{ "name":"aof03019", "children":[ { "name":"Eukaryotic type", "children":[ { "name":"mRNA processing factors", "children":[ { "name":"5' end processing", "children":[ { "name":"Capping factors", "children":[ { "name":"109826882 mRNA cap guanine-N7 methyltransferase 2\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"109845149 mRNA cap guanine-N7 methyltransferase 1\tK00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]" }, { "name":"109832843 mRNA-capping enzyme isoform X1\tK13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]" }, { "name":"109848719 cyclin-dependent kinase D-1-like\tK02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]" } ] }, { "name":"Cap binding complex", "children":[ { "name":"109842913 nuclear cap-binding protein subunit 1-like\tK12882 NCBP1; nuclear cap-binding protein subunit 1" }, { "name":"109848472 nuclear cap-binding protein subunit 1-like\tK12882 NCBP1; nuclear cap-binding protein subunit 1" }, { "name":"109851479 nuclear cap-binding protein subunit 2\tK12883 NCBP2; nuclear cap-binding protein subunit 2" } ] } ] }, { "name":"3' end processing", "children":[ { "name":"Pre-mRNA cleavage factor Im (CFIm)", "children":[ { "name":"109828072 pre-mRNA cleavage factor Im 25 kDa subunit 1\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"109836909 pre-mRNA cleavage factor Im 25 kDa subunit 2-like\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"109849657 pre-mRNA cleavage factor Im 25 kDa subunit 2\tK14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5" }, { "name":"109823415 glycine-rich RNA-binding protein 3, mitochondrial-like\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" }, { "name":"109830474 LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 3, mitochondrial\tK14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6\/7" } ] }, { "name":"Pre-mRNA cleavage factor IIm (CFIIm)", "children":[ { "name":"109828019 protein CLP1 homolog\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"109845195 protein CLP1 homolog\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"109847808 protein CLP1 homolog\tK14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]" }, { "name":"109836730 polyadenylation and cleavage factor homolog 4\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" }, { "name":"109844760 LOW QUALITY PROTEIN: uncharacterized protein LOC109844760\tK14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11" } ] }, { "name":"Cleavage and polyadenylation specificity factor (CPSF) complex", "children":[ { "name":"109837079 cleavage and polyadenylation specificity factor subunit 1 isoform X1\tK14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1" }, { "name":"109848634 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"109825379 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"109830694 putative uncharacterized protein DDB_G0286901 isoform X1\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"109844492 zinc finger CCCH domain-containing protein 45\tK14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4" }, { "name":"109844014 flowering time control protein FY\tK15542 PFS2; polyadenylation factor subunit 2" }, { "name":"109825589 WD repeat-containing protein 82-B isoform X1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"109840864 WD repeat-containing protein 82 isoform X1\tK14962 WDR82; COMPASS component SWD2" }, { "name":"109819716 serine\/threonine-protein phosphatase PP1 isozyme 2-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109825741 serine\/threonine-protein phosphatase PP1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109827027 serine\/threonine-protein phosphatase PP1(5.9)-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109829821 serine\/threonine-protein phosphatase PP1-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109831088 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109831834 serine\/threonine-protein phosphatase PP1-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109837514 serine\/threonine-protein phosphatase PP1 isozyme 3-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109842895 LOW QUALITY PROTEIN: serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109845004 serine\/threonine-protein phosphatase PP1-like isoform X1\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109849317 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109851294 serine\/threonine-protein phosphatase PP1-like\tK06269 PPP1C; serine\/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]" }, { "name":"109821896 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109823878 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109824081 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109832064 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109835085 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109835866 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109843729 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109844869 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109846959 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109846961 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" }, { "name":"109848254 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like\tK15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]" } ] }, { "name":"Cleavage stimulation factor (CSTF) complex", "children":[ { "name":"109844151 cleavage stimulation factor subunit 50\tK14406 CSTF1; cleavage stimulation factor subunit 1" }, { "name":"109824329 cleavage stimulating factor 64-like isoform X1\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109824425 cleavage stimulation factor subunit 2-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109830329 cleavage stimulating factor 64-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109842092 cleavage stimulation factor subunit 2 tau variant-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109827326 cleavage stimulation factor subunit 77\tK14408 CSTF3; cleavage stimulation factor subunit 3" }, { "name":"109846606 uncharacterized protein LOC109846606\tK06100 SYMPK; symplekin" }, { "name":"109850024 LOW QUALITY PROTEIN: uncharacterized protein LOC109850024\tK06100 SYMPK; symplekin" } ] }, { "name":"U7-dependent histone pre-mRNA processing factors", "children":[ { "name":"109825965 small nuclear ribonucleoprotein SmD3b-like\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"109837287 small nuclear ribonucleoprotein SmD3b-like\tK11088 SNRPD3; small nuclear ribonucleoprotein D3" }, { "name":"109825652 small nuclear ribonucleoprotein E-like\tK11097 SNRPE; small nuclear ribonucleoprotein E" }, { "name":"109841329 probable small nuclear ribonucleoprotein F isoform X1\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"109845246 probable small nuclear ribonucleoprotein F\tK11098 SNRPF; small nuclear ribonucleoprotein F" }, { "name":"109822136 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"109844805 probable small nuclear ribonucleoprotein G\tK11099 SNRPG; small nuclear ribonucleoprotein G" }, { "name":"109848634 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2\tK14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2" }, { "name":"109825379 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I\tK14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]" }, { "name":"109824329 cleavage stimulating factor 64-like isoform X1\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109824425 cleavage stimulation factor subunit 2-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109830329 cleavage