Zingiber officinale (ginger): 122019959
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Entry
122019959 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122019959
03015 mRNA surveillance pathway
122019959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122019959
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122019959
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122019959
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Arg_decarbox_C
Motif
Other DBs
NCBI-GeneID:
122019959
NCBI-ProteinID:
XP_042433549
LinkDB
All DBs
Position
9A:133728580..133739633
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AA seq
495 aa
AA seq
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MADSESATTKTEPKLSWADVESDEEKEASALSSEAAVPSELNKIESLSIADVKDGENQAA
DVPDASRLLEDPDESDIKAVTSGDTVYTSAVAFEDLNLSNELINGLYVEMGFSRPSKIQA
ITLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPSKKVPQAICVCPTRELAQQNHA
VLMKMGKYTGITAMCAIPTDSSSYIPINKRPPVTDQVVIGTPGTIKKWTTAKKLSTRDIK
ILVFDEADHMLAEDGFRDDSERLRKEIQRSSGGCQVLLFSATFNENVKAFVSRVIYDGNQ
IFVKKEELTLEKVKQYKVLCPNENAKIEVIKNKIFEFGQKVGQTIIFVRTRHSASMLHRS
LSQEGYECTSVQGALSQEDRDKIIKEFKDGLTKVLITTDLLARGFDQRQVNLVINYDLPV
KHTNPSEPDCELYLHRVGRTGRFGSKGAVFNFLCTDRDKLVMEKIQQHFQHPIPEISDWR
SEEAFESALKDAGLL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagcgagtcggcaacgacgaagacggagccgaagctgtcctgggcggacgtg
gagtccgacgaggaaaaggaagcgtcggcgctctcgtcagaggctgccgttccctcggag
ttgaacaagatcgaatccctctccatcgccgatgtgaaggatggtgaaaaccaggcagcg
gacgtacctgatgccagtcgcctgctggaggaccctgacgaatccgatatcaaagccgtt
acatctggcgatactgtttatacgtccgctgtggcgtttgaagacttgaatttgtcaaat
gaactgatcaacgggttatatgtggaaatgggttttagcaggcccagcaagattcaggct
attactctgcctatgattcttacacctccgtataaagatttggtagctcaagctcataat
ggatcgggtaaaacaacttgttttgtgttggggatgttgagccgagttgatccaagcaag
aaggtgccccaagccatctgcgtttgtcctactagggagcttgctcagcagaatcatgcc
gtcctcatgaagatggggaagtatactggcataactgcaatgtgcgcaataccaaccgat
tcttctagttatattcctataaacaaacgacctccggtgactgaccaagtcgtgattggc
actccggggaccatcaagaagtggacaacagcaaaaaagttgagcacaagggatattaaa
atacttgtttttgatgaggcagatcacatgctagctgaggatggctttagggatgattct
gaaagacttaggaaagagattcaaaggagtagtggtggttgccaggtacttcttttttct
gctaccttcaatgaaaatgtgaaggcatttgtctcaagagtaatttacgatggaaatcaa
atatttgtgaagaaagaggaacttaccttggaaaaagtaaaacagtataaggtcctttgt
ccaaatgaaaatgctaagatagaagtaataaaaaacaagatttttgaatttgggcaaaag
gtagggcagacaattatatttgtacgcacgagacatagtgcttcaatgttgcatcgatca
ctgtctcaagagggttatgagtgcacatcagttcaaggtgctctcagccaagaagacagg
gacaaaattataaaagaattcaaagatggattaaccaaagtcctcataaccactgatctg
ttggctcgtggttttgatcaaagacaggttaatttggttatcaactacgacctacctgta
aagcacaccaatccttctgagccagattgcgaactatacctccatagagttggaagaact
ggtcgatttggtagcaaaggtgctgtcttcaatttcctatgcactgatagggacaagtta
gtcatggagaaaattcagcagcactttcaacatcctatccctgagatttcggactggagg
agtgaagaagctttcgagtcagctctaaaggatgctggtttgctatga
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