KEGG   Zygosaccharomyces rouxii: ZYRO0B03762g
Entry
ZYRO0B03762g      CDS       T01118                                 
Name
(RefSeq) U6 snRNA complex subunit LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
zro  Zygosaccharomyces rouxii
Pathway
zro03018  RNA degradation
zro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ZYRO0B03762g
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ZYRO0B03762g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zro03019]
    ZYRO0B03762g
   03041 Spliceosome [BR:zro03041]
    ZYRO0B03762g
Messenger RNA biogenesis [BR:zro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     ZYRO0B03762g
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     ZYRO0B03762g
Spliceosome [BR:zro03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    ZYRO0B03762g
SSDB
Motif
Pfam: LSM SM-ATX Adeno_E4_34 MyTH4
Other DBs
NCBI-GeneID: 8202259
NCBI-ProteinID: XP_002495119
UniProt: C5DQX5
LinkDB
Position
B:314249..314770
AA seq 173 aa
MLPLYLLTNAKGQQMSIELKNGEIVEGELINVDNWMNVTLSNASQFDNIGTTVSVGPSKE
VVKAKEVYIRGTYIKYIRLQDEIIDQVKQQINNNSNSNNNYGSGSYRGRRSGFNSPGGGS
ANYNRRNNPNAGGRRNFNNNSNGQRRPFNNQTRPSTNGMGGYVQQHQQRDVEF
NT seq 522 nt   +upstreamnt  +downstreamnt
atgttaccgctttatcttctaactaatgcaaagggtcaacagatgagtatagaattgaaa
aatggtgaaatcgtcgagggtgaattgattaatgtcgataactggatgaatgttacttta
tcgaatgcctcacaatttgataatatcggtactactgtaagtgttggcccatccaaagaa
gttgtaaaagcaaaagaggtgtacattagaggtacctatatcaaatatatcagattacaa
gatgaaataattgaccaggtaaagcaacagatcaacaacaatagtaattcgaataataac
tatggtagtggaagctatagaggtagaagaagcggatttaactctccaggcggtggtagc
gcgaactataacagaagaaataatccaaatgctggtggtagaagaaatttcaacaataat
tcaaatggacaacgtcgaccatttaataatcaaacaagaccaagtacaaatggtatggga
ggttatgtgcaacagcatcaacaaagagatgtggaattttga

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