stimulating factor 64-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109842092 cleavage stimulation factor subunit 2 tau variant-like\tK14407 CSTF2; cleavage stimulation factor subunit 2" }, { "name":"109846606 uncharacterized protein LOC109846606\tK06100 SYMPK; symplekin" }, { "name":"109850024 LOW QUALITY PROTEIN: uncharacterized protein LOC109850024\tK06100 SYMPK; symplekin" } ] }, { "name":"DRB sensitivity inducing factor (DSIF) complex", "children":[ { "name":"109833946 transcription elongation factor SPT4 homolog 2-like\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"109850911 transcription elongation factor SPT4 homolog 2-like\tK15171 SUPT4H1; transcription elongation factor SPT4" }, { "name":"109843714 putative transcription elongation factor SPT5 homolog 1\tK15172 SUPT5H; transcription elongation factor SPT5" } ] }, { "name":"N6-methyltransferase complex", "children":[ { "name":"109839565 LOW QUALITY PROTEIN: probable N6-adenosine-methyltransferase MT-A70-like\tK05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]" }, { "name":"109846976 methyltransferase-like protein 1\tK23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit" }, { "name":"109819811 methyltransferase-like protein 16 homolog isoform X1\tK11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]" }, { "name":"109828946 FKBP12-interacting protein of 37 kDa\tK22824 WTAP; pre-mRNA-splicing regulator WTAP" }, { "name":"109840745 zinc finger CCCH domain-containing protein 13-like\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"109847463 uncharacterized protein LOC109847463\tK22909 ZC3H13; zinc finger CCCH domain-containing protein 13" }, { "name":"109839410 E3 ubiquitin-protein ligase ZNF645\tK15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]" } ] }, { "name":"Poly(A) addition factors", "children":[ { "name":"109829036 nuclear poly(A) polymerase 1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"109840624 nuclear poly(A) polymerase 4-like\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" }, { "name":"109842716 nuclear poly(A) polymerase 3 isoform X1\tK14376 PAP; poly(A) polymerase [EC:2.7.7.19]" } ] }, { "name":"Negative regulators of mRNA 3' end processing", "children":[ { "name":"109836394 BRCA1-associated RING domain protein 1-like isoform X1\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"109848972 protein BREAST CANCER SUSCEPTIBILITY 1 homolog\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"109850440 BRCA1-associated RING domain protein 1-like isoform X1\tK10683 BARD1; BRCA1-associated RING domain protein 1" }, { "name":"109846430 zinc finger CCCH domain-containing protein 27\tK13192 RBM26; RNA-binding protein 26" }, { "name":"109823284 RNA demethylase ALKBH5\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"109825651 uncharacterized protein LOC109825651\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" }, { "name":"109846851 uncharacterized protein LOC109846851\tK10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]" } ] } ] }, { "name":"Other processing factors", "children":[ { "name":"109819652 KIN17-like protein\tK13102 KIN; DNA\/RNA-binding protein KIN17" }, { "name":"109841148 methyltransferase-like protein 22 isoform X1\tK23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]" }, { "name":"109840395 serrate RNA effector molecule\tK27103 SRRT; serrate RNA effector molecule" } ] } ] }, { "name":"mRNA surveillance and transport factors", "children":[ { "name":"Transport factors", "children":[ { "name":"EJC complex", "children":[ { "name":"109819685 RNA-binding protein 8A-like isoform X1\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"109830725 RNA-binding protein 8A-A-like\tK12876 RBM8A; RNA-binding protein 8A" }, { "name":"109825961 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"109839304 protein mago nashi homolog\tK12877 MAGOH; protein mago nashi" }, { "name":"109829895 THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"109844249 THO complex subunit 4D-like isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"109840815 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 56-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"109847191 DEAD-box ATP-dependent RNA helicase 56-like\tK12812 DDX39B; ATP-dependent RNA helicase UAP56\/SUB2 [EC:5.6.2.7]" }, { "name":"109820115 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"109821514 histone deacetylase complex subunit SAP18\tK14324 SAP18; histone deacetylase complex subunit SAP18" }, { "name":"109833710 pinin-like isoform X1\tK13114 PNN; pinin" }, { "name":"109847954 pinin-like\tK13114 PNN; pinin" }, { "name":"109832652 apoptotic chromatin condensation inducer in the nucleus\tK12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus" }, { "name":"109823744 serine\/arginine-rich splicing factor SR45\tK14325 RNPS1; RNA-binding protein with serine-rich domain 1" }, { "name":"109843431 LOW QUALITY PROTEIN: serine\/arginine repetitive matrix protein 1-like\tK13171 SRRM1; serine\/arginine repetitive matrix protein 1" } ] }, { "name":"TREX complex", "children":[ { "name":"109825643 THO complex subunit 1 isoform X1\tK12878 THOC1; THO complex subunit 1" }, { "name":"109833791 LOW QUALITY PROTEIN: THO complex subunit 2\tK12879 THOC2; THO complex subunit 2" }, { "name":"109820887 THO complex subunit 3\tK12880 THOC3; THO complex subunit 3" }, { "name":"109829895 THO complex subunit 4B-like\tK12881 THOC4; THO complex subunit 4" }, { "name":"109844249 THO complex subunit 4D-like isoform X1\tK12881 THOC4; THO complex subunit 4" }, { "name":"109841399 THO complex subunit 5B-like\tK13174 THOC5; THO complex subunit 5" }, { "name":"109851470 THO complex subunit 5B\tK13174 THOC5; THO complex subunit 5" }, { "name":"109840058 THO complex subunit 6 isoform X1\tK13175 THOC6; THO complex subunit 6" }, { "name":"109849473 THO complex subunit 7B-like\tK13176 THOC7; THO complex subunit 7" } ] }, { "name":"TREX-2 complex", "children":[ { "name":"109835567 enhanced ethylene response protein 5\tK23801 PCID2; nuclear mRNA export protein PCID2\/THP1" }, { "name":"109822625 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"109844468 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like\tK10881 SHFM1; 26 proteasome complex subunit DSS1" }, { "name":"109825925 transcription and mRNA export factor SUS1\tK11368 ENY2; enhancer of yellow 2 transcription factor" }, { "name":"109843064 SAC3 family protein C isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" }, { "name":"109849175 SAC3 family protein B isoform X1\tK23719 SAC3; nuclear mRNA export protein SAC3" } ] }, { "name":"Nuclear pore complex", "children":[ { "name":"109835617 nuclear-pore anchor\tK09291 TPR; nucleoprotein TPR" }, { "name":"109832647 LOW QUALITY PROTEIN: protein RAE1-like\tK14298 RAE1; mRNA export factor" }, { "name":"109828833 protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"109840843 protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"109847610 LOW QUALITY PROTEIN: protein transport protein SEC13 homolog B-like\tK14004 SEC13; protein transport protein SEC13" }, { "name":"109840576 nuclear pore complex protein NUP85\tK14304 NUP85; nuclear pore complex protein Nup85" }, { "name":"109838093 uncharacterized protein LOC109838093 isoform X1\tK14295 NUP50; nuclear pore complex protein Nup50" }, { "name":"109823986 nuclear pore complex protein NUP54\tK14308 NUP54; nuclear pore complex protein Nup54" }, { "name":"109836232 nuclear pore complex protein NUP62\tK14306 NUP62; nuclear pore complex protein Nup62" }, { "name":"109831087 LOW QUALITY