{ "name":"bkr00001", "children":[ { "name":"09100 Metabolism", "children":[ { "name":"09101 Carbohydrate metabolism", "children":[ { "name":"00010 Glycolysis \/ Gluconeogenesis [PATH:bkr00010]", "children":[ { "name":"AAFP32_08680 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"AAFP32_04735 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"AAFP32_06260 glpX; (GenBank) class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"AAFP32_14915 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"AAFP32_08690 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"AAFP32_08700 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_09290 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_14300 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_08695 phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"AAFP32_13975 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"AAFP32_08795 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"AAFP32_00165 pyruvate dehydrogenase\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_03285 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_07845 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_08020 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase\tK00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_00055 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_11025 aldehyde dehydrogenase family protein\tK00129 ALDH3; aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5]" }, { "name":"AAFP32_03385 aldehyde dehydrogenase family protein\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"AAFP32_04685 aldehyde dehydrogenase family protein\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_10985 aldose epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_07950 ppgK; (GenBank) polyphosphate--glucose phosphotransferase\tK00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]" }, { "name":"AAFP32_14390 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" } ] }, { "name":"00020 Citrate cycle (TCA cycle) [PATH:bkr00020]", "children":[ { "name":"AAFP32_06835 citrate synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"AAFP32_04225 bifunctional 2-methylcitrate synthase\/citrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"AAFP32_02730 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_09490 acnA; (GenBank) aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_06750 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"AAFP32_07080 multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_11580 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"AAFP32_11585 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"AAFP32_05730 acetyl-CoA hydrolase\/transferase family protein\tK18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]" }, { "name":"AAFP32_11645 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11650 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11635 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"AAFP32_11640 succinate dehydrogenase hydrophobic membrane anchor subunit\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"AAFP32_00855 FumA C-terminus\/TtdB family hydratase beta subunit\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"AAFP32_06250 class II fumarate hydratase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_03310 malate:quinone oxidoreductase\tK00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]" }, { "name":"AAFP32_08150 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"AAFP32_14390 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" }, { "name":"AAFP32_00165 pyruvate dehydrogenase\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_03285 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_07845 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_08020 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase\tK00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]" } ] }, { "name":"00030 Pentose phosphate pathway [PATH:bkr00030]", "children":[ { "name":"AAFP32_08680 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"AAFP32_08885 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"AAFP32_08670 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"AAFP32_08675 tal; (GenBank) transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"AAFP32_07330 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"AAFP32_12170 deoC; (GenBank) deoxyribose-phosphate aldolase\tK01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]" }, { "name":"AAFP32_05600 PfkB family carbohydrate kinase\tK00852 rbsK; ribokinase [EC:2.7.1.15]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_05195 ribose-phosphate diphosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"AAFP32_14915 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"AAFP32_06260 glpX; (GenBank) class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"AAFP32_04735 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" } ] }, { "name":"00040 Pentose and glucuronate interconversions [PATH:bkr00040]", "children":[ { "name":"AAFP32_09255 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"AAFP32_01715 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_13550 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_08885 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" } ] }, { "name":"00051 Fructose and mannose metabolism [PATH:bkr00051]", "children":[ { "name":"AAFP32_06425 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"AAFP32_05985 manA; (GenBank) mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"AAFP32_06035 manB; (GenBank) phosphomannomutase\/phosphoglucomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"AAFP32_12165 phospho-sugar mutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"AAFP32_11630 mannose-1-phosphate guanylyltransferase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" }, { "name":"AAFP32_04735 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"AAFP32_06260 glpX; (GenBank) class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"AAFP32_14915 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"AAFP32_08690 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"AAFP32_07330 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" } ] }, { "name":"00052 Galactose metabolism [PATH:bkr00052]", "children":[ { "name":"AAFP32_10985 aldose epimerase\tK01785 galM; aldose 1-epimerase [EC:5.1.3.3]" }, { "name":"AAFP32_12825 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"AAFP32_01715 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_13550 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_04735 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" } ] }, { "name":"00053 Ascorbate and aldarate metabolism [PATH:bkr00053]", "children":[ { "name":"AAFP32_09255 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00500 Starch and sucrose metabolism [PATH:bkr00500]", "children":[ { "name":"AAFP32_01715 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_13550 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_07580 family 1 glycosylhydrolase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"AAFP32_14495 hypothetical protein\tK16146 pep2; maltokinase [EC:2.7.1.175]" }, { "name":"AAFP32_13070 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" }, { "name":"AAFP32_13850 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" }, { "name":"AAFP32_13855 trehalose-phosphatase\tK01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_08680 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"AAFP32_06425 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" } ] }, { "name":"00620 Pyruvate metabolism [PATH:bkr00620]", "children":[ { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_00165 pyruvate dehydrogenase\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_03285 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_07845 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_08020 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase\tK00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_00055 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"AAFP32_10200 phosphotransacetylase\tK00625 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"AAFP32_08795 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_03385 aldehyde dehydrogenase family protein\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"AAFP32_04685 aldehyde dehydrogenase family protein\tK00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]" }, { "name":"AAFP32_05730 acetyl-CoA hydrolase\/transferase family protein\tK18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]" }, { "name":"AAFP32_06525 alpha-hydroxy acid oxidase\tK00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]" }, { "name":"AAFP32_14770 poxB; (GenBank) ubiquinone-dependent pyruvate dehydrogenase\tK00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]" }, { "name":"AAFP32_01575 dld; (GenBank) D-lactate dehydrogenase\tK03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]" }, { "name":"AAFP32_00635 FAD-binding and (Fe-S)-binding domain-containing protein\tK18930 dld; D-lactate dehydrogenase" }, { "name":"AAFP32_09045 MBL fold metallo-hydrolase\tK01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]" }, { "name":"AAFP32_02135 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"AAFP32_03295 NAD-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"AAFP32_08150 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_03310 malate:quinone oxidoreductase\tK00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]" }, { "name":"AAFP32_00855 FumA C-terminus\/TtdB family hydratase beta subunit\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"AAFP32_06250 class II fumarate hydratase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"AAFP32_14390 phosphoenolpyruvate carboxykinase (GTP)\tK01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]" }, { "name":"AAFP32_01370 aceB; (GenBank) malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"AAFP32_10505 aceB; (GenBank) malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_09380 leuA; (GenBank) 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" } ] }, { "name":"00630 Glyoxylate and dicarboxylate metabolism [PATH:bkr00630]", "children":[ { "name":"AAFP32_01360 aceA; (GenBank) isocitrate lyase\tK01637 ICL; isocitrate\/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]" }, { "name":"AAFP32_01370 aceB; (GenBank) malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"AAFP32_10505 aceB; (GenBank) malate synthase A\tK01638 aceB; malate synthase [EC:2.3.3.9]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_06835 citrate synthase\tK01647 CS; citrate synthase [EC:2.3.3.1]" }, { "name":"AAFP32_04225 bifunctional 2-methylcitrate synthase\/citrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"AAFP32_02730 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_09490 acnA; (GenBank) aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_05915 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"AAFP32_03320 FAD-linked oxidase C-terminal domain-containing protein\tK00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]" }, { "name":"AAFP32_10500 FAD-linked oxidase C-terminal domain-containing protein\tK00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]" }, { "name":"AAFP32_16105 FAD-linked oxidase C-terminal domain-containing protein\tK00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]" }, { "name":"AAFP32_10495 FAD-binding oxidoreductase\tK11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]" }, { "name":"AAFP32_10490 