQISNQVFDQ
LVSIGRLITDYQDGSLADSAIADGKDEALDDTGVAVEFEEDEEEEESDFDQVQEESEDDD
DVQEQNAGAMQMGGIDDEDIEETNEGLTINVQDIDAYWLQRKISQAYEDIDPQQSQKFAE
EVLKILAEGDDRDVENRLVMLLDYDKFQLIKLLLRNRLKIVWCTRLARAEDQDQRKKIEE
EMENTGPSLATILEQLHATRASAKERQKNLEKSIREEARRLKDEHGGGESDRDRRVVDTV
HSTDSGWLKGQRQLLDLDNIAFNQGGLLMANRKCELPPGSYRTPHKGYEEVHVPALKQKS
FAPGEELVKISDLPGWAQPAFEGMKQLNRVQSKVYQTSLFTPENILLCAPTGAGKTNVAM
LTILQQLGLNMKDGILDTSKFKIVYVAPMKALVAEVVGNLSHRLKSFNIVVKELSGDQNL
TRQQIEETQIIVTTPEKWDIVTRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART
VRQIETTKELIRLVGLSATLPNYEDVALFLRVHPSKGLFHFDNSYRPCPLAQQYIGITIK
KPLQRFQLMNEICYEKVMAAAGKHQVLIFVHSRKETAKTARAIRDTALANDTVSRFLKDD
SASREILNSQTEFVKSIDLKDLLPYGFAIHHAGMARVDRDLVEELFADGHVQVLVSTATL
AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIILTGHSE
LQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACTWIGYTYLYIRMLRNPTL
YGLPADILDKDKTLEERRADLIHTAANILDKNNLVKYDRKSGYFQVTDLGRIASYYYITH
GTISTYNEYLKPTMGDIELFRLFSLSEEFKYVTVRQDEKMELAKLLDRVPVPVKESLEEP
SAKINVLLQAYISQLKLEGLSLTSDMVFIQQSAGRLIRSLFEIVLKRGWAYLTEKALNLC
KMVDKRMWSVQTPLRQFTGIPNEILMKLEKKDLSWERYYDLSSQEIGELIRFPKMGRQLH
RCIHQLPKLNLLAHVQPITRTVLSFELTVTPDFQWDDAVHGYVEPFWVIVEDNDGEYILH
HEYFMLKKQYIDEDHILNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVCFRHLILPEKY
PPATELLDLQPLPVTALRNPAYEALYDAFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK
TICGEFALLRNHQKGPDSIMRAVYIAPIEAVAKERYRDWEEKFGKHLGIRVVELTGETAT
DLKLLDKGQIIISTPEKWDALSRRWKQRKQVQQVSLFIVDELHLIGGEMGPILEIIISRM
RRIASHIGSNIRIVALSASLANAKDVGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDISN
FEARMQAMTKPTYTAIVQHSKNGKPALVFVPTRKHTRLTALDLCTYSSADSGEKPAFLLG
SEEEMETFISGIKEDTLKRTLPLGVGYLHEGLSDFDQEVVKQLFLGGRIQVCVATSSMCW
GQSLPAHLVVVMGTQFYDGRENAHTDYPITDLLQMMGHASRPMKDNSGICVILCHAPRKE
YYKKFLFEAIPVESHLHHFLHDHMNAEVVVGVIENKQDAVDYLTWTFMYRRLTKNPNYYN
LQGVSHRHLSDHLSELVENVLSDLEASRCVAIEEDMYLKPLNLGLIASYYYISYTTIERF
SSSITSKTKMKGLLDILASATEYAQLPIRPGEEELIRKLINHQKFSFENPKCTDPHVKAN
ALLQAHFSRHTVVGNLAADQREVLLSAHRLLQAMVDVISSNGWLSLALSAMDLSQMVTQG
MWDRDSTLFQIPHFTKELVKRCQENPGRSIDSVVDLLEMEDDRRHELLQMSDSQLLDIAR
FCNRYPNIDMAYEVLEGEDIRPGENVTMQVMLERDHEGRADIGPVDAPRYPKPKEEGWWL
VVGDTSTNQLLAIKRVALQRKIKVKLVFTAPSEVGEKNFTIYFVSDSYLGCDQEYKFAIN
VKEAGDGNASD
NT seq
6516 nt
NT seq
+upstream
nt +downstream
nt
atggcccatctcggtggtggtgctgaggctcatgcccggttcaagcagtacgagtaccgt
gccaattcgagcctcgtgctgaccaccgactcacgacctcgagacacccatgagcccacc
ggagaacccgagtccctgtgggggaagattgatcccaagagtttcggggatcgtgcttcc
cgtggcaagccccctgagctcgaagagaagctcaagaagtcgaagaaaaagaaggagcgg
gagccggcactcgagcctgagcaaaagaaggacagcaagcgccgtcggctacaggacgag
agcgtgctttccctcacggacgatgccgtgtaccaaccgaaaaccaaggagactcgtgca
gcttatgaggctctgctcagcgtgatccaactgcagtttggcgggcagcctcaggatatt
ctcagtggggcggcagatgaagtcttggcggttttgaagaatgaaaagataaaaaatcca
gacaagaagaaggagatcgagaagctcttgaaccaaatatccaaccaggtgtttgatcaa
cttgtctccattggtagattgattacggattaccaggatggcagcttggctgattcagcc
atcgcagatggtaaagatgaggcacttgatgatactggcgtggctgttgaattcgaagag
gatgaggaggaagaggaaagtgattttgatcaggtacaagaggaatcagaagatgatgat
gatgtccaggaacaaaatgctggtgctatgcagatgggtgggattgatgatgaggacatt