PROTEIN: nuclear pore complex protein NUP88\tK14318 NUP88; nuclear pore complex protein Nup88" }, { "name":"109834454 nuclear pore complex protein NUP93A-like\tK14309 NUP93; nuclear pore complex protein Nup93" }, { "name":"109827688 nuclear pore complex protein NUP98A-like\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"109831950 nuclear pore complex protein NUP98A isoform X1\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"109832659 LOW QUALITY PROTEIN: nuclear pore complex protein NUP96\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"109848296 nuclear pore complex protein NUP98A-like\tK14297 NUP98; nuclear pore complex protein Nup98-Nup96" }, { "name":"109831744 nuclear pore complex protein NUP107 isoform X1\tK14301 NUP107; nuclear pore complex protein Nup107" }, { "name":"109845286 nuclear pore complex protein NUP133\tK14300 NUP133; nuclear pore complex protein Nup133" }, { "name":"109836876 uncharacterized protein LOC109836876 isoform X1\tK14311 NUP188; nuclear pore complex protein Nup188" }, { "name":"109833783 LOW QUALITY PROTEIN: nuclear pore complex protein NUP155\tK14312 NUP155; nuclear pore complex protein Nup155" }, { "name":"109841624 LOW QUALITY PROTEIN: nuclear pore complex protein NUP160\tK14303 NUP160; nuclear pore complex protein Nup160" }, { "name":"109844584 nuclear pore complex protein NUP35-like\tK14313 NUP35; nuclear pore complex protein Nup53" }, { "name":"109828784 nuclear pore complex protein NUP205 isoform X1\tK14310 NUP205; nuclear pore complex protein Nup205" }, { "name":"109825712 nuclear pore complex protein GP210\tK14314 NUP210; nuclear pore complex protein Nup210" }, { "name":"109850176 nuclear pore complex protein NUP214\tK14317 NUP214; nuclear pore complex protein Nup214" }, { "name":"109838973 nuclear pore complex protein NUP58-like\tK14307 NUPL1; nucleoporin p58\/p45" }, { "name":"109842820 zinc finger CCCH domain-containing protein 46 isoform X1\tK14321 NUPL2; nucleoporin-like protein 2" }, { "name":"109836676 uncharacterized protein LOC109836676\tK14315 NDC1; nucleoporin NDC1" }, { "name":"109827897 protein SEH1 isoform X1\tK14299 SEH1; nucleoporin SEH1" }, { "name":"109831314 aladin isoform X1\tK14320 AAAS; aladin" }, { "name":"109829176 protein GLE1 isoform X1\tK18723 GLE1; nucleoporin GLE1" } ] }, { "name":"Ran-mediated transport factors", "children":[ { "name":"109841243 GTP-binding nuclear protein Ran-2\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"109846465 GTP-binding nuclear protein Ran-2-like\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"109846466 GTP-binding nuclear protein Ran1B\tK07936 RAN; GTP-binding nuclear protein Ran" }, { "name":"109825693 plant UBX domain-containing protein 10-like\tK18726 FAF2; FAS-associated factor 2" }, { "name":"109827686 plant UBX domain-containing protein 10-like\tK18726 FAF2; FAS-associated factor 2" }, { "name":"109848661 plant UBX domain-containing protein 10-like isoform X1\tK18726 FAF2; FAS-associated factor 2" }, { "name":"109825863 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"109830711 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"109846934 cell division cycle protein 48 homolog\tK13525 VCP; transitional endoplasmic reticulum ATPase" }, { "name":"109850637 protein N-lysine methyltransferase METTL21A isoform X1\tK21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]" }, { "name":"109844198 protein EXPORTIN 1A\tK14290 XPO1; exportin-1" }, { "name":"109827136 LOW QUALITY PROTEIN: exportin-7\tK18460 XPO7; exportin-7" }, { "name":"109846581 RAN GTPase-activating protein 1\tK14319 RANGAP1; Ran GTPase-activating protein 1" }, { "name":"109824367 LOW QUALITY PROTEIN: nuclear transport factor 2-like\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"109830598 LOW QUALITY PROTEIN: nuclear transport factor 2-like\tK28773 NUTF2; nuclear transport factor 2" }, { "name":"109833331 nuclear transport factor 2-like\tK28773 NUTF2; nuclear transport factor 2" } ] }, { "name":"eIF4F and regulatory proteins", "children":[ { "name":"109820944 eukaryotic translation initiation factor NCBP-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109824080 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109825067 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109842561 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109828423 eukaryotic initiation factor 4A-8\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109840346 eukaryotic initiation factor 4A-8-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109844273 eukaryotic initiation factor 4A-8-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109849775 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109819576 eukaryotic translation initiation factor 4G\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109827130 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109838993 eukaryotic translation initiation factor 4G-like isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109841273 LOW QUALITY PROTEIN: eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109844964 LOW QUALITY PROTEIN: eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109826861 eukaryotic translation initiation factor 4B3-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"109837629 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"109836461 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"109828776 DEAD-box ATP-dependent RNA helicase 52C-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109847974 DEAD-box ATP-dependent RNA helicase 52B-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109851275 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109835071 uncharacterized protein LOC109835071\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"109837327 LOW QUALITY PROTEIN: uncharacterized protein LOC109837327\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"109820156 polyadenylate-binding protein 7-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109820267 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109821280 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109827895 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109834066 LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109835606 LOW QUALITY PROTEIN: polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109841124 polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109846496 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109851034 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"109822941 malignant T-cell-amplified sequence 1 homolog\tK07575 MCTS; malignant T-cell-amplified sequence" }, { "name":"109831839 malignant T-cell-amplified sequence 1 homolog\tK07575 MCTS; malignant T-cell-amplified sequence" }, { "name":"109828432 translation machinery-associated protein 22\tK24272 DENR; density-regulated protein" } ] }, { "name":"APOBEC1-ACF complex" }, { "name":"Other transport factors", "children":[ { "name":"109833694 partner of Y14 and mago-like isoform X1\tK14294 WIBG; partner of Y14 and mago" }, { "name":"109847933 uncharacterized protein LOC109847933\tK14294 WIBG; partner of Y14 and mago" }, { "name":"109824418 heterogeneous nuclear ribonucleoprotein 1-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109828769 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109829937 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109832502 LOW QUALITY PROTEIN: UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109832662 UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109834132 LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 4, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109834360 glycine-rich RNA-binding protein 2, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109835541 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109838837 heterogeneous nuclear ribonucleoprotein A1, A2\/B1 homolog\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109842377 LOW QUALITY PROTEIN: UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109819712 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109834442 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109847305 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109848516 heterogeneous nuclear ribonucleoprotein 1\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109848994 RNA-binding protein Musashi homolog 2-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109849399 heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109851046 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein 1-like\tK14411 MSI; RNA-binding protein Musashi" }, { "name":"109824043 HBS1-like protein\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"109850182 HBS1-like protein isoform X1\tK14416 HBS1; elongation factor 1 alpha-like protein" }, { "name":"109825360 protein PELOTA 1\tK06965 PELO; protein pelota" }, { "name":"109819391 polyadenylate-binding protein 2-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109820770 polyadenylate-binding protein 2-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109832766 polyadenylate-binding protein 2-like isoform X1\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109838438 polyadenylate-binding protein 2-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109839310 polyadenylate-binding protein 3-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109847546 polyadenylate-binding protein 2-like\tK14396 PABPN1; polyadenylate-binding protein 2" }, { "name":"109819891 DEAD-box ATP-dependent RNA helicase 38-like\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"109848714 DEAD-box ATP-dependent RNA helicase 38-like\tK18655 DDX19; ATP-dependent RNA helicase DDX19\/DBP5 [EC:5.6.2.7]" }, { "name":"109848989 pre-mRNA-splicing factor SYF1\tK12867 SYF1; pre-mRNA-splicing factor SYF1" }, { "name":"109822616 protein MODIFIER OF SNC1 11-like\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"109841491 protein MODIFIER OF SNC1 11-like\tK18732 SARNP; SAP domain-containing ribonucleoprotein" }, { "name":"109819798 transcription factor Pur-alpha 1-like\tK21772 PURA; transcriptional activator protein Pur-alpha" }, { "name":"109848806 transcription factor Pur-alpha 1-like\tK21772 PURA; transcriptional activator protein Pur-alpha" }, { "name":"109825948 SAC3 family protein A isoform X1\tK23802 LENG8; SAC3 family protein LENG8\/THP3" } ] } ] }, { "name":"Surveillance factors", "children":[ { "name":"Surveillance complex", "children":[ { "name":"109833703 eukaryotic peptide chain release factor subunit 1-3-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"109841659 eukaryotic peptide chain release factor subunit 1-3\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"109848942 LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-2-like\tK03265 ETF1; peptide chain release factor subunit 1" }, { "name":"109845437 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1\tK03267 ERF3; peptide chain release factor subunit 3" }, { "name":"109819489 regulator of nonsense transcripts 1 homolog\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"109825010 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"109844463 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"109827510 regulator of nonsense transcripts UPF3-like\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"109827511 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" } ] }, { "name":"Protein phosphatase 2A", "children":[ { "name":"109820556 serine\/threonine-protein phosphatase PP2A-2 catalytic subunit-like\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109827770 serine\/threonine-protein phosphatase PP2A-1 catalytic subunit-like\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109828016 serine\/threonine-protein phosphatase PP2A-1 catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109840325 serine\/threonine-protein phosphatase PP2A catalytic subunit-like isoform X1\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109845040 serine\/threonine-protein phosphatase PP2A-1 catalytic subunit-like isoform X1\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109848502 serine\/threonine-protein phosphatase PP2A catalytic subunit\tK04382 PPP2C; serine\/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]" }, { "name":"109840215 LOW QUALITY PROTEIN: serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"109843483 serine\/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1\tK03456 PPP2R1; serine\/threonine-protein phosphatase 2A regulatory subunit A" }, { "name":"109840824 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"109844452 serine\/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1\tK04354 PPP2R2; serine\/threonine-protein phosphatase 2A regulatory subunit B" }, { "name":"109825457 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"109825856 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"109831795 probable serine\/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 isoform X1\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"109851296 serine\/threonine protein phosphatase 2A regulatory subunit B''beta-like\tK11583 PPP2R3; serine\/threonine-protein phosphatase 2A regulatory subunit B''" }, { "name":"109820044 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109824884 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109830509 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109835089 LOW QUALITY PROTEIN: serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109836687 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109841055 serine\/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109847722 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" }, { "name":"109850762 serine\/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like\tK11584 PPP2R5; serine\/threonine-protein phosphatase 2A regulatory subunit B'" } ] }, { "name":"Other surveillance factors", "children":[ { "name":"109844704 LOW QUALITY PROTEIN: uncharacterized protein LOC109844704\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"109841153 LOW QUALITY PROTEIN: protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"109845785 protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"109850181 LOW QUALITY PROTEIN: uncharacterized protein LOC109850181\tK18734 SMG8; protein SMG8" }, { "name":"109822139 protein SMG9-like isoform X1\tK18735 SMG9; protein SMG9" }, { "name":"109826475 protein SMG9-like\tK18735 SMG9; protein SMG9" }, { "name":"109831374 LOW QUALITY PROTEIN: protein SMG9-like\tK18735 SMG9; protein SMG9" }, { "name":"109835071 uncharacterized protein LOC109835071\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" }, { "name":"109837327 LOW QUALITY PROTEIN: uncharacterized protein LOC109837327\tK18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein" } ] } ] }, { "name":"Factors involved in mRNA localization", "children":[ { "name":"Cargo complex", "children":[ { "name":"109851324 pumilio homolog 24\tK14844 PUF6; pumilio homology domain family member 6" }, { "name":"109836456 piRNA biogenesis protein EXD1\tK18740 EXD1; exonuclease 3'-5' domain-containing protein 1" } ] }, { "name":"Factors that have mRNA