heterodisulfide reductase-related iron-sulfur binding cluster\tK11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]" }, { "name":"AAFP32_02695 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"AAFP32_02315 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"AAFP32_02650 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_01470 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"AAFP32_01475 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_01480 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_09790 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_03245 gcl; (GenBank) glyoxylate carboligase\tK01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]" }, { "name":"AAFP32_03235 TIM barrel protein\tK01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]" }, { "name":"AAFP32_03240 2-hydroxy-3-oxopropionate reductase\tK00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]" }, { "name":"AAFP32_03265 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"AAFP32_07080 multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"AAFP32_16195 4Fe-4S dicluster domain-containing protein\tK00124 fdoH; formate dehydrogenase iron-sulfur subunit" }, { "name":"AAFP32_00275 purU; (GenBank) formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"AAFP32_04970 purU; (GenBank) formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"AAFP32_01330 fmdA; (GenBank) formamidase\tK01455 fmdA; formamidase [EC:3.5.1.49]" } ] }, { "name":"00640 Propanoate metabolism [PATH:bkr00640]", "children":[ { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_15295 acetate--CoA ligase\tK01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]" }, { "name":"AAFP32_10200 phosphotransacetylase\tK00625 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"AAFP32_00200 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_15620 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_00195 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_15615 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_00190 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_15610 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_05915 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"AAFP32_11585 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"AAFP32_11580 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"AAFP32_04225 bifunctional 2-methylcitrate synthase\/citrate synthase\tK01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]" }, { "name":"AAFP32_04215 MmgE\/PrpD family protein\tK01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]" }, { "name":"AAFP32_02730 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_09490 acnA; (GenBank) aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_04220 prpB; (GenBank) methylisocitrate lyase\tK03417 prpB; methylisocitrate lyase [EC:4.1.3.30]" }, { "name":"AAFP32_01360 aceA; (GenBank) isocitrate lyase\tK01637 ICL; isocitrate\/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]" } ] }, { "name":"00650 Butanoate metabolism [PATH:bkr00650]", "children":[ { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_00380 3-hydroxyacyl-CoA dehydrogenase family protein\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_08160 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_02065 CoA-transferase\tK01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12]" }, { "name":"AAFP32_02070 CoA-transferase\tK01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]" }, { "name":"AAFP32_11645 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11650 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11635 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"AAFP32_11640 succinate dehydrogenase hydrophobic membrane anchor subunit\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_00170 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_01985 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13450 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13525 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_15665 succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_16475 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_05730 acetyl-CoA hydrolase\/transferase family protein\tK18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]" }, { "name":"AAFP32_00570 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"AAFP32_05995 CoA transferase subunit A\tK01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]" }, { "name":"AAFP32_05990 CoA transferase subunit B\tK01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]" }, { "name":"AAFP32_01710 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_05375 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_15570 3-hydroxybutyrate dehydrogenase\tK00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]" }, { "name":"AAFP32_00815 serine hydrolase domain-containing protein\tK18372 acmB; methyl acetate hydrolase [EC:3.1.1.114]" }, { "name":"AAFP32_02895 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_05530 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10310 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10565 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11170 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11910 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_16140 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11165 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"AAFP32_05545 2,3-butanediol dehydrogenase\tK00004 BDH; (R,R)-butanediol dehydrogenase \/ meso-butanediol dehydrogenase \/ diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]" }, { "name":"AAFP32_00615 acetoin reductase\tK03366 butA; meso-butanediol dehydrogenase \/ (S,S)-butanediol dehydrogenase \/ diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]" } ] }, { "name":"00660 C5-Branched dibasic acid metabolism [PATH:bkr00660]", "children":[ { "name":"AAFP32_02895 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_05530 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10310 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10565 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11170 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11910 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_16140 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11165 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"AAFP32_00850 CaiB\/BaiF CoA-transferase family protein\tK18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]" }, { "name":"AAFP32_11585 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"AAFP32_11580 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"AAFP32_10975 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"AAFP32_10970 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"AAFP32_11115 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" } ] }, { "name":"00562 Inositol phosphate metabolism [PATH:bkr00562]", "children":[ { "name":"AAFP32_01400 inositol monophosphatase family protein\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"AAFP32_05350 inositol-3-phosphate synthase\tK01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]" }, { "name":"AAFP32_08690 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" } ] }, { "name":"00566 Sulfoquinovose metabolism [PATH:bkr00566]", "children":[ { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_01840 hisD; (GenBank) histidinol dehydrogenase\tK15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]" } ] } ] }, { "name":"09102 Energy metabolism", "children":[ { "name":"00190 Oxidative phosphorylation [PATH:bkr00190]", "children":[ { "name":"AAFP32_01885 NAD(P)\/FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"AAFP32_05275 NAD(P)\/FAD-dependent oxidoreductase\tK03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]" }, { "name":"AAFP32_11645 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11650 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11635 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"AAFP32_11640 succinate dehydrogenase hydrophobic membrane anchor subunit\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"AAFP32_08100 Rieske 2Fe-2S domain-containing protein\tK03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]" }, { "name":"AAFP32_08095 ubiquinol-cytochrome c reductase cytochrome b subunit\tK03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]" }, { "name":"AAFP32_08105 cytochrome c\tK03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]" }, { "name":"AAFP32_08665 heme o synthase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"AAFP32_08070 cytochrome c oxidase subunit 4\tK27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]" }, { "name":"AAFP32_08110 heme-copper oxidase subunit III\tK02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]" }, { "name":"AAFP32_07355 ctaD; (GenBank) cytochrome c oxidase subunit I\tK02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]" }, { "name":"AAFP32_08065 ctaD; (GenBank) cytochrome c oxidase subunit I\tK02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]" }, { "name":"AAFP32_08060 coxB; (GenBank) cytochrome c oxidase subunit II\tK02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]" }, { "name":"AAFP32_08650 COX15\/CtaA family protein\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"AAFP32_09570 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"AAFP32_09565 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"AAFP32_07200 atpA; (GenBank) F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"AAFP32_07210 atpD; (GenBank) F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"AAFP32_07205 F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"AAFP32_07195 F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"AAFP32_07215 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"AAFP32_07180 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"AAFP32_07190 F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"AAFP32_07185 atpE; (GenBank) F0F1 ATP synthase subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"AAFP32_04025 inorganic diphosphatase\tK01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]" }, { "name":"AAFP32_14160 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"AAFP32_05305 ppk2; (GenBank) polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" } ] }, { "name":"00195 Photosynthesis" }, { "name":"00196 Photosynthesis - antenna proteins" }, { "name":"00710 Carbon fixation by Calvin cycle [PATH:bkr00710]", "children":[ { "name":"AAFP32_08695 phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"AAFP32_08700 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_09290 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_14300 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_14915 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"AAFP32_06260 glpX; (GenBank) class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"AAFP32_08670 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" }, { "name":"AAFP32_07330 ribose-5-phosphate isomerase\tK01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]" }, { "name":"AAFP32_08690 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"AAFP32_08885 rpe; (GenBank) ribulose-phosphate 3-epimerase\tK01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]" }, { "name":"AAFP32_08675 tal; (GenBank) transaldolase\tK00616 TALDO1; transaldolase [EC:2.2.1.2]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" } ] }, { "name":"00720 Other