gaagaaactaatgagggtttaactattaatgtccaagacattgatgcttactggcttcag
aggaagatatctcaagcttatgaagatatagatccacaacaaagccagaagtttgctgaa
gaagtgctgaaaatacttgctgaaggtgatgatagggatgttgagaaccggcttgtaatg
ctgctggactatgacaagtttcagcttattaagttgttgcttcggaatcggctcaagata
gtctggtgtactcggttggctagggctgaggatcaagaccagcgaaagaaaattgaggaa
gaaatggaaaatacaggccccagcctagccacaatcttggagcagctgcatgccactaga
gcatcggcaaaggagcgccaaaagaacttggagaagagtataagagaggaagctaggcga
ttgaaagatgaacatggtggtggagagagtgatcgagatcggagggttgttgatacagtg
cattccacagacagtgggtggttgaaggggcaaaggcagttgcttgaccttgataacatt
gcattcaatcagggtggtcttttgatggcaaacaggaagtgtgaacttcctcctggttca
tatagaactccccacaagggctatgaggaagttcatgtgcctgcgctaaaacaaaagtca
tttgctcctggagaggaacttgtaaagatatcagacttgcctggttgggcacagcctgca
tttgaagggatgaaacagctgaatagagtccaaagtaaggtgtatcaaacttctcttttt
acacctgaaaatatacttctgtgcgcgcctactggagctgggaaaacaaatgttgctatg
ctcaccattttacagcagctcggcttaaatatgaaggatgggatcttagacactagcaag
ttcaagattgtttatgttgccccaatgaaagctttggttgcggaagttgttggtaacttg
tcacatcgtttaaaatcttttaatattgttgtgaaggaacttagtggagatcaaaacctc
acacgccaacagattgaagaaactcagattattgttaccacaccagagaagtgggatatt
gtcacaagaaaatctggagatagaacctatacacaacttgtaaagctactcataatcgat
gagattcatcttctgcatgataatcgaggtcctgttctagaaagtattgtcgcaaggaca
gtaagacagattgaaacgacaaaggaattaattagattggttggtttatcagctactctc
ccaaattatgaagatgtggcattgtttttacgtgttcatccatcaaaaggacttttccat
tttgacaatagttacaggccttgtcctctcgcacaacaatatattggcatcacgatcaag
aaaccgttgcaacgttttcaattgatgaatgaaatatgctatgaaaaggttatggctgca
gcaggaaagcatcaagtgcttatctttgttcattcaaggaaggaaacagccaaaactgct
cgtgcgatacgtgatactgccttggctaatgacacagtaagccgcttcttaaaggatgac
agtgcaagccgtgaaattcttaacagccaaactgaatttgtcaagagcattgatcttaaa
gatctcctgccatacggatttgctattcatcatgcaggtatggcaagagttgatcgagat
cttgttgaggagctctttgccgatggccatgtacaggtgttggtttctactgctactctt
gcttggggtgtcaatctgccagcacacacagtcatcataaaaggcacacagatatataac
cctgaaaaaggagcttggactgaactaagtccattggatgtcatgcagatgcttggtcgt
gcaggaaggcctcagtatgactcttatggagaaggtattatcttaactggccacagtgaa
ctacagtattatctctcccttatgaaccagcaattgcccattgagagtcagtttgtatcc
aagttggctgatcagttaaatgcagagatagttttgggaacagttcaaaatgccagagaa
gcatgtacttggatagggtatacttacctttacattcggatgcttagaaacccaactttg
tatggtttgccagctgatatccttgataaagacaaaacattagaggaaagaagagctgat
ctgattcacactgctgcaaacatattggacaaaaacaatttagtcaaatacgacaggaag
agtgggtatttccaagtcacagatctgggaagaattgcgagttattattatatcactcac
gggactatctctacatataatgagtacttaaagccaacaatgggtgatatagagcttttc
cgattattctctcttagtgaagaattcaaatatgtaactgttcgccaagatgagaagatg
gaattggcaaaactcttggaccgtgtgcctgttcctgtgaaggaaagcttggaggaacct
agtgcaaaaatcaacgttctcttgcaagcatatatatcacaattgaaacttgagggactt
tccttgacatctgatatggtttttattcaacagagtgcaggtcgactcataagatcactg
tttgagatcgtcttaaaaaggggctgggcttatttaactgaaaaagctcttaatctttgc
aagatggtcgacaagcgtatgtggagtgttcaaactcctctgaggcagttcactggtata
cccaatgaaattctgatgaaactagaaaagaaggatttgtcctgggaaaggtattatgac
ctctcatcccaggagattggggagttgattcgtttccctaaaatgggtcggcagcttcac
agatgcatacaccaattgccaaaattgaatcttttggcacatgttcaacctatcacacgt
