Zootoca vivipara (common lizard): 118082902
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Entry
118082902 CDS
T07275
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118082902 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118082902 (PNLDC1)
Enzymes [BR:
zvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118082902 (PNLDC1)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118082902 (PNLDC1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
118082902
NCBI-ProteinID:
XP_034966631
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All DBs
Position
LG3:complement(50344491..50362273)
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AA seq
527 aa
AA seq
DB search
MDVGAGEFEEKLPELQELILRCDFVGIDMEFTGLHSTFPPSNQHSLFDSPAERYQKARKS
VQQFTVSQLGLSIFSNEKSKYVVHSYNFFLLPMTFGQMDSEVCFQTSSIQFLSHYGFDYN
KFLKDGIPYMNEAQEKKLQQQLLPGSWMVHSAFEKNKLKKVIDEVTCWVSSAEVKDSMVL
RDIYGFQVFEIQLILRRAIQDIWTIPLEGQELMVKKISPQHRWQLENTSYDSCRRERILF
SARGFTNLFHTLVKAKKPLVGHNMLMDLLHLHENFYKPLPENYEEFKKNIHALFPVVMDT
KNIVKATWKEFQFPQADNLLEVYKVLNSSDMNPTNQPCPEIFHASDCLRYATKESPHEAA
YDAFLCGSVLLKVAHLLLDRMSCDPTRTTPSFSQYLDVLAAYVNQVNVIRAGVRKINFSG
MDDPIKLPPRLIINVRGWPGVDEEQIYREFKIFCRFDVRRLKRNQFLLLSNNFKNVRMVL
REYKAHPNVQISPYHHWRHSPQVNFFLQICGVVTSWSLLAFFLGGSS
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggagccggggagtttgaggagaagttgccggagctgcaggagctcatcctc
cgctgcgactttgtcggcattgacatggagttcacaggtttgcattctacctttccaccc
agtaatcagcacagcctctttgattcaccggctgagcgctatcaaaaagccagaaagagc
gtccagcaatttacagtgagtcagcttggtttgtcaatattttccaatgaaaaatccaag
tatgtggttcattcctataacttttttctccttcccatgacatttggccaaatggattct
gaggtctgtttccaaacatctagcattcagttcttgtctcactatggttttgactacaac
aagtttcttaaagatggaatcccatacatgaatgaagcacaagagaagaaacttcagcaa
caacttttgcccgggagctggatggtccacagtgcctttgaaaagaacaagctgaaaaaa
gtgattgatgaagtaacttgctgggtgtcatcagcagaagtgaaagattctatggtactg
cgcgatatatatggcttccaggtgtttgaaatacagctgattctaagacgagctattcaa
gatatttggacgattcctttagaaggtcaagaattgatggtgaagaagataagtccacag
catcgctggcagctggaaaatacttcttacgattcttgtcggagagagcgaattctgttc
tctgcaaggggtttcaccaaccttttccacacactagttaaagcaaagaagccactggtg
ggacacaatatgctgatggatcttctgcatctgcatgagaacttttacaagcccctccct
gaaaactacgaggaatttaaaaagaacatacatgccttgtttcctgttgtcatggacaca
aagaacatagtaaaggccacctggaaggagttccagtttcctcaagctgataatcttttg
gaggtttataaagtactgaacagcagtgacatgaatcccacaaaccagccttgtccagag
atctttcatgcaagcgactgcctcagatacgctacaaaggagtctccgcacgaggcggcc
tatgatgcatttctctgcggatcagttcttctgaaagtagcccatttgcttcttgacaga
atgtcttgtgatccaacaaggactactccctcattttctcagtaccttgatgtattggct
gcatatgtgaatcaagtgaacgttatccgagctggtgttcggaaaataaatttttccggt
atggatgaccctataaagcttccaccacgccttatcattaatgtgcgaggatggcctggg
gttgatgaagagcagatctatcgggagtttaaaatcttctgcagattcgatgtgcgacgg
ctaaagaggaaccagtttctcttactctccaataattttaaaaatgtcagaatggttttg
agagaatataaagctcatcccaacgtgcagatttccccataccaccactggaggcattct
ccgcaagtgaatttcttccttcaaatttgtggtgttgtgacctcttggtctttgctggca
ttcttccttggaggatcttcataa
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