localization signals" }, { "name":"Trans-acting binding proteins", "children":[ { "name":"109826694 far upstream element-binding protein 2-like\tK13210 FUBP; far upstream element-binding protein" }, { "name":"109827217 far upstream element-binding protein 1-like isoform X1\tK13210 FUBP; far upstream element-binding protein" }, { "name":"109840821 far upstream element-binding protein 1-like\tK13210 FUBP; far upstream element-binding protein" }, { "name":"109847178 far upstream element-binding protein 2-like\tK13210 FUBP; far upstream element-binding protein" }, { "name":"109839053 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"109840268 LOW QUALITY PROTEIN: elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"109843047 elongation factor 1-alpha\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"109848017 elongation factor 1-alpha-like\tK03231 EEF1A; elongation factor 1-alpha" }, { "name":"109833433 elongation factor 1-gamma-like isoform X1\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"109848281 elongation factor 1-gamma 2-like\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"109848282 elongation factor 1-gamma 2-like\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"109849277 elongation factor 1-gamma 2-like\tK03233 EEF1G; elongation factor 1-gamma" }, { "name":"109820703 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1\tK15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1" }, { "name":"109823862 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1\tK15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1" } ] }, { "name":"Other mRNA localization factors", "children":[ { "name":"109836461 protein PIR\tK05749 CYFIP; cytoplasmic FMR1 interacting protein" }, { "name":"109825100 RNA-binding KH domain-containing protein PEPPER-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109833895 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109834869 flowering locus K homology domain-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109839324 RNA-binding KH domain-containing protein PEPPER-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109844258 KH domain-containing protein HEN4-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109844338 KH domain-containing protein At4g18375\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109845982 RNA-binding KH domain-containing protein RCF3\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109847537 flowering locus K homology domain-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109849203 RNA-binding KH domain-containing protein RCF3-like isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109849643 KH domain-containing protein At4g18375-like\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" }, { "name":"109849929 KH domain-containing protein HEN4 isoform X1\tK21444 PCBP3_4; poly(rC)-binding protein 3\/4" } ] } ] }, { "name":"mRNA cycle factors", "children":[ { "name":"Common to processing body (P body) and stress granule", "children":[ { "name":"109820283 protein argonaute 7\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109820751 LOW QUALITY PROTEIN: protein argonaute 1B-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109826616 protein argonaute PNH1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109827701 LOW QUALITY PROTEIN: protein argonaute 1B-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109831765 protein argonaute MEL1-like isoform X1\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109834665 LOW QUALITY PROTEIN: protein argonaute 2-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109835077 LOW QUALITY PROTEIN: protein argonaute MEL1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109836490 protein argonaute PNH1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109836650 LOW QUALITY PROTEIN: protein argonaute 1A-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109840327 protein argonaute 4B-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109841074 protein argonaute 16-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109841787 protein argonaute MEL1-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109848861 protein argonaute 4B-like\tK11593 ELF2C; eukaryotic translation initiation factor 2C" }, { "name":"109820944 eukaryotic translation initiation factor NCBP-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109824080 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109825067 eukaryotic translation initiation factor\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109842561 eukaryotic translation initiation factor 4E-1-like\tK03259 EIF4E; translation initiation factor 4E" }, { "name":"109819489 regulator of nonsense transcripts 1 homolog\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"109825010 LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog\tK14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]" }, { "name":"109828776 DEAD-box ATP-dependent RNA helicase 52C-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109847974 DEAD-box ATP-dependent RNA helicase 52B-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109851275 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 37-like\tK11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]" }, { "name":"109836911 DEAD-box ATP-dependent RNA helicase 6-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"109848177 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"109825195 protein decapping 5-like\tK18749 LSM14; protein LSM14" }, { "name":"109829030 protein decapping 5-like isoform X1\tK18749 LSM14; protein LSM14" }, { "name":"109838128 protein decapping 5-like\tK18749 LSM14; protein LSM14" }, { "name":"109844510 protein decapping 5-like\tK18749 LSM14; protein LSM14" }, { "name":"109822729 probable RNA helicase SDE3\tK18422 MOV10; helicase MOV-10 [EC:5.6.2.5]" }, { "name":"109838020 LOW QUALITY PROTEIN: transportin-1-like\tK18752 TNPO1; transportin-1" }, { "name":"109844704 LOW QUALITY PROTEIN: uncharacterized protein LOC109844704\tK08873 SMG1; serine\/threonine-protein kinase SMG1 [EC:2.7.11.1]" }, { "name":"109841153 LOW QUALITY PROTEIN: protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"109845785 protein SMG7-like\tK14409 SMG7; protein SMG7" }, { "name":"109849982 zinc finger CCCH domain-containing protein 15\tK18753 ZFP36L; butyrate response factor" }, { "name":"109824418 heterogeneous nuclear ribonucleoprotein 1-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109828769 heterogeneous nuclear ribonucleoprotein 1\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109829937 UBP1-associated protein 2C\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109832502 LOW QUALITY PROTEIN: UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109832662 UBP1-associated protein 2B-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109834132 LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 4, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109834360 glycine-rich RNA-binding protein 2, mitochondrial-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109835541 UBP1-associated protein 2C-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109838837 heterogeneous nuclear ribonucleoprotein A1, A2\/B1 homolog\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109842377 LOW QUALITY PROTEIN: UBP1-associated protein 2A-like\tK12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1\/A3" }, { "name":"109837050 la-related protein 1C isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"109842791 la-related protein 1A isoform X1\tK18757 LARP1; la-related