actgtcctgagtttcgaattgactgtgacacctgattttcagtgggatgatgctgttcat
gggtatgtggaaccgttttgggttattgtcgaggataatgatggtgagtatatccttcat
catgaatatttcatgcttaagaagcaatacatagatgaagatcatatcctgaacttcact
gttcccatttatgagccgctgccacctcaatatttcattcgtgtagtatcagataagtgg
cttggttctcaaacagttttgcctgtctgtttcagacacctaattctaccagagaagtac
cccccagcgactgagttattggatttgcagcctctaccagtcactgctttaaggaatcct
gcatatgaagctctttatgatgcattcaagcatttcaatcccatccaaacacaggtgttt
actgttctgtacaatactgatgacaatgttttggttgctgcccctacaggcagtgggaaa
actatatgtggcgagtttgcattgctccgaaatcatcagaaagggcctgatagcattatg
agagctgtgtatattgctcctattgaggctgttgcgaaagaaaggtatcgcgattgggaa
gagaaatttggaaagcatttaggaattcgtgtagtggagttgactggagagactgctact
gacttgaagctgcttgataaaggacagatcataatcagtactccagagaaatgggatgca
ctctctcgcagatggaagcaacgcaagcaagtacagcaagttagcctcttcattgtagat
gagcttcatttaattggtggagaaatgggacccatcttggaaattatcatctctaggatg
agacgtattgctagtcacattggtagcaacattcgaattgtagcactttcagcatccctt
gcgaatgctaaagatgttggtgaatggataggtgctacttctcatggcttgttcaatttt
ccacctggtgttcgtcctgttcctttagagatacatattcaaggtgtggacatatcgaac
tttgaggcaagaatgcaggcaatgaccaaacctacatacactgctattgttcaacactcg
aagaatggaaaacctgcactggtatttgtacccaccaggaagcatacaaggctgactgca
ttagatctgtgtacttactcaagcgctgacagtggagaaaagcctgcttttcttcttggt
tcagaggaagagatggaaactttcatatcagggatcaaggaagataccctaaaaaggact
ctccctctcggtgtgggttacttgcatgaaggccttagtgactttgatcaagaagttgta
aagcaattgtttcttggtggaagaattcaagtgtgtgttgccaccagttcaatgtgctgg
ggtcagtcattgccagcccacttggtggtagtgatgggtactcaattttatgatggacga
gagaatgctcatactgactatccgatcactgatctgctgcagatgatgggtcatgccagc
agacctatgaaagataattctggtatatgtgtcatcttatgccatgctcctaggaaagag
tattataaaaagttcctttttgaggccatcccagtagagagccatttgcatcatttcctg
catgatcatatgaatgctgaagtagtagttggggttatagagaataagcaagatgctgtt
gattatcttacttggaccttcatgtacaggaggctcactaagaatccgaactactataat
ctgcagggtgtcagtcataggcatctctctgatcacctttctgaactcgtagagaatgtt
ctgagtgacttagaagcaagcagatgtgttgccatcgaggaggatatgtaccttaaaccc
ctgaatcttggcttaattgcttcatattattacatcagttacaccactattgaacgattc
agttcctccataacttctaaaactaagatgaaaggtctcctggatatcttggcatcagct
acagagtatgcacagcttcccattagacctggtgaggaagaactgattagaaagttgatc
aaccatcagaagttttcctttgagaaccccaaatgcactgatcctcatgttaaagcaaat
gctctactgcaagctcacttctcacgacacacagtggtagggaaccttgcagcagaccag
cgagaagttctcctttctgctcatagattgcttcaagctatggttgatgttatatcaagc
aatggatggctaagccttgccctttctgcaatggatttgagtcaaatggtcacccagggc
atgtgggatcgggattccacactttttcaaattcctcatttcactaaggagttggttaag
agatgccaagaaaacccagggaggagtattgattctgttgttgatctgttagaaatggaa
gatgatcgaaggcacgagttgctgcaaatgtcagattcccagttgcttgatattgctcga
ttctgcaaccgttatcctaatattgacatggcatatgaagtactggagggtgaagatatt
aggcctggggaaaatgtgacaatgcaggttatgctggaacgtgatcacgaaggacgtgct
gatattggacctgttgatgctccaaggtatcccaagccaaaagaagaaggatggtggctc
gtagttggtgatacctcaaccaatcagttgttggccatcaaaagagtagcattgcaaaga
aagataaaagtcaagctcgtcttcactgctccttcggaggttggggagaagaactttacc
atctacttcgtctctgattcctatctgggctgcgatcaggagtacaagtttgcaatcaat
gtcaaagaagctggagatggaaatgctagtgactga
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integrated database retrieval system