carbon fixation pathways [PATH:bkr00720]", "children":[ { "name":"AAFP32_08150 pyruvate carboxylase\tK01958 PC; pyruvate carboxylase [EC:6.4.1.1]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_00855 FumA C-terminus\/TtdB family hydratase beta subunit\tK01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]" }, { "name":"AAFP32_06250 class II fumarate hydratase\tK01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]" }, { "name":"AAFP32_11645 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit\tK00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11650 succinate dehydrogenase iron-sulfur subunit\tK00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]" }, { "name":"AAFP32_11635 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit\tK00241 sdhC; succinate dehydrogenase cytochrome b subunit" }, { "name":"AAFP32_11640 succinate dehydrogenase hydrophobic membrane anchor subunit\tK00242 sdhD; succinate dehydrogenase membrane anchor subunit" }, { "name":"AAFP32_11580 sucD; (GenBank) succinate--CoA ligase subunit alpha\tK01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]" }, { "name":"AAFP32_11585 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta\tK01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_06750 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"AAFP32_02730 aconitate hydratase\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_09490 acnA; (GenBank) aconitate hydratase AcnA\tK27802 acnA; aconitate hydratase A \/ 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]" }, { "name":"AAFP32_00875 CoA transferase\tK14470 mct; 2-methylfumaryl-CoA isomerase [EC:5.4.1.3]" }, { "name":"AAFP32_00870 MaoC family dehydratase N-terminal domain-containing protein\tK09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153]" }, { "name":"AAFP32_12820 formate--tetrahydrofolate ligase\tK01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]" }, { "name":"AAFP32_04980 bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"AAFP32_01310 methylenetetrahydrofolate reductase\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"AAFP32_10200 phosphotransacetylase\tK00625 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" } ] }, { "name":"00680 Methane metabolism [PATH:bkr00680]", "children":[ { "name":"AAFP32_00445 fdhA; (GenBank) formaldehyde dehydrogenase, glutathione-independent\tK00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]" }, { "name":"AAFP32_16195 4Fe-4S dicluster domain-containing protein\tK00124 fdoH; formate dehydrogenase iron-sulfur subunit" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_14915 fbaA; (GenBank) class II fructose-bisphosphate aldolase\tK01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]" }, { "name":"AAFP32_06260 glpX; (GenBank) class II fructose-bisphosphatase\tK02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]" }, { "name":"AAFP32_04735 ATP-dependent 6-phosphofructokinase\tK21071 pfk; ATP-dependent phosphofructokinase \/ diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]" }, { "name":"AAFP32_10200 phosphotransacetylase\tK00625 pta; phosphate acetyltransferase [EC:2.3.1.8]" }, { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_13975 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"AAFP32_11130 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"AAFP32_13620 serC; (GenBank) phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"AAFP32_08555 serB; (GenBank) phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"AAFP32_06005 coenzyme F420-0:L-glutamate ligase\tK24998 fbiB; dehydro coenzyme F420 reductase \/ coenzyme F420-0:L-glutamate ligase \/ coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34]" } ] }, { "name":"00910 Nitrogen metabolism [PATH:bkr00910]", "children":[ { "name":"AAFP32_01330 fmdA; (GenBank) formamidase\tK01455 fmdA; formamidase [EC:3.5.1.49]" }, { "name":"AAFP32_12040 multicopper oxidase domain-containing protein\tK00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]" }, { "name":"AAFP32_05015 nitronate monooxygenase family protein\tK00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]" }, { "name":"AAFP32_00740 carbon-nitrogen hydrolase family protein\tK01501 E3.5.5.1; nitrilase [EC:3.5.5.1]" }, { "name":"AAFP32_06155 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"AAFP32_10575 Glu\/Leu\/Phe\/Val dehydrogenase dimerization domain-containing protein\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"AAFP32_05065 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_08805 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"AAFP32_08800 glutamate synthase subunit beta\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"AAFP32_06255 carbonic anhydrase\tK01673 cynT; carbonic anhydrase [EC:4.2.1.1]" } ] }, { "name":"00920 Sulfur metabolism [PATH:bkr00920]", "children":[ { "name":"AAFP32_11255 NAD(P)H-dependent oxidoreductase\tK00299 ssuE; FMN reductase [EC:1.5.1.38]" }, { "name":"AAFP32_13280 NADPH-dependent FMN reductase\tK00299 ssuE; FMN reductase [EC:1.5.1.38]" }, { "name":"AAFP32_06560 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_12245 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_11265 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"AAFP32_11270 cysK; (GenBank) cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"AAFP32_08465 homoserine O-acetyltransferase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"AAFP32_14285 alpha\/beta fold hydrolase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"AAFP32_13495 PLP-dependent aspartate aminotransferase family protein\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"AAFP32_14850 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" } ] } ] }, { "name":"09103 Lipid metabolism", "children":[ { "name":"00061 Fatty acid biosynthesis [PATH:bkr00061]", "children":[ { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_07825 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"AAFP32_07835 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"AAFP32_07830 beta-ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"AAFP32_00180 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_07820 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_01445 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08445 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08570 beta-ketoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_09840 SDR family oxidoreductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_15265 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" } ] }, { "name":"00062 Fatty acid elongation" }, { "name":"00071 Fatty acid degradation [PATH:bkr00071]", "children":[ { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" }, { "name":"AAFP32_02035 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_02160 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_02165 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_05460 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_10560 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_02210 acyl-CoA dehydrogenase family protein\tK00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]" }, { "name":"AAFP32_02795 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_10705 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_01655 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"AAFP32_07565 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00073 Cutin, suberine and wax biosynthesis" }, { "name":"00074 Mycolic acid biosynthesis [PATH:bkr00074]", "children":[ { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_12355 holo-ACP synthase\tK00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]" }, { "name":"AAFP32_07825 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"AAFP32_07835 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"AAFP32_08565 fabI; (GenBank) enoyl-ACP reductase FabI\tK11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]" }, { "name":"AAFP32_05915 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" } ] }, { "name":"00100 Steroid biosynthesis" }, { "name":"00120 Primary bile acid biosynthesis" }, { "name":"00121 Secondary bile acid biosynthesis" }, { "name":"00140 Steroid hormone biosynthesis" }, { "name":"00561 Glycerolipid metabolism [PATH:bkr00561]", "children":[ { "name":"AAFP32_03265 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_00055 NAD(P)-dependent alcohol dehydrogenase\tK13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]" }, { "name":"AAFP32_04250 glpK; (GenBank) glycerol kinase GlpK\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"AAFP32_09980 HAD-IIA family hydrolase\tK06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]" }, { "name":"AAFP32_08135 lysophospholipid acyltransferase family protein\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" } ] }, { "name":"00564 Glycerophospholipid metabolism [PATH:bkr00564]", "children":[ { "name":"AAFP32_10955 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase\tK00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]" }, { "name":"AAFP32_04240 glycerol-3-phosphate dehydrogenase\/oxidase\tK00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]" }, { "name":"AAFP32_08135 lysophospholipid acyltransferase family protein\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" }, { "name":"AAFP32_12975 tagD; (GenBank) glycerol-3-phosphate cytidylyltransferase\tK00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]" }, { "name":"AAFP32_01505 glycerophosphodiester phosphodiesterase family protein\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"AAFP32_04480 glycerophosphodiester phosphodiesterase family protein\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"AAFP32_08255 glycerophosphodiester phosphodiesterase family protein\tK01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]" }, { "name":"AAFP32_10730 phosphatidate cytidylyltransferase\tK00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]" }, { "name":"AAFP32_10470 pgsA; (GenBank) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase\tK00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]" }, { "name":"AAFP32_03900 cls; (GenBank) cardiolipin synthase\tK06131 clsA_B; cardiolipin synthase A\/B [EC:2.7.8.-]" }, { "name":"AAFP32_05670 phospholipase D-like domain-containing protein\tK06131 clsA_B; cardiolipin synthase A\/B [EC:2.7.8.-]" }, { "name":"AAFP32_15225 cls; (GenBank) cardiolipin synthase\tK06131 clsA_B; cardiolipin synthase A\/B [EC:2.7.8.