protein 1" }, { "name":"109848863 la-related protein 1A-like isoform X1\tK18757 LARP1; la-related protein 1" } ] }, { "name":"P-body specific factors", "children":[ { "name":"109819555 mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"109850236 LOW QUALITY PROTEIN: mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"109823985 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109836799 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109843351 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109849330 uncharacterized protein LOC109849330 isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109850370 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"109848735 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"109823792 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"109830373 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"109827864 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"109820590 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"109831754 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"109826241 U6 snRNA-associated Sm-like protein LSm6\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"109837316 U6 snRNA-associated Sm-like protein LSm6\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"109825103 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"109838380 sm-like protein LSM8 isoform X1\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"109819568 tubulin alpha chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"109833162 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"109845510 tubulin alpha-3 chain\tK07374 TUBA; tubulin alpha" }, { "name":"109848751 tubulin alpha-3 chain-like\tK07374 TUBA; tubulin alpha" }, { "name":"109849014 tubulin alpha chain\tK07374 TUBA; tubulin alpha" }, { "name":"109848315 CCR4-NOT transcription complex subunit 1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"109823726 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"109828868 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109832947 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109850384 CCR4-NOT transcription complex subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109842835 uncharacterized protein LOC109842835 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109846491 uncharacterized protein LOC109846491 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109846663 uncharacterized protein LOC109846663\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109825281 carbon catabolite repressor protein 4 homolog 4-like isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109833449 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109851011 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109821804 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109823280 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109832395 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109832410 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835112 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835482 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835488 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835490 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835491 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835493 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835494 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109836901 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109841223 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109843685 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109851476 DIS3-like exonuclease 2 isoform X1\tK18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]" }, { "name":"109833077 uncharacterized protein LOC109833077\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"109844316 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"109850864 protein PAT1 homolog 1-like\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"109840185 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"109844463 regulator of nonsense transcripts UPF2\tK14327 UPF2; regulator of nonsense transcripts 2" }, { "name":"109827510 regulator of nonsense transcripts UPF3-like\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"109827511 regulator of nonsense transcripts UPF3-like isoform X1\tK14328 UPF3; regulator of nonsense transcripts 3" }, { "name":"109835422 DNA-directed RNA polymerase II subunit RPB7-like\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"109850380 DNA-directed RNA polymerase II subunit RPB7\tK03015 RPB7; DNA-directed RNA polymerase II subunit RPB7" }, { "name":"109830262 uncharacterized protein LOC109830262\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"109831916 uncharacterized protein LOC109831916\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"109832963 YTH domain-containing family protein 2-like\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"109839988 uncharacterized protein LOC109839988 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"109841419 uncharacterized protein LOC109841419 isoform X1\tK20102 YTHDF; YTH domain-containing family protein" }, { "name":"109841428 YTH domain-containing family protein 1-like isoform X1\tK20102 YTHDF; YTH domain-containing family protein" } ] }, { "name":"Stress granule specific factors", "children":[ { "name":"109819637 oligouridylate-binding protein 1-like\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"109841999 oligouridylate-binding protein 1B-like isoform X1\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"109844359 oligouridylate-binding protein 1-like\tK13201 TIA1; nucleolysin TIA-1\/TIAR" }, { "name":"109820156 polyadenylate-binding protein 7-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109820267 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109821280 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109827895 polyadenylate-binding protein 2-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109834066 LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109835606 LOW QUALITY PROTEIN: polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109841124 polyadenylate-binding protein 8-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109846496 polyadenylate-binding protein 3-like\tK13126 PABPC; polyadenylate-binding protein" }, { "name":"109823888 ras GTPase-activating protein-binding protein 1-like\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"109825210 ras GTPase-activating protein-binding protein 2-like\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"109834401 putative G3BP-like protein\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"109839426 ras GTPase-activating protein-binding protein 1-like\tK24983 G3BP2; Ras GTPase-activating protein-binding protein 2" }, { "name":"109844861 eukaryotic translation initiation factor 2A isoform X1\tK15026 EIF2A; translation initiation factor 2A" }, { "name":"109830142 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like\tK03253 EIF3B; translation initiation factor 3 subunit B" }, { "name":"109828423 eukaryotic initiation factor 4A-8\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109840346 eukaryotic initiation factor 4A-8-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109844273 eukaryotic initiation factor 4A-8-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109849775 eukaryotic initiation factor 4A-1-like\tK03257 EIF4A; translation initiation factor 4A" }, { "name":"109820115 eukaryotic initiation factor 