Zingiber officinale (ginger): 122024562
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Entry
122024562 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122024562
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122024562
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122024562
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122024562
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
SR proteins
122024562
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
122024562
NCBI-ProteinID:
XP_042439154
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All DBs
Position
9B:complement(21264544..21269478)
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AA seq
237 aa
AA seq
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MADSPRGKYSRSPSPYRGRSKSRSPPRDLSRSRSRSPPLRNRARSPSGSRDRDEAVNTGN
TLYITGLSSRVTDRDLEHHFSREGKVVGCHLVVEPRTRASRGFAFVTMETAKDADRCIKY
LNQSILEGRYITVEKSRRGRARTPTPGKYLGVVSTRDGRRGERDRYYGGYSRDEYGGGYR
RSPRHSPYRGGRDYSPRRSPYYDNRYRRGRSRSFSPYGCRSPERASFGRRVNGYPPR
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctccacgcggaaagtactctcgttcgccatctccttacagaggtcgctcc
aaatcaagatctcctcctagggatttgtctcgctcaagatctcggtctcctccacttagg
aatcgagcaagatctccctctggaagtcgtgacagggatgaggcagtgaatactggaaat
actctttatataactggtctgtcatccagagttacagacagggatttggaacatcacttc
tctagggagggaaaggttgtgggatgtcacttagttgttgaacctcggacacgagcttct
cgtggttttgcatttgtgactatggagactgcaaaagatgctgatcgttgtatcaagtac
ctcaaccagtcaatcctcgaaggacggtacataacagtggagaagtcaaggagggggcga
gcacggacacctacacctggaaaataccttggcgtggttagcacgagagatggccgtaga
ggtgagcgagacagatactatggaggttacagccgtgatgagtatggcggtggttaccgt
agatctcctagacactctccttatcgaggtgggcgagattactcacctcggagatcacct
tattatgataacaggtacagaagaggacgatcaaggtcattttctccttatggttgtaga
agcccagagagagcatcctttgggcgtcgtgttaatggctatcctccacgttag
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