Zingiber officinale (ginger): 122056737
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Entry
122056737 CDS
T08725
Name
(RefSeq) probable pectate lyase 1 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122056737
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122056737
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Peptidase_C24
Motif
Other DBs
NCBI-GeneID:
122056737
NCBI-ProteinID:
XP_042474761
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Position
3B:88300123..88303084
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AA seq
414 aa
AA seq
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MAISRSSAFALLVFLLVLPTEHGLEDGVAVGAADDPELIASQVAMQIKNSTARLSEDDSS
TCGTGNPVDDCWRCDPKWHKHRKNLAECGIGFGRNAIGGRKGRLYHVTDPSDDDPVNPRP
GTLRYGVIQDEPLWIVFQSDMVITLSQELIVNSFKTIDGRGADVHIANGACITIQFVTNI
IIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWVDHNSLSNCTDGLID
AIIGSTSITISNNYFTNHNEVMLLGHSDSYKKDKVMQVTIAFNHFGEGLIQRMPRCRHGY
FHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPKNPFAKEVTKRVGTPKEEWKEWNWRS
EGDLLENGAYFTPSGAASTSSYSKASSLGAKSSSMIDSLTAGAGALKCRKGYAC
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttcgaggtcgtccgccttcgcgctcctcgtcttcttgctggttttaccaacg
gaacacggattggaagatggcgtcgccgtcggtgccgcggatgacccagaattgatagca
tcgcaggtggccatgcaaataaagaacagcacggcacggctctcagaggatgactcgtcg
acgtgcggaaccgggaaccccgtcgacgactgctggcggtgcgacccgaagtggcacaag
caccgcaagaacctggcggagtgcgggatcgggttcggccgcaacgcaatcggcggacgc
aagggtcgcttataccacgtgacggaccccagcgacgacgacccggtgaacccccggccg
ggcaccctccgctacggagtcatccaggatgagccgctgtggatcgtcttccagagcgac
atggtcataacgctgtcgcaggagctcatcgtgaacagcttcaagaccatcgacggccgc
ggcgccgacgtccacatcgccaacggcgcctgcatcaccatccagttcgtcaccaacatc
atcatccacggcctccacatccacgactgcaagcccaccggcaacgccatggtccgcagc
tccccctcccactacggctggcgcaccattgccgacggcgacggcatctcaatcttcggc
tccagccacatctgggtcgaccataactccctctccaactgcaccgacggcctcatcgat
gccatcataggctccacctcaatcaccatctccaacaattacttcaccaaccacaacgag
gtgatgcttttgggccacagcgattcgtataaaaaagacaaggtaatgcaggtgaccatc
gcattcaaccacttcggtgaagggctaattcaaagaatgccgaggtgcaggcatggttac
ttccatgtggtgaacaacgactacactcactgggagatgtacgccattgggggaagtgcg
aaccctactataaacagtcaaggcaacagatatctcgcacctaaaaatcccttcgccaaa
gaggtgaccaagagggtgggaactccgaaagaagagtggaaggagtggaattggagatca
gaaggggacctcctagagaacggggcctacttcaccccgtcaggagctgcttccacttcg
agctactccaaggcctcgagcctcggggccaagtcttcctccatgatcgattccctcacc
gcaggggcaggtgccctcaagtgccgtaaggggtacgcctgctag
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