4A-3\tK13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]" }, { "name":"109826861 eukaryotic translation initiation factor 4B3-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"109837629 eukaryotic translation initiation factor 4B2-like\tK03258 EIF4B; translation initiation factor 4B" }, { "name":"109819576 eukaryotic translation initiation factor 4G\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109827130 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109838993 eukaryotic translation initiation factor 4G-like isoform X1\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109841273 LOW QUALITY PROTEIN: eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109844964 LOW QUALITY PROTEIN: eukaryotic translation initiation factor-like\tK03260 EIF4G; translation initiation factor 4G" }, { "name":"109820689 LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit beta-like protein\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"109842818 LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit beta-like protein\tK14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein" }, { "name":"109845277 tudor domain-containing protein 3\tK18404 TDRD3; tudor domain-containing protein 3" } ] } ] } ] }, { "name":"mRNA degradation factors", "children":[ { "name":"5'-3' decay", "children":[ { "name":"Decapping complex", "children":[ { "name":"109823985 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109836799 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109843351 mRNA-decapping enzyme-like protein isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109849330 uncharacterized protein LOC109849330 isoform X1\tK12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]" }, { "name":"109819555 mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"109850236 LOW QUALITY PROTEIN: mRNA-decapping enzyme subunit 2-like\tK12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]" }, { "name":"109836911 DEAD-box ATP-dependent RNA helicase 6-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"109848177 DEAD-box ATP-dependent RNA helicase 8-like\tK12614 DDX6; ATP-dependent RNA helicase DDX6\/DHH1 [EC:5.6.2.7]" }, { "name":"109840185 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like\tK12616 EDC4; enhancer of mRNA-decapping protein 4" }, { "name":"109833077 uncharacterized protein LOC109833077\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"109844316 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" }, { "name":"109850864 protein PAT1 homolog 1-like\tK12617 PATL1; DNA topoisomerase 2-associated protein PAT1" } ] }, { "name":"Lsm complex", "children":[ { "name":"109850370 sm-like protein LSM1B\tK12620 LSM1; U6 snRNA-associated Sm-like protein LSm1" }, { "name":"109848735 sm-like protein LSM2\tK12621 LSM2; U6 snRNA-associated Sm-like protein LSm2" }, { "name":"109823792 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"109830373 sm-like protein LSM3B\tK12622 LSM3; U6 snRNA-associated Sm-like protein LSm3" }, { "name":"109827864 probable U6 snRNA-associated Sm-like protein LSm4\tK12623 LSM4; U6 snRNA-associated Sm-like protein LSm4" }, { "name":"109820590 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"109831754 sm-like protein LSM5\tK12624 LSM5; U6 snRNA-associated Sm-like protein LSm5" }, { "name":"109826241 U6 snRNA-associated Sm-like protein LSm6\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"109837316 U6 snRNA-associated Sm-like protein LSm6\tK12625 LSM6; U6 snRNA-associated Sm-like protein LSm6" }, { "name":"109825103 sm-like protein LSM8\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" }, { "name":"109838380 sm-like protein LSM8 isoform X1\tK12627 LSM8; U6 snRNA-associated Sm-like protein LSm8" } ] }, { "name":"5' exonucleases", "children":[ { "name":"109825184 5'-3' exoribonuclease 3 isoform X1\tK12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]" }, { "name":"109832974 5'-3' exoribonuclease 4-like isoform X1\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" }, { "name":"109848512 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4-like\tK20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]" } ] }, { "name":"Other 5'-3' decay factors" } ] }, { "name":"3'-5' decay", "children":[ { "name":"Core exosome factors", "children":[ { "name":"109849586 LOW QUALITY PROTEIN: exosome complex component CSL4\tK07573 CSL4; exosome complex component CSL4" }, { "name":"109827452 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"109832570 putative exosome complex component rrp40 isoform X1\tK03681 RRP40; exosome complex component RRP40" }, { "name":"109844439 exosome complex component RRP41 homolog isoform X1\tK11600 RRP41; exosome complex component RRP41" }, { "name":"109837431 exosome complex exonuclease RRP46 homolog\tK12590 RRP46; exosome complex component RRP46" }, { "name":"109850249 exosome complex component RRP41-like\tK12587 MTR3; exosome complex component MTR3" }, { "name":"109849401 exosome complex component RRP42 isoform X1\tK12589 RRP42; exosome complex component RRP42" }, { "name":"109823595 exosome complex component RRP43\tK12586 RRP43; exosome complex component RRP43" }, { "name":"109830331 exosome complex component RRP45A-like\tK03678 RRP45; exosome complex component RRP45" } ] }, { "name":"Exosome cofactors", "children":[ { "name":"109825357 exosome complex exonuclease RRP44 homolog A\tK12585 DIS3; exosome complex exonuclease DIS3\/RRP44 [EC:3.1.13.-]" }, { "name":"109843909 protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"109847960 protein RRP6-like 3\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"109850962 LOW QUALITY PROTEIN: protein RRP6-like 2\tK12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]" }, { "name":"109843983 nuclear nucleic acid-binding protein C1D\tK12592 C1D; exosome complex protein LRP1" }, { "name":"109847619 nuclear nucleic acid-binding protein C1D-like\tK12592 C1D; exosome complex protein LRP1" }, { "name":"109850424 uncharacterized protein LOC109850424\tK12593 MPHOSPH6; M-phase phosphoprotein 6, animal type" } ] }, { "name":"TRAMP complex", "children":[ { "name":"109848033 non-canonical poly(A) RNA polymerase PAPD5 isoform X1\tK03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5\/7 [EC:2.7.7.19]" }, { "name":"109826762 DExH-box ATP-dependent RNA helicase DExH9\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" }, { "name":"109840545 DExH-box ATP-dependent RNA helicase DExH10\tK12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]" } ] }, { "name":"Ski complex", "children":[ { "name":"109851034 DExH-box ATP-dependent RNA helicase DExH11\tK12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]" }, { "name":"109830617 LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3-like\tK12600 SKI3; superkiller protein 3" }, { "name":"109849454 LOW QUALITY PROTEIN: WD repeat-containing protein VIP3\tK12602 WDR61; WD repeat-containing protein 61" } ] }, { "name":"Ccr4-NOT complex", "children":[ { "name":"109825281 carbon catabolite repressor protein 4 homolog 4-like isoform X1\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109833449 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109851011 carbon catabolite repressor protein 4 homolog 1-like\tK12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]" }, { "name":"109848315 CCR4-NOT transcription complex subunit 1\tK12604 CNOT1; CCR4-NOT transcription complex subunit 1" }, { "name":"109823726 probable NOT transcription complex subunit VIP2 isoform X1\tK12605 CNOT2; CCR4-NOT transcription complex subunit 2" }, { "name":"109828868 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109832947 