-]" } ] }, { "name":"00565 Ether lipid metabolism" }, { "name":"00600 Sphingolipid metabolism [PATH:bkr00600]", "children":[ { "name":"AAFP32_02335 aminotransferase class V-fold PLP-dependent enzyme\tK01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]" } ] }, { "name":"00590 Arachidonic acid metabolism" }, { "name":"00591 Linoleic acid metabolism" }, { "name":"00592 alpha-Linolenic acid metabolism [PATH:bkr00592]", "children":[ { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" }, { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"01040 Biosynthesis of unsaturated fatty acids [PATH:bkr01040]", "children":[ { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" }, { "name":"AAFP32_07295 acyl-CoA thioesterase II\tK10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.20]" } ] } ] }, { "name":"09104 Nucleotide metabolism", "children":[ { "name":"00230 Purine metabolism [PATH:bkr00230]", "children":[ { "name":"AAFP32_03930 NUDIX hydrolase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" }, { "name":"AAFP32_12340 GNAT family N-acetyltransferase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_05195 ribose-phosphate diphosphokinase\tK00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]" }, { "name":"AAFP32_02605 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"AAFP32_02575 purD; (GenBank) phosphoribosylamine--glycine ligase\tK01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]" }, { "name":"AAFP32_05155 purN; (GenBank) phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"AAFP32_02465 purL; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurL\tK23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]" }, { "name":"AAFP32_02535 purS; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurS\tK23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]" }, { "name":"AAFP32_02530 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"AAFP32_02610 purM; (GenBank) phosphoribosylformylglycinamidine cyclo-ligase\tK01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]" }, { "name":"AAFP32_05960 5-(carboxyamino)imidazole ribonucleotide synthase\tK01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]" }, { "name":"AAFP32_05965 purE; (GenBank) 5-(carboxyamino)imidazole ribonucleotide mutase\tK01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]" }, { "name":"AAFP32_15640 purB; (GenBank) adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"AAFP32_05160 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"AAFP32_11200 adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"AAFP32_03970 HAD-IIA family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"AAFP32_12160 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"AAFP32_09655 pgeF; (GenBank) peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"AAFP32_06435 nucleoside hydrolase\tK01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1]" }, { "name":"AAFP32_04055 hpt; (GenBank) hypoxanthine phosphoribosyltransferase\tK00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]" }, { "name":"AAFP32_12455 GuaB3 family IMP dehydrogenase-related protein\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"AAFP32_12580 guaB; (GenBank) IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"AAFP32_07430 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"AAFP32_05110 rdgB; (GenBank) RdgB\/HAM1 family non-canonical purine NTP pyrophosphatase\tK01519 rdgB; XTP\/dITP diphosphohydrolase [EC:3.6.1.66]" }, { "name":"AAFP32_03210 FAD binding domain-containing protein\tK13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]" }, { "name":"AAFP32_03215 xdhB; (GenBank) xanthine dehydrogenase molybdopterin binding subunit\tK13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]" }, { "name":"AAFP32_12440 guaA; (GenBank) glutamine-hydrolyzing GMP synthase\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"AAFP32_07085 GuaB1 family IMP dehydrogenase-related protein\tK26110 guaB1; GMP reductase [EC:1.7.1.7]" }, { "name":"AAFP32_03225 guaD; (GenBank) guanine deaminase\tK01487 guaD; guanine deaminase [EC:3.5.4.3]" }, { "name":"AAFP32_08920 gmk; (GenBank) guanylate kinase\tK00942 gmk; guanylate kinase [EC:2.7.4.8]" }, { "name":"AAFP32_11850 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"AAFP32_11845 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"AAFP32_09320 deoxyguanosinetriphosphate triphosphohydrolase\tK01129 dgt; dGTPase [EC:3.1.5.1]" }, { "name":"AAFP32_12840 dgt; (GenBank) dGTP triphosphohydrolase\tK01129 dgt; dGTPase [EC:3.1.5.1]" }, { "name":"AAFP32_09060 bifunctional (p)ppGpp synthetase\/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"AAFP32_04235 Ppx\/GppA phosphatase family protein\tK01524 ppx-gppA; exopolyphosphatase \/ guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]" }, { "name":"AAFP32_05265 Ppx\/GppA phosphatase family protein\tK01524 ppx-gppA; exopolyphosphatase \/ guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]" }, { "name":"AAFP32_03020 GTP pyrophosphokinase family protein\tK07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]" }, { "name":"AAFP32_04445 RelA\/SpoT domain-containing protein\tK07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]" }, { "name":"AAFP32_15150 RelA\/SpoT domain-containing protein\tK07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]" }, { "name":"AAFP32_05925 adenylate\/guanylate cyclase domain-containing protein\tK01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]" }, { "name":"AAFP32_02320 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"AAFP32_11615 adenosine deaminase\tK01488 add; adenosine deaminase [EC:3.5.4.4]" }, { "name":"AAFP32_04905 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"AAFP32_09120 HIT domain-containing protein\tK19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]" }, { "name":"AAFP32_03280 pucL; (GenBank) factor-independent urate hydroxylase\tK00365 uaZ; urate oxidase [EC:1.7.3.3]" }, { "name":"AAFP32_03275 uraH; (GenBank) hydroxyisourate hydrolase\tK07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]" }, { "name":"AAFP32_03270 uraD; (GenBank) 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase\tK16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]" }, { "name":"AAFP32_05875 aspartate\/glutamate racemase family protein\tK16841 hpxA; allantoin racemase [EC:5.1.99.3]" }, { "name":"AAFP32_03250 allB; (GenBank) allantoinase AllB\tK01466 allB; allantoinase [EC:3.5.2.5]" }, { "name":"AAFP32_03305 bifunctional allantoicase\/(S)-ureidoglycine aminohydrolase\tK14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]" } ] }, { "name":"00240 Pyrimidine metabolism [PATH:bkr00240]", "children":[ { "name":"AAFP32_08935 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_15030 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_08940 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"AAFP32_08955 aspartate carbamoyltransferase catalytic subunit\tK00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]" }, { "name":"AAFP32_08950 dihydroorotase\tK01465 URA4; dihydroorotase [EC:3.5.2.3]" }, { "name":"AAFP32_08035 quinone-dependent dihydroorotate dehydrogenase\tK00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]" }, { "name":"AAFP32_15075 pyrE; (GenBank) orotate phosphoribosyltransferase\tK00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]" }, { "name":"AAFP32_08930 pyrF; (GenBank) orotidine-5'-phosphate decarboxylase\tK01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]" }, { "name":"AAFP32_10740 pyrH; (GenBank) UMP kinase\tK09903 pyrH; uridylate kinase [EC:2.7.4.22]" }, { "name":"AAFP32_07430 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"AAFP32_06200 Maf family protein\tK06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]" }, { "name":"AAFP32_03960 adenylate\/guanylate cyclase domain-containing protein\tK27603 pycC; uridylate cyclase [EC:4.6.1.26]" }, { "name":"AAFP32_09925 CTP synthase\tK01937 pyrG; CTP synthase [EC:6.3.4.2]" }, { "name":"AAFP32_09885 cmk; (GenBank) (d)CMP kinase\tK00945 cmk; CMP\/dCMP kinase [EC:2.7.4.25]" }, { "name":"AAFP32_03100 udk; (GenBank) uridine kinase\tK00876 udk; uridine kinase [EC:2.7.1.48]" }, { "name":"AAFP32_03970 HAD-IIA family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"AAFP32_03185 upp; (GenBank) uracil phosphoribosyltransferase\tK00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"AAFP32_08960 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator\/uracil phosphoribosyltransferase PyrR\tK02825 pyrR; pyrimidine operon attenuation protein \/ uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"AAFP32_12180 cytidine deaminase\tK01489 cdd; cytidine deaminase [EC:3.5.4.5]" }, { "name":"AAFP32_15530 dcd; (GenBank) dCTP deaminase\tK01494 dcd; dCTP deaminase [EC:3.5.4.13]" }, { "name":"AAFP32_11850 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"AAFP32_11845 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" }, { "name":"AAFP32_09530 dut; (GenBank) dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"AAFP32_12175 thymidine phosphorylase\tK00758 deoA; thymidine phosphorylase [EC:2.4.2.4]" }, { "name":"AAFP32_06475 thymidine kinase\tK00857 tdk; thymidine kinase [EC:2.7.1.21]" }, { "name":"AAFP32_06755 thymidine kinase\tK00857 tdk; thymidine kinase [EC:2.7.1.21]" }, { "name":"AAFP32_11070 thyX; (GenBank) FAD-dependent thymidylate synthase\tK03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]" }, { "name":"AAFP32_01080 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_01130 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_11405 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_16145 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" } ] } ] }, { "name":"09105 Amino acid metabolism", "children":[ { "name":"00250 Alanine, aspartate and glutamate metabolism [PATH:bkr00250]", "children":[ { "name":"AAFP32_12485 nadB; (GenBank) L-aspartate oxidase\tK00278 nadB; L-aspartate oxidase [EC:1.4.3.16]" }, { "name":"AAFP32_01850 amino acid racemase\tK01779 racD; aspartate racemase [EC:5.1.1.13]" }, { "name":"AAFP32_14805 asparaginase domain-containing protein\tK01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]" }, { "name":"AAFP32_16010 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"AAFP32_07965 ald; (GenBank) alanine dehydrogenase\tK00259 ald; alanine dehydrogenase [EC:1.4.1.1]" }, { "name":"AAFP32_00965 aspartate ammonia-lyase\tK01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]" }, { "name":"AAFP32_14370 argG; (GenBank) argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"AAFP32_10055 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"AAFP32_02320 adenylosuccinate synthase\tK01939 purA; adenylosuccinate synthase [EC:6.3.4.4]" }, { "name":"AAFP32_15640 purB; (GenBank) adenylosuccinate lyase\tK01756 purB; adenylosuccinate lyase [EC:4.3.2.2]" }, { "name":"AAFP32_08955 aspartate carbamoyltransferase catalytic subunit\tK00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_00170 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_01985 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13450 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13525 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_15665 succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_16475 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_08805 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"AAFP32_08800 glutamate synthase subunit beta\tK00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]" }, { "name":"AAFP32_06155 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"AAFP32_10575 Glu\/Leu\/Phe\/Val dehydrogenase dimerization domain-containing protein\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"AAFP32_05065 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"AAFP32_03090 bifunctional proline dehydrogenase\/L-glutamate gamma-semialdehyde dehydrogenase\tK13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor \/ proline dehydrogenase \/ delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_08935 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_15030 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_08940 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"AAFP32_11420 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"AAFP32_02530 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"AAFP32_12360 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"AAFP32_02605 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" } ] }, { "name":"00260 Glycine, serine and threonine metabolism [PATH:bkr00260]", "children":[ { "name":"AAFP32_03680 