Zygosaccharomyces rouxii: ZYRO0D00836g
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Entry
ZYRO0D00836g CDS
T01118
Name
(RefSeq) SKI complex subunit tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
zro
Zygosaccharomyces rouxii
Pathway
zro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZYRO0D00836g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zro03019
]
ZYRO0D00836g
Messenger RNA biogenesis [BR:
zro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
ZYRO0D00836g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_22
TPR_2
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_1
TPR_12
TPR_11
ANAPC3
TPR_8
TPR_6
TPR_17
ARM_TT21_N
Alkyl_sulf_dimr
ARM_TT21_C
TPR_7
TPR_MalT
SieB
HrpB1_HrpK
DUF348
ChAPs
Motif
Other DBs
NCBI-GeneID:
8203715
NCBI-ProteinID:
XP_002496470
UniProt:
C5DUR8
LinkDB
All DBs
Position
D:complement(62421..66626)
Genome browser
AA seq
1401 aa
AA seq
DB search
MSNVKDLLKEAKVELSREDYVEAVKICKKVLNADKENYFAHVFMGKSYSNMDNRIQDAID
HYNKAIELLPEELLAWKGLYLVFKESDVIPSIVNFDTYFEFCGGYARALANKGVSQVDLI
HDIRVFRKTHTDCEESFLRHMVPGTPTAEQLARHLISAQDAISGLIRILNSKQQDQISKH
VSRERLKLSANDPSYQGKINTLSWEVYKDSELDDLYNQLINITDDDEQRSNLEAQWLEYR
LKVLKSTPQNLKGSSFEKLKRMTEDMVLVDHASIRPWKLYFEWQDYENLDSMDMDLIMKF
FRKFPIEPLAVILYAWVCSNFSQYDTKKLQTEAEKKSSAQDETNELNEIDESEKRALKEM
MEAENDTTTMAEDEVMTALMDNITRAQSSALAHRIVSQYYIYSKENEAALTYVKKGASLV
AYEVRDYGAHLVNSKREFTLKLATLYIYIDSPKNHSLALSLFEKVLKENPENTQAKMGKG
LIFMERQNYTDAKLLLSEVISQYADNLEFLSELAWCEACLGNLDESIGILNKVLTSLQGT
DLRTSAFRALNIWRLAKTHVLKQEKENPEDQKYVKIAFRLLIQSIKVLDTYAPNYSALGD
IYNRFYKDGVRAFKCFYKAFELDDSDLMAARYMSENYTELGNWQAARVVCERLVGSERAK
RALQTVNWPFRVIGIAYLEGQQEANSIEWFQSALRVNQSDVEAWVGLGQAYYACGRIEAS
IKVFEKAIELDSEHHYAKYLKAQSLSLMGQFDEAIDILNALTEILPQETIFQMTKATILV
NYAHDLYSQGFLMKSVATAADAIGIMQFIATELSFYGQALWIGILKALKLFIWVESKVGD
LPVEALISTFGAVSTSNQVLNSIDELDGITLDNILSEIEDSSISIACKLLILSAKYAVAT
TTYEALTRTVRSSLWYNIGTSELSAYHILKNDKFRDSAIASFKKSIQYQSNTVESWMGLG
IATMDVNYRVAQHCFIKCTAMAPKEGSVWFDLALLALQNNDAEFALTVLNKSQSIAPQDS
SPWLGNALILEKQGKIKESCRMFAHAFILSNGRSKAAQLYFAKSVLQNRIGYSGDERDIS
AVEELSAVVHGLDQYFKKSPSDSFALQCALLALERLRIFPYATGVADRLVRLIESRFEKG
QDNDELYNFAVVKAQIARVQLGLGQYDAVIENADLSRSILVDFENENNTSIFVSNHICLA
LAYFFSDNFDETLTHLEELLRLSKESKHLVILISKLLYSVGSEDTKTIAIEELTECLSNK
NGDLILCLTLAAIALLEGKREDMSIVFGRLRETPLEDVIADEHRDLPYLMDLLYKKLSHG
KSTGNGVSWQRSAFFFMNDNKVWTDLSKKIQQRVASDGQNKVTSRQLSDCYWSQKNLKSI
QRSIFLCPDNASAVSALNQCF
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgtcaaagatctgcttaaggaggccaaggtcgaattgtctagagaggattat
gttgaagctgtaaagatttgcaagaaagttctgaatgctgacaaggagaattactttgcc
catgtgttcatgggtaagtcatactctaacatggataacaggatccaagatgcgattgat
cactataacaaagctatagagttgctacctgaagaattactggcgtggaaaggtctttat
cttgttttcaaagaaagtgatgtaataccaagtattgtaaattttgacacatatttcgaa
ttctgtggtgggtatgcaagagcattagccaataaaggtgtttcacaagtggatttaatt
catgatatcagagtttttcgtaagacccatactgattgtgaagaatcgttccttagacac
atggtaccaggaacaccaactgcggaacaactagcacgtcatttgatttcagcacaagat
gcaatttcaggattaattagaatcttaaactccaagcaacaagatcaaatttctaagcat
gtgagccgtgaaagattaaaattaagtgcaaatgatccaagttatcagggaaagattaat
acgctgtcttgggaagtttacaaagattcagaattagacgatttgtacaaccaattgatc
aatatcacagatgatgatgaacagagaagtaatttggaagctcaatggttagaatataga
ctcaaagtattgaaatctactccacaaaatctcaagggctcatcttttgaaaaattgaaa
aggatgaccgaagatatggttctggtagaccatgcatccataagaccatggaaattgtat
tttgaatggcaggattacgaaaatttagattcaatggatatggatctcattatgaagttc
tttagaaaattccctatagaaccactagcggttatcctatacgcttgggtctgctctaat