general negative regulator of transcription subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109850384 CCR4-NOT transcription complex subunit 3-like isoform X1\tK12580 CNOT3; CCR4-NOT transcription complex subunit 3" }, { "name":"109842835 uncharacterized protein LOC109842835 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109846491 uncharacterized protein LOC109846491 isoform X1\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109846663 uncharacterized protein LOC109846663\tK10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]" }, { "name":"109821804 LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109823280 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109832395 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109832410 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835112 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835482 probable CCR4-associated factor 1 homolog 6\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835488 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835490 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835491 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835493 probable CCR4-associated factor 1 homolog 9\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109835494 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109836901 probable CCR4-associated factor 1 homolog 11\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109841223 probable CCR4-associated factor 1 homolog 7\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109843685 putative CCR4-associated factor 1 homolog 8\tK12581 CNOT7_8; CCR4-NOT transcription complex subunit 7\/8" }, { "name":"109820450 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"109846344 cell differentiation protein RCD1 homolog\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"109846509 cell differentiation protein RCD1 homolog isoform X1\tK12606 RCD1; CCR4-NOT transcription complex subunit 9" }, { "name":"109830920 CCR4-NOT transcription complex subunit 10-B-like\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"109841133 CCR4-NOT transcription complex subunit 10-like\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"109845794 CCR4-NOT transcription complex subunit 10-like isoform X1\tK12607 CNOT10; CCR4-NOT transcription complex subunit 10" }, { "name":"109843845 ABC transporter I family member 20\tK12608 CAF16; CCR4-NOT complex subunit CAF16" }, { "name":"109850835 ABC transporter I family member 19 isoform X1\tK12608 CAF16; CCR4-NOT complex subunit CAF16" } ] }, { "name":"Pan complex" }, { "name":"Other 3'-5' decay factors", "children":[ { "name":"109824557 poly(A)-specific ribonuclease PARN-like\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"109849098 poly(A)-specific ribonuclease PARN isoform X1\tK01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]" }, { "name":"109829078 DExH-box ATP-dependent RNA helicase DExH3-like\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"109833086 DExH-box ATP-dependent RNA helicase DExH6\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"109836400 DExH-box ATP-dependent RNA helicase DExH1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"109843906 DExH-box ATP-dependent RNA helicase DExH3 isoform X1\tK14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]" }, { "name":"109831735 uncharacterized protein LOC109831735\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"109849811 LOW QUALITY PROTEIN: ERI1 exoribonuclease 2-like\tK18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]" }, { "name":"109844337 protein NRDE2 homolog\tK26109 NRDE2; nuclear exosome regulator NRDE2" }, { "name":"109844394 protein RST1 isoform X1\tK27498 FOCAD; focadhesin" } ] } ] }, { "name":"Other degradation factors", "children":[ { "name":"RNases" } ] } ] } ] }, { "name":"Prokaryotic type", "children":[ { "name":"Bacterial mRNA degradation factors", "children":[ { "name":"RNA degradosome components", "children":[ { "name":"Ribonucreases", "children":[ { "name":"109829106 oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] }, { "name":"Helicases", "children":[ { "name":"109848140 uncharacterized protein LOC109848140 isoform X1\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" } ] }, { "name":"Other RNA degradosome components", "children":[ { "name":"109829793 cytosolic enolase 3\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"109841026 enolase 1, chloroplastic\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"109848800 enolase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"109848803 enolase-like\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"109819421 polyribonucleotide nucleotidyltransferase 2, mitochondrial\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"109848338 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"109820760 ATP-dependent 6-phosphofructokinase 6-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"109826803 ATP-dependent 6-phosphofructokinase 6-like isoform X1\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"109840191 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 2-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"109840616 ATP-dependent 6-phosphofructokinase 6-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"109847172 ATP-dependent 6-phosphofructokinase 6-like\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" }, { "name":"109849124 ATP-dependent 6-phosphofructokinase 5, chloroplastic\tK00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]" } ] } ] }, { "name":"Other RNA degradation factors", "children":[ { "name":"Chaperones", "children":[ { "name":"109843600 LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial-like\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"109851228 heat shock 70 kDa protein, mitochondrial\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"109819768 chaperonin CPN60-like 2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109822014 ruBisCO large subunit-binding protein subunit alpha-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109827156 chaperonin 60 subunit beta 2, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109836922 ruBisCO large subunit-binding protein subunit beta, chloroplastic\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109848325 chaperonin CPN60-2, mitochondrial\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109849403 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109850476 ruBisCO large subunit-binding protein subunit alpha\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109850519 ruBisCO large subunit-binding protein subunit alpha-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"109851218 chaperonin CPN60-2, mitochondrial-like\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] }, { "name":"Others" }, { "name":"Bacterial Small RNA Regulators" } ] } ] }, { "name":"Archeal mRNA degradation factors", "children":[ { "name":"Exosome components", "children":[ { "name":"Core exosome", "children":[ { "name":"109827452 exosome complex component RRP4 homolog\tK03679 RRP4; exosome complex component RRP4" }, { "name":"109849586 LOW QUALITY PROTEIN: exosome complex component CSL4\tK07573 CSL4; exosome complex component CSL4" } ] }, { "name":"Cofactors", "children":[ { "name":"109844439 exosome complex component RRP41 homolog isoform X1\tK11600 RRP41; exosome complex component RRP41" }, { "name":"109849401 exosome complex component RRP42 isoform X1\tK12589 RRP42; exosome complex component RRP42" } ] }, { "name":"Others" } ] } ] } ] } ] }