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"AAFP32_03685 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"AAFP32_07135 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"AAFP32_07145 thrB; (GenBank) homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"AAFP32_07140 thrC; (GenBank) threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"AAFP32_11575 beta-eliminating lyase-related protein\tK01620 ltaE; threonine aldolase [EC:4.1.2.48]" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_03265 glycerate kinase\tK00865 glxK; glycerate 2-kinase [EC:2.7.1.165]" }, { "name":"AAFP32_13975 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"AAFP32_11130 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"AAFP32_13620 serC; (GenBank) phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"AAFP32_08555 serB; (GenBank) phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" }, { "name":"AAFP32_02760 primary-amine oxidase\tK00276 AOC3; primary-amine oxidase [EC:1.4.3.21]" }, { "name":"AAFP32_01470 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"AAFP32_01475 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_01480 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_09790 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_00235 aminopeptidase P family protein\tK08688 E3.5.3.3; creatinase [EC:3.5.3.3]" }, { "name":"AAFP32_10000 GMC oxidoreductase\tK17755 codA; choline oxidase [EC:1.1.3.17]" }, { "name":"AAFP32_02570 aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"AAFP32_09995 aldehyde dehydrogenase family protein\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"AAFP32_12220 homocysteine S-methyltransferase family protein\tK00544 BHMT; betaine-homocysteine S-methyltransferase [EC:2.1.1.5]" }, { "name":"AAFP32_00455 aromatic ring-hydroxylating dioxygenase subunit alpha\tK00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251]" }, { "name":"AAFP32_16055 aromatic ring-hydroxylating dioxygenase subunit alpha\tK00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251]" }, { "name":"AAFP32_00460 iron-sulfur cluster-binding domain-containing protein\tK21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251]" }, { "name":"AAFP32_16050 2Fe-2S iron-sulfur cluster-binding protein\tK21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251]" }, { "name":"AAFP32_00465 FAD-dependent oxidoreductase\tK00309 dmg; dimethylglycine oxidase [EC:1.5.3.10]" }, { "name":"AAFP32_00265 glycine cleavage T C-terminal barrel domain-containing protein\tK00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]" }, { "name":"AAFP32_00255 sarcosine oxidase subunit beta family protein\tK00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1]" }, { "name":"AAFP32_00270 sarcosine oxidase subunit gamma family protein\tK00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1]" }, { "name":"AAFP32_00260 sarcosine oxidase subunit delta\tK00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1]" }, { "name":"AAFP32_01485 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"AAFP32_00315 threonine\/serine dehydratase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"AAFP32_14500 ilvA; (GenBank) threonine ammonia-lyase IlvA\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"AAFP32_16085 D-serine ammonia-lyase\tK01753 dsdA; D-serine dehydratase [EC:4.3.1.18]" }, { "name":"AAFP32_08815 trpA; (GenBank) tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"AAFP32_08820 trpB; (GenBank) tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"AAFP32_01495 ectB; (GenBank) diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"AAFP32_01490 ectA; (GenBank) diaminobutyrate acetyltransferase\tK06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]" }, { "name":"AAFP32_01500 ectoine synthase\tK06720 ectC; L-ectoine synthase [EC:4.2.1.108]" }, { "name":"AAFP32_12575 pyridoxal-dependent decarboxylase\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" }, { "name":"AAFP32_09345 M24 family metallopeptidase\tK15783 doeA; ectoine hydrolase [EC:3.5.4.44]" }, { "name":"AAFP32_14620 succinylglutamate desuccinylase\/aspartoacylase family protein\tK15784 doeB; N2-acetyl-L-2,4-diaminobutanoate deacetylase [EC:3.5.1.125]" } ] }, { "name":"00270 Cysteine and methionine metabolism [PATH:bkr00270]", "children":[ { "name":"AAFP32_11265 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"AAFP32_11270 cysK; (GenBank) cysteine synthase A\tK01738 cysK; cysteine synthase [EC:2.5.1.47]" }, { "name":"AAFP32_12220 homocysteine S-methyltransferase family protein\tK00544 BHMT; betaine-homocysteine S-methyltransferase [EC:2.1.1.5]" }, { "name":"AAFP32_03330 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"AAFP32_02455 cobalamin-independent methionine synthase II family protein\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"AAFP32_08905 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"AAFP32_03620 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" }, { "name":"AAFP32_09655 pgeF; (GenBank) peptidoglycan editing factor PgeF\tK05810 LACC1; purine-nucleoside\/S-methyl-5'-thioadenosine phosphorylase \/ adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]" }, { "name":"AAFP32_07865 PLP-dependent aspartate aminotransferase family protein\tK01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]" }, { "name":"AAFP32_00885 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"AAFP32_06040 ahcY; (GenBank) adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"AAFP32_00160 1-aminocyclopropane-1-carboxylate deaminase\tK01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]" }, { "name":"AAFP32_03680 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"AAFP32_03685 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"AAFP32_07135 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"AAFP32_07145 thrB; (GenBank) homoserine kinase\tK00872 thrB; homoserine kinase [EC:2.7.1.39]" }, { "name":"AAFP32_08465 homoserine O-acetyltransferase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"AAFP32_14285 alpha\/beta fold hydrolase\tK00641 metX; homoserine O-acetyltransferase\/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]" }, { "name":"AAFP32_13495 PLP-dependent aspartate aminotransferase family protein\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"AAFP32_14850 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"AAFP32_08470 PLP-dependent transferase\tK01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]" }, { "name":"AAFP32_11110 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"AAFP32_06560 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_12245 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_01845 D-cysteine desulfhydrase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"AAFP32_05555 D-cysteine desulfhydrase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"AAFP32_00530 PLP-dependent cysteine synthase family protein\tK28981 cds1; L-cysteine desulfidase [EC:4.4.1.28]" }, { "name":"AAFP32_13005 malate dehydrogenase\tK00024 mdh; malate dehydrogenase [EC:1.1.1.37]" }, { "name":"AAFP32_01485 L-serine ammonia-lyase\tK01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]" }, { "name":"AAFP32_11130 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"AAFP32_13620 serC; (GenBank) phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" } ] }, { "name":"00280 Valine, leucine and isoleucine degradation [PATH:bkr00280]", "children":[ { "name":"AAFP32_11110 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"AAFP32_00200 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_15620 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_00195 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_15615 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_00190 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_15610 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_02035 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_02160 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_02165 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_05460 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_10560 acyl-CoA dehydrogenase family protein\tK00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]" }, { "name":"AAFP32_03895 acyl-CoA dehydrogenase family protein\tK11410 acdH; short-chain 2-methylacyl-CoA dehydrogenase [EC:1.3.8.5]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_06195 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_11510 biotin carboxylase N-terminal domain-containing protein\tK11263 bccA; acetyl-CoA\/propionyl-CoA\/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]" }, { "name":"AAFP32_05915 acyl-CoA carboxylase subunit beta\tK27094 accD5; propionyl-CoA\/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]" }, { "name":"AAFP32_15560 mmsB; (GenBank) 3-hydroxyisobutyrate dehydrogenase\tK00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_03890 acetyl-CoA carboxylase biotin carboxylase subunit\tK01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]" }, { "name":"AAFP32_03885 carboxyl transferase domain-containing protein\tK01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]" }, { "name":"AAFP32_00570 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"AAFP32_05995 CoA transferase subunit A\tK01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]" }, { "name":"AAFP32_05990 CoA transferase subunit B\tK01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]" }, { "name":"AAFP32_01710 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_05375 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" } ] }, { "name":"00290 Valine, leucine and isoleucine biosynthesis [PATH:bkr00290]", "children":[ { "name":"AAFP32_00315 threonine\/serine dehydratase\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"AAFP32_14500 ilvA; (GenBank) threonine ammonia-lyase IlvA\tK01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]" }, { "name":"AAFP32_10975 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit\tK01703 leuC; 3-isopropylmalate\/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"AAFP32_10970 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit\tK01704 leuD; 3-isopropylmalate\/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]" }, { "name":"AAFP32_11115 3-isopropylmalate dehydrogenase\tK00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]" }, { "name":"AAFP32_02895 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_05530 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10310 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10565 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11170 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11910 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_16140 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11165 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11160 ilvC; (GenBank) ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"AAFP32_11240 ilvD; (GenBank) dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"AAFP32_11110 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"AAFP32_16010 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"AAFP32_09380 leuA; (GenBank) 2-isopropylmalate synthase\tK01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]" } ] }, { "name":"00300 Lysine biosynthesis [PATH:bkr00300]", "children":[ { "name":"AAFP32_07135 homoserine dehydrogenase\tK00003 hom; homoserine dehydrogenase [EC:1.1.1.3]" }, { "name":"AAFP32_03680 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"AAFP32_03685 