ttctcacaatacgatactaaaaaattgcaaacagaagcagagaagaaatccagcgctcag
gatgaaactaatgaattgaatgagatagatgaaagtgagaagcgtgctctcaaggaaatg
atggaagcagaaaatgataccaccacaatggctgaagatgaggttatgactgcactgatg
gataacatcacaagggctcagagtagtgcattagctcaccgaatagtttcacagtattac
atatattctaaggaaaatgaagctgctcttacttacgtgaagaaaggtgcttccttagtg
gcatatgaagttcgggattatggtgctcatctagtgaattctaaaagagaattcacattg
aaattggcaacgctttacatctatattgattctcctaagaaccattccctagcgctaagc
ttgtttgagaaagtattaaaggaaaacccggaaaacacacaagcgaaaatgggaaagggt
ctaattttcatggaaagacagaattatacagatgcaaaactcttactttcagaagtcatt
agccaatatgcagataatttggaatttctttcagagttagcgtggtgtgaagcttgtttg
ggaaatctagacgagtccattggtatcttgaacaaagttttaacttctctacaagggacc
gatttaagaacttctgcctttagggccttaaacatttggagattggcgaagactcatgtg
ttgaagcaagaaaaggaaaaccctgaagaccaaaaatacgtcaaaattgcctttagacta
ttgattcaatcgatcaaagtactagatacatatgctccaaattattccgcattaggtgat
atctacaacagattttacaaagatggagtaagagcttttaaatgtttctataaggcattt
gaacttgatgattcggatttaatggctgctagatacatgtctgaaaactacacagagttg
ggtaattggcaagctgctcgtgtagtatgcgaaagactagtaggatcagaaagagccaag
agagctctgcaaacggtcaattggccatttagagtcataggtatcgcatacctagaaggc
caacaggaggcaaattctattgaatggttccaatccgccttaagagttaatcaatctgat
gtagaagcctgggttggattgggacaagcctactacgcttgtggtcgtatcgaggcttcc
ataaaagtattcgaaaaagctattgaattagattcagagcatcattacgccaaatattta
aaggcacaatcactttccctaatgggtcaattcgatgaagcaatcgacattttaaatgca
ttaaccgaaattttacctcaagaaacgatcttccaaatgaccaaggcaaccattttggtg
aactatgctcatgatttgtattctcaagggtttttaatgaaatcagtagcaactgccgct
gatgcaattggtattatgcaatttattgcaaccgagttatctttctatggccaagccttg
tggattggaatattaaaggctttgaaactattcatttgggtggaatctaaagttggtgat
cttccagtagaagctttaatctctacctttggtgccgtgtctacttcgaatcaagtttta
aattccattgatgagctggatggtatcacactagacaacattttgtcagaaattgaagac
agtagtatatccatcgcttgcaaactattgatcttatcagcgaaatatgctgtcgcaaca
actacttatgaagcattgacaagaactgtgagatcttctctttggtataacatagggaca
tctgaactgtctgcttaccacattttgaagaatgacaaatttagagattctgcaatcgca
tctttcaaaaaatctattcaataccaatctaatacagtcgagtcctggatgggattgggt
atcgccacgatggatgtcaactatcgagttgctcaacactgtttcattaaatgtaccgca
atggcgcctaaggagggttcagtatggttcgatctggcattgctggcactgcaaaataat
gatgcagaattcgctctaactgtgctaaataagtcacagagcattgcgcctcaagattct
tctccatggctaggtaatgccttgatcttggagaaacagggcaagataaaggaaagttgt
agaatgttcgcacatgcgtttattttgtccaatggtagatccaaggcagctcaactctat
tttgctaaatcagtacttcaaaatcgcattggttattcgggtgatgaaagagatatttcc
gcagtggaggaactgtcagcggtggttcacggtctggaccaatactttaagaaatctcca
tccgactcctttgctcttcaatgcgcactactagctttggaaagattacgtattttccct
tacgcaactggtgttgctgacagactggttcgtttaatcgaatcccgtttcgagaagggt
caagataatgatgagctttacaatttcgcggtagtcaaagcgcaaattgctcgtgttcaa
ctgggtctaggtcaatacgatgccgtgattgaaaatgcagacttatcgagaagcattttg
gtggattttgagaacgaaaataacacttcgatttttgtctctaatcatatctgtctagca
ttagcatacttcttctcagataattttgatgagactttaacccatttggaggagttgtta
agattatctaaggaatccaaacatctcgttattttgatctctaagcttctgtactcagtt
ggttctgaggatacgaagacaattgcgattgaagaattaactgaatgtctctccaataaa
aatggtgacctgatactatgcttgacgctagcggcaatagcattacttgagggaaaacgc
gaagatatgtccatcgtcttcggcagactccgtgaaacgccattagaagatgtaatagcg
gatgaacaccgtgatctaccctatttgatggatcttctatacaaaaagctgtctcatggt
aaatctacaggtaatggcgtatcatggcagagatctgcgttctttttcatgaacgataac
aaagtatggaccgatttgagcaagaaaattcaacaaagagttgcctcagatggccaaaac
aaagtaacttctcgccaattgagtgattgttattggtcacaaaagaatttgaaaagcata
caaaggagtattttcctttgccctgataatgcatctgctgtgtctgcactcaaccagtgc
ttttaa
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