Zingiber officinale (ginger): 122027389
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Entry
122027389 CDS
T08725
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122027389
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122027389
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
122027389
NCBI-ProteinID:
XP_042442273
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All DBs
Position
10A:complement(87058854..87060017)
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AA seq
325 aa
AA seq
DB search
MHHNVGRGLRRYTVTDSSDDPVRPRPGTLRYGATVLPGKVWITFQGSMQIKLVRPLLVKN
FTTIDGRGADVHVAYGAGILLYQVSHVIIHGIQVHHIRAQAAGQVMDPLGELIEMVAEDG
DAIRLVSSSEVWIDHNTLYSCEDGLLDVTLGSNAVTVSNNWFREHDKVMLLGHNDDFVQD
KTMHVTVAFNRFGPNCNQRMPRVRYGYAHLVNNLYDGWLEYAVGGSTHPIILSQGNLYVA
SPGGNKKATLRMDAGGVRAMSASWKWRSVNDAFVNGAFFRQTGTGPVRPPYGRKQKFRVA
RAEAVRDLTRHAGALGCSAATGVRC
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaccacaacgtcggccgcggtctgcggcggtacacggttaccgactccagcgacgac
cccgtgcgtccccgccctggcacgctgcgctacggcgcgactgtgctcccggggaaggtg
tggatcactttccaagggagcatgcagatcaagctggtgaggcctcttctcgtcaagaac
ttcaccaccatcgacggccgcggtgccgacgtccacgttgcttacggcgccggaattctg
ctctaccaggtgagccatgtcatcattcacgggatccaagtccaccacatacgagcgcag
gcggcggggcaggtgatggacccgctcggcgagctgatagaaatggttgcggaggacggc
gacgcgatccggctggtgtcttcgtcagaggtttggatcgaccacaacacgctgtacagc
tgcgaggacgggctgctcgacgtgacgctcggctccaatgcagtgacggtgtccaacaac
tggttcagggagcacgacaaagtgatgctgctcggccacaacgacgacttcgtgcaggac
aagacgatgcacgtcaccgtcgccttcaatcgcttcggccccaattgcaaccagcggatg
cccagggtcaggtacggctacgcgcatttggtgaacaacttgtacgacgggtggctcgag
tacgccgtcggcggcagcacgcaccccatcatccttagccagggcaatctctacgtggcg
tcgccaggcggaaacaagaaggctactctccgaatggacgcaggcggcgtgcgagcgatg
tcggcgtcgtggaaatggcgctcggtcaatgacgccttcgtcaacggggcgttcttccgg
cagacgggcaccggcccggtacggccgccgtacgggcggaagcagaagtttcgggtggcg
cgggcggaggccgtgcgagacttgacgaggcacgccggcgcactcggatgcagcgccgcc
accggcgttcgatgctga
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