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"AAFP32_10520 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"AAFP32_11435 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"AAFP32_10545 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" }, { "name":"AAFP32_06840 dapD; (GenBank) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase\tK00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]" }, { "name":"AAFP32_10070 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"AAFP32_07040 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]" }, { "name":"AAFP32_06845 dapE; (GenBank) succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"AAFP32_10425 dapF; (GenBank) diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"AAFP32_07130 lysA; (GenBank) diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_14120 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_15025 hypothetical protein\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_02315 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"AAFP32_02650 PLP-dependent aminotransferase family protein\tK05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]" }, { "name":"AAFP32_09700 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"AAFP32_09695 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" } ] }, { "name":"00310 Lysine degradation [PATH:bkr00310]", "children":[ { "name":"AAFP32_04155 aldehyde dehydrogenase family protein\tK26061 amaB; L-aminoadipate-semialdehyde dehydrogenase" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_02795 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_10705 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_00170 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_01985 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13450 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13525 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_15665 succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_16475 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00220 Arginine biosynthesis [PATH:bkr00220]", "children":[ { "name":"AAFP32_10065 argF; (GenBank) ornithine carbamoyltransferase\tK00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]" }, { "name":"AAFP32_14370 argG; (GenBank) argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"AAFP32_10055 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"AAFP32_11420 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"AAFP32_02530 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_08935 carB; (GenBank) carbamoyl-phosphate synthase large subunit\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_15030 ATP-grasp domain-containing protein\tK01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]" }, { "name":"AAFP32_08940 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit\tK01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]" }, { "name":"AAFP32_06155 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"AAFP32_10575 Glu\/Leu\/Phe\/Val dehydrogenase dimerization domain-containing protein\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"AAFP32_05065 gdhA; (GenBank) NADP-specific glutamate dehydrogenase\tK00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]" }, { "name":"AAFP32_16010 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"AAFP32_04120 amino-acid N-acetyltransferase\tK00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]" }, { "name":"AAFP32_10080 argJ; (GenBank) bifunctional glutamate N-acetyltransferase\/amino-acid acetyltransferase ArgJ\tK00620 argJ; glutamate N-acetyltransferase \/ amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]" }, { "name":"AAFP32_06820 GNAT family N-acetyltransferase\tK22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]" }, { "name":"AAFP32_10075 argB; (GenBank) acetylglutamate kinase\tK00930 argB; acetylglutamate kinase [EC:2.7.2.8]" }, { "name":"AAFP32_10085 argC; (GenBank) N-acetyl-gamma-glutamyl-phosphate reductase\tK00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]" }, { "name":"AAFP32_10070 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"AAFP32_05735 ArgE\/DapE family deacylase\tK01438 argE; acetylornithine deacetylase [EC:3.5.1.16]" }, { "name":"AAFP32_16280 argE; (GenBank) acetylornithine deacetylase\tK01438 argE; acetylornithine deacetylase [EC:3.5.1.16]" } ] }, { "name":"00330 Arginine and proline metabolism [PATH:bkr00330]", "children":[ { "name":"AAFP32_00750 hydantoinase\/oxoprolinase family protein\tK01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]" }, { "name":"AAFP32_15985 hydantoinase\/oxoprolinase family protein\tK01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]" }, { "name":"AAFP32_00745 hydantoinase B\/oxoprolinase family protein\tK01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]" }, { "name":"AAFP32_15980 hydantoinase B\/oxoprolinase family protein\tK01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]" }, { "name":"AAFP32_00235 aminopeptidase P family protein\tK08688 E3.5.3.3; creatinase [EC:3.5.3.3]" }, { "name":"AAFP32_00280 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK01585 speA; arginine decarboxylase [EC:4.1.1.19]" }, { "name":"AAFP32_16020 aminotransferase class V-fold PLP-dependent enzyme\tK01585 speA; arginine decarboxylase [EC:4.1.1.19]" }, { "name":"AAFP32_15215 agmatine deiminase family protein\tK10536 aguA; agmatine deiminase [EC:3.5.3.12]" }, { "name":"AAFP32_03620 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" }, { "name":"AAFP32_08230 NAD(P)\/FAD-dependent oxidoreductase\tK03343 puo; putrescine oxidase [EC:1.4.3.10]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_11905 speB; (GenBank) agmatinase\tK25365 gbh; guanidinobutyrase \/ D-arginase [EC:3.5.3.7 3.5.3.10]" }, { "name":"AAFP32_03585 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08195 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_14660 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_15930 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_04260 proC; (GenBank) pyrroline-5-carboxylate reductase\tK00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]" }, { "name":"AAFP32_12810 NAD(P)-binding domain-containing protein\tK00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]" }, { "name":"AAFP32_03090 bifunctional proline dehydrogenase\/L-glutamate gamma-semialdehyde dehydrogenase\tK13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor \/ proline dehydrogenase \/ delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]" }, { "name":"AAFP32_07475 proB; (GenBank) glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"AAFP32_07480 glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" }, { "name":"AAFP32_14415 proline racemase family protein\tK01777 prdF; proline racemase [EC:5.1.1.4]" }, { "name":"AAFP32_16045 proline racemase family protein\tK01777 prdF; proline racemase [EC:5.1.1.4]" } ] }, { "name":"00340 Histidine metabolism [PATH:bkr00340]", "children":[ { "name":"AAFP32_08870 hisG; (GenBank) ATP phosphoribosyltransferase\tK00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]" }, { "name":"AAFP32_08875 phosphoribosyl-ATP diphosphatase\tK01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]" }, { "name":"AAFP32_08845 hisI; (GenBank) phosphoribosyl-AMP cyclohydrolase\tK01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]" }, { "name":"AAFP32_10365 priA; (GenBank) bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase\/phosphoribosylanthranilate isomerase PriA\tK24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]" }, { "name":"AAFP32_10370 hisH; (GenBank) imidazole glycerol phosphate synthase subunit HisH\tK02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]" }, { "name":"AAFP32_08850 hisF; (GenBank) imidazole glycerol phosphate synthase subunit HisF\tK02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]" }, { "name":"AAFP32_10380 hisB; (GenBank) imidazoleglycerol-phosphate dehydratase HisB\tK01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]" }, { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_07045 inositol monophosphatase family protein\tK05602 hisN; histidinol-phosphatase [EC:3.1.3.15]" }, { "name":"AAFP32_09620 hisD; (GenBank) histidinol dehydrogenase\tK00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]" }, { "name":"AAFP32_01125 hutH; (GenBank) histidine ammonia-lyase\tK01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]" }, { "name":"AAFP32_01110 hutU; (GenBank) urocanate hydratase\tK01712 hutU; urocanate hydratase [EC:4.2.1.49]" }, { "name":"AAFP32_01120 hutI; (GenBank) imidazolonepropionase\tK01468 hutI; imidazolonepropionase [EC:3.5.2.7]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_11025 aldehyde dehydrogenase family protein\tK00129 ALDH3; aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5]" } ] }, { "name":"00350 Tyrosine metabolism [PATH:bkr00350]", "children":[ { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_02760 primary-amine oxidase\tK00276 AOC3; primary-amine oxidase [EC:1.4.3.21]" }, { "name":"AAFP32_11025 aldehyde dehydrogenase family protein\tK00129 ALDH3; aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5]" }, { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_03140 hpaE; (GenBank) 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase\tK00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]" }, { "name":"AAFP32_03150 fumarylacetoacetate hydrolase family protein\tK02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]" }, { "name":"AAFP32_00640 aldolase\/citrate lyase family protein\tK02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]" }, { "name":"AAFP32_03155 aldolase\/citrate lyase family protein\tK02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]" }, { "name":"AAFP32_00170 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_01985 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13450 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13525 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_15665 succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_16475 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" } ] }, { "name":"00360 Phenylalanine metabolism [PATH:bkr00360]", "children":[ { "name":"AAFP32_02760 primary-amine oxidase\tK00276 AOC3; primary-amine oxidase [EC:1.4.3.21]" }, { "name":"AAFP32_11025 aldehyde dehydrogenase family protein\tK00129 ALDH3; aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5]" }, { "name":"AAFP32_00335 paaK; (GenBank) phenylacetate--CoA ligase PaaK\tK01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]" }, { "name":"AAFP32_00340 paaI; (GenBank) hydroxyphenylacetyl-CoA thioesterase PaaI\tK02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]" }, { "name":"AAFP32_00345 paaA; (GenBank) 1,2-phenylacetyl-CoA epoxidase subunit PaaA\tK02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]" }, { "name":"AAFP32_00350 paaB; (GenBank) 1,2-phenylacetyl-CoA epoxidase subunit PaaB\tK02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB" }, { "name":"AAFP32_00355 paaC; (GenBank) 1,2-phenylacetyl-CoA epoxidase subunit PaaC\tK02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]" }, { "name":"AAFP32_00360 paaD; (GenBank) 1,2-phenylacetyl-CoA epoxidase subunit PaaD\tK02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD" }, { "name":"AAFP32_00365 paaE; (GenBank) 1,2-phenylacetyl-CoA epoxidase subunit PaaE\tK02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE" }, { "name":"AAFP32_00325 paaZ; (GenBank) phenylacetic acid degradation bifunctional protein PaaZ\tK02618 paaZ; oxepin-CoA hydrolase \/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_00380 3-hydroxyacyl-CoA dehydrogenase family protein\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_08160 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_14425 FAD-dependent oxidoreductase\tK00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]" }, { "name":"AAFP32_04770 katG; (GenBank) catalase\/peroxidase HPI\tK03782 katG; catalase-peroxidase [EC:1.11.1.21]" }, { "name":"AAFP32_03585 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08195 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_14660 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_15930 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08620 non-heme iron oxygenase ferredoxin subunit\tK05710 hcaC; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin component" }, { "name":"AAFP32_01655 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"AAFP32_07565 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" } ] }, { "name":"00380 Tryptophan metabolism [PATH:bkr00380]", "children":[ { "name":"AAFP32_13790 tryptophan 2,3-dioxygenase family protein\tK00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]" }, { "name":"AAFP32_15810 kynU; (GenBank) kynureninase\tK01556 KYNU; kynureninase [EC:3.7.1.3]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_02795 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_10705 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_00740 carbon-nitrogen hydrolase family protein\tK01501 E3.5.5.1; nitrilase [EC:3.5.5.1]" }, { "name":"AAFP32_03585 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08195 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_14660 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_15930 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_02695 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"AAFP32_04770 katG; (GenBank) catalase\/peroxidase HPI\tK03782 katG; catalase-peroxidase [EC:1.11.1.21]" } ] }, { "name":"00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bkr00400]", "children":[ { "name":"AAFP32_09775 3-deoxy-7-phosphoheptulonate synthase class II\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"AAFP32_08975 aroB; (GenBank) 3-dehydroquinate synthase\tK01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]" }, { "name":"AAFP32_15420 type I 3-dehydroquinate dehydratase\tK03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]" }, { "name":"AAFP32_08980 shikimate kinase\tK00891 aroK; shikimate kinase [EC:2.7.1.71]" }, { "name":"AAFP32_07055 aroA; (GenBank) 3-phosphoshikimate 1-carboxyvinyltransferase\tK00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]" }, { "name":"AAFP32_08985 aroC; (GenBank) chorismate synthase\tK01736 aroC; chorismate synthase [EC:4.2.3.5]" }, { "name":"AAFP32_08840 trpE; (GenBank) anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"AAFP32_08115 trpD; (GenBank) anthranilate phosphoribosyltransferase\tK00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]" }, { "name":"AAFP32_10365 priA; (GenBank) bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase\/phosphoribosylanthranilate isomerase PriA\tK24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]" }, { "name":"AAFP32_08825 trpC; (GenBank) indole-3-glycerol phosphate synthase TrpC\tK01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]" }, { "name":"AAFP32_08815 trpA; (GenBank) tryptophan synthase subunit alpha\tK01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]" }, { "name":"AAFP32_08820 trpB; (GenBank) tryptophan synthase subunit beta\tK01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]" }, { "name":"AAFP32_07455 chorismate mutase\tK04092 tyrA1; chorismate mutase [EC:5.4.99.5]" }, { "name":"AAFP32_09890 prephenate dehydrogenase\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"AAFP32_15165 pheA; (GenBank) prephenate dehydratase\tK04518 pheA2; prephenate dehydratase [EC:4.2.1.51]" }, { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" } ] } ] }, { "name":"09106 Metabolism of other amino acids", "children":[ { "name":"00410 beta-Alanine metabolism [PATH:bkr00410]", "children":[ { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_02885 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"AAFP32_14405 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"AAFP32_02760 primary-amine oxidase\tK00276 AOC3; primary-amine oxidase [EC:1.4.3.21]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_11025 aldehyde dehydrogenase family protein\tK00129 ALDH3; aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5]" }, { "name":"AAFP32_12470 panC; (GenBank) pantoate--beta-alanine ligase\tK01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]" }, { "name":"AAFP32_01080 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_01130 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_11405 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_16145 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" } ] }, { "name":"00430 Taurine and hypotaurine metabolism [PATH:bkr00430]", "children":[ { "name":"AAFP32_00520 gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"AAFP32_07965 ald; (GenBank) alanine dehydrogenase\tK00259 ald; alanine dehydrogenase [EC:1.4.1.1]" }, { "name":"AAFP32_02885 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"AAFP32_14405 aspartate aminotransferase family protein\tK15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]" }, { "name":"AAFP32_06155 NAD-glutamate dehydrogenase\tK15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]" }, { "name":"AAFP32_10225 xsc; (GenBank) sulfoacetaldehyde acetyltransferase\tK03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]" }, { "name":"AAFP32_10200 phosphotransacetylase\tK00625 pta; phosphate acetyltransferase [EC:2.3.1.8]" } ] }, { "name":"00440 Phosphonate and phosphinate metabolism [PATH:bkr00440]", "children":[ { "name":"AAFP32_00675 TIGR03364 family FAD-dependent oxidoreductase\tK27877 pbfD; 2-(methylaminoethyl)phosphonate oxidase [EC:1.5.3.27]" } ] }, { "name":"00450 Selenocompound metabolism [PATH:bkr00450]", "children":[ { "name":"AAFP32_13495 PLP-dependent aspartate aminotransferase family protein\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"AAFP32_14850 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]" }, { "name":"AAFP32_02455 cobalamin-independent methionine synthase II family protein\tK00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]" }, { "name":"AAFP32_07865 PLP-dependent aspartate aminotransferase family protein\tK01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]" }, { "name":"AAFP32_08610 SufS family cysteine desulfurase\tK11717 sufS; cysteine desulfurase \/ selenocysteine lyase [EC:2.8.1.7 4.4.1.16]" }, { "name":"AAFP32_16355 trxB; (GenBank) thioredoxin-disulfide reductase\tK00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]" }, { "name":"AAFP32_16180 selD; (GenBank) selenide, water dikinase SelD\tK01008 selD; selenide, water dikinase [EC:2.7.9.3]" }, { "name":"AAFP32_16160 selA; (GenBank) L-seryl-tRNA(Sec) selenium transferase\tK01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]" }, { "name":"AAFP32_12650 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" } ] }, { "name":"00460 Cyanoamino acid metabolism [PATH:bkr00460]", "children":[ { "name":"AAFP32_07580 family 1 glycosylhydrolase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" }, { "name":"AAFP32_00740 carbon-nitrogen hydrolase family protein\tK01501 E3.5.5.1; nitrilase [EC:3.5.5.1]" }, { "name":"AAFP32_00520 gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"AAFP32_14805 asparaginase domain-containing protein\tK01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_01330 fmdA; (GenBank) formamidase\tK01455 fmdA; formamidase [EC:3.5.1.49]" } ] }, { "name":"00470 D-Amino acid metabolism [PATH:bkr00470]", "children":[ { "name":"AAFP32_12315 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"AAFP32_10945 D-alanine--D-alanine ligase family protein\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"AAFP32_11420 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"AAFP32_02530 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ\tK23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ \/ glutaminase [EC:6.3.5.3 3.5.1.2]" }, { "name":"AAFP32_01260 aspartate\/glutamate racemase family protein\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"AAFP32_09685 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"AAFP32_01850 amino acid racemase\tK01779 racD; aspartate racemase [EC:5.1.1.13]" }, { "name":"AAFP32_16085 D-serine ammonia-lyase\tK01753 dsdA; D-serine dehydratase [EC:4.3.1.18]" }, { "name":"AAFP32_01845 D-cysteine desulfhydrase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"AAFP32_05555 D-cysteine desulfhydrase\tK05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]" }, { "name":"AAFP32_10425 dapF; (GenBank) diaminopimelate epimerase\tK01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]" }, { "name":"AAFP32_07130 lysA; (GenBank) diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_14120 diaminopimelate decarboxylase\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_15025 hypothetical protein\tK01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]" }, { "name":"AAFP32_11905 speB; (GenBank) agmatinase\tK25365 gbh; guanidinobutyrase \/ D-arginase [EC:3.5.3.7 3.5.3.10]" }, { "name":"AAFP32_14415 proline racemase family protein\tK01777 prdF; proline racemase [EC:5.1.1.4]" }, { "name":"AAFP32_16045 proline racemase family protein\tK01777 prdF; proline racemase [EC:5.1.1.4]" }, { "name":"AAFP32_14425 FAD-dependent oxidoreductase\tK00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]" } ] }, { "name":"00480 Glutathione metabolism [PATH:bkr00480]", "children":[ { "name":"AAFP32_00520 gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" }, { "name":"AAFP32_11495 5-oxoprolinase subunit PxpA\tK07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]" }, { "name":"AAFP32_12265 glutamate--cysteine ligase\tK06048 gshA; glutamate---cysteine ligase \/ carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]" }, { "name":"AAFP32_08030 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"AAFP32_07320 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"AAFP32_14030 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"AAFP32_06750 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"AAFP32_03620 polyamine aminopropyltransferase\tK00797 speE; spermidine synthase [EC:2.5.1.16]" } ] } ] }, { "name":"09107 Glycan biosynthesis and metabolism", "children":[ { "name":"00520 Amino sugar and nucleotide sugar metabolism [PATH:bkr00520]", "children":[ { "name":"AAFP32_14265 anhydro-N-acetylmuramic acid kinase\tK09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]" }, { "name":"AAFP32_14255 murQ; (GenBank) N-acetylmuramic acid 6-phosphate etherase\tK07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]" }, { "name":"AAFP32_05190 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"AAFP32_01725 wecB; (GenBank) UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"AAFP32_07225 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_10965 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_04645 UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"AAFP32_12255 glycoside hydrolase family 3 N-terminal domain-containing protein\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"AAFP32_15470 amidohydrolase family protein\tK01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]" }, { "name":"AAFP32_12380 glmM; (GenBank) phosphoglucosamine mutase\tK03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]" }, { "name":"AAFP32_02225 nagB; (GenBank) glucosamine-6-phosphate deaminase\tK02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]" }, { "name":"AAFP32_12360 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"AAFP32_06425 carbohydrate kinase\tK00847 E2.7.1.4; fructokinase [EC:2.7.1.4]" }, { "name":"AAFP32_08680 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"AAFP32_05985 manA; (GenBank) mannose-6-phosphate isomerase, class I\tK01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]" }, { "name":"AAFP32_07950 ppgK; (GenBank) polyphosphate--glucose phosphotransferase\tK00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]" }, { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_01715 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_13550 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_09255 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"AAFP32_12825 galE; (GenBank) UDP-glucose 4-epimerase GalE\tK01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]" }, { "name":"AAFP32_06035 manB; (GenBank) phosphomannomutase\/phosphoglucomutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"AAFP32_12165 phospho-sugar mutase\tK01840 manB; phosphomannomutase [EC:5.4.2.8]" }, { "name":"AAFP32_11630 mannose-1-phosphate guanylyltransferase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" } ] }, { "name":"00541 Biosynthesis of various nucleotide sugars [PATH:bkr00541]", "children":[ { "name":"AAFP32_05190 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase\/glucosamine-1-phosphate N-acetyltransferase GlmU\tK04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase \/ glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]" }, { "name":"AAFP32_12755 N-acetylneuraminate synthase family protein\tK01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]" }, { "name":"AAFP32_01725 wecB; (GenBank) UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"AAFP32_01720 wecC; (GenBank) UDP-N-acetyl-D-mannosamine dehydrogenase\tK02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]" }, { "name":"AAFP32_01715 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_13550 galU; (GenBank) UTP--glucose-1-phosphate uridylyltransferase GalU\tK00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]" }, { "name":"AAFP32_09255 UDP-glucose\/GDP-mannose dehydrogenase family protein\tK00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]" }, { "name":"AAFP32_11630 mannose-1-phosphate guanylyltransferase\tK00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]" } ] }, { "name":"00510 N-Glycan biosynthesis" }, { "name":"00513 Various types of N-glycan biosynthesis" }, { "name":"00512 Mucin type O-glycan biosynthesis" }, { "name":"00515 Mannose type O-glycan biosynthesis [PATH:bkr00515]", "children":[ { "name":"AAFP32_12745 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" } ] }, { "name":"00514 Other types of O-glycan biosynthesis [PATH:bkr00514]", "children":[ { "name":"AAFP32_12745 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" } ] }, { "name":"00532 Glycosaminoglycan biosynthesis - chondroitin sulfate \/ dermatan sulfate" }, { "name":"00534 Glycosaminoglycan biosynthesis - heparan sulfate \/ heparin" }, { "name":"00533 Glycosaminoglycan biosynthesis - keratan sulfate" }, { "name":"00531 Glycosaminoglycan degradation" }, { "name":"00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis" }, { "name":"00601 Glycosphingolipid biosynthesis - lacto and neolacto series" }, { "name":"00603 Glycosphingolipid biosynthesis - globo and isoglobo series" }, { "name":"00604 Glycosphingolipid biosynthesis - ganglio series" }, { "name":"00511 Other glycan degradation" }, { "name":"00540 Lipopolysaccharide biosynthesis" }, { "name":"00542 O-Antigen repeat unit biosynthesis [PATH:bkr00542]", "children":[ { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"00550 Peptidoglycan biosynthesis [PATH:bkr00550]", "children":[ { "name":"AAFP32_07225 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_10965 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_04645 UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"AAFP32_09670 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"AAFP32_09685 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"AAFP32_09700 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"AAFP32_10945 D-alanine--D-alanine ligase family protein\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"AAFP32_09695 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"AAFP32_09370 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"AAFP32_08410 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"AAFP32_09690 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"AAFP32_09675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"AAFP32_00020 FtsW\/RodA\/SpoVE family cell cycle protein\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09680 ftsW; (GenBank) putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09705 penicillin-binding protein 2\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"AAFP32_00015 penicillin-binding transpeptidase domain-containing protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"AAFP32_11655 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"AAFP32_04030 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" } ] }, { "name":"00552 Teichoic acid biosynthesis [PATH:bkr00552]", "children":[ { "name":"AAFP32_08410 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"00571 Lipoarabinomannan (LAM) biosynthesis" }, { "name":"00572 Arabinogalactan biosynthesis - Mycobacterium", "children":[ { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"00543 Exopolysaccharide biosynthesis [PATH:bkr00543]", "children":[ { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_11265 cysE; (GenBank) serine O-acetyltransferase\tK00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]" }, { "name":"AAFP32_02255 glycosyltransferase family 2 protein\tK16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]" } ] } ] }, { "name":"09108 Metabolism of cofactors and vitamins", "children":[ { "name":"00730 Thiamine metabolism [PATH:bkr00730]", "children":[ { "name":"AAFP32_12530 thiD; (GenBank) bifunctional hydroxymethylpyrimidine kinase\/phosphomethylpyrimidine kinase\tK00941 thiD; hydroxymethylpyrimidine\/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]" }, { "name":"AAFP32_11325 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_12495 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_06505 thiO; (GenBank) glycine oxidase ThiO\tK03153 thiO; glycine oxidase [EC:1.4.3.19]" }, { "name":"AAFP32_09465 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"AAFP32_06495 thiazole synthase\tK03149 thiG; thiazole synthase [EC:2.8.1.10]" }, { "name":"AAFP32_12540 thiM; (GenBank) hydroxyethylthiazole kinase\tK00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]" }, { "name":"AAFP32_06510 thiE; (GenBank) thiamine phosphate synthase\tK00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]" }, { "name":"AAFP32_12535 thiE; (GenBank) thiamine phosphate synthase\tK00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]" }, { "name":"AAFP32_10930 thiL; (GenBank) thiamine-phosphate kinase\tK00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]" }, { "name":"AAFP32_07050 rsgA; (GenBank) ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"AAFP32_04905 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"AAFP32_02675 TenA family protein\tK03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]" }, { "name":"AAFP32_12525 TenA family protein\tK03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]" } ] }, { "name":"00740 Riboflavin metabolism [PATH:bkr00740]", "children":[ { "name":"AAFP32_14760 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase\tK14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase \/ GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]" }, { "name":"AAFP32_14750 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"AAFP32_14765 ribH; (GenBank) 6,7-dimethyl-8-ribityllumazine synthase\tK00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]" }, { "name":"AAFP32_14755 riboflavin synthase\tK00793 ribE; riboflavin synthase [EC:2.5.1.9]" }, { "name":"AAFP32_10600 bifunctional riboflavin kinase\/FAD synthetase\tK11753 ribF; riboflavin kinase \/ FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]" }, { "name":"AAFP32_11255 NAD(P)H-dependent oxidoreductase\tK00299 ssuE; FMN reductase [EC:1.5.1.38]" }, { "name":"AAFP32_13280 NADPH-dependent FMN reductase\tK00299 ssuE; FMN reductase [EC:1.5.1.38]" }, { "name":"AAFP32_12540 thiM; (GenBank) hydroxyethylthiazole kinase\tK00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]" }, { "name":"AAFP32_03930 NUDIX hydrolase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" }, { "name":"AAFP32_12340 GNAT family N-acetyltransferase\tK01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]" } ] }, { "name":"00750 Vitamin B6 metabolism [PATH:bkr00750]", "children":[ { "name":"AAFP32_13615 pdxH; (GenBank) pyridoxamine 5'-phosphate oxidase\tK00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]" }, { "name":"AAFP32_08505 PfkB family carbohydrate kinase\tK00868 pdxK; pyridoxine kinase [EC:2.7.1.35]" }, { "name":"AAFP32_13620 serC; (GenBank) phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" }, { "name":"AAFP32_07140 thrC; (GenBank) threonine synthase\tK01733 thrC; threonine synthase [EC:4.2.3.1]" }, { "name":"AAFP32_06725 pdxS; (GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS\tK06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]" }, { "name":"AAFP32_06720 pdxT; (GenBank) pyridoxal 5'-phosphate synthase glutaminase subunit PdxT\tK08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]" } ] }, { "name":"00760 Nicotinate and nicotinamide metabolism [PATH:bkr00760]", "children":[ { "name":"AAFP32_12485 nadB; (GenBank) L-aspartate oxidase\tK00278 nadB; L-aspartate oxidase [EC:1.4.3.16]" }, { "name":"AAFP32_13435 aspartate dehydrogenase domain-containing protein\tK06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]" }, { "name":"AAFP32_12480 nadA; (GenBank) quinolinate synthase NadA\tK03517 nadA; quinolinate synthase [EC:2.5.1.72]" }, { "name":"AAFP32_12490 nadC; (GenBank) carboxylating nicotinate-nucleotide diphosphorylase\tK00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]" }, { "name":"AAFP32_05085 nicotinate phosphoribosyltransferase\tK00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]" }, { "name":"AAFP32_12160 purine-nucleoside phosphorylase\tK03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]" }, { "name":"AAFP32_03970 HAD-IIA family hydrolase\tK02566 nagD; 5'-nucleotidase [EC:3.1.3.5]" }, { "name":"AAFP32_07490 nadD; (GenBank) nicotinate-nucleotide adenylyltransferase\tK00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]" }, { "name":"AAFP32_06970 nudC; (GenBank) NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"AAFP32_09265 nadE; (GenBank) ammonia-dependent NAD(+) synthetase\tK01916 nadE; NAD+ synthase [EC:6.3.1.5]" }, { "name":"AAFP32_10465 CinA family protein\tK03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]" }, { "name":"AAFP32_14350 isochorismatase family protein\tK08281 pncA; nicotinamidase\/pyrazinamidase [EC:3.5.1.19 3.5.1.-]" }, { "name":"AAFP32_09965 NAD kinase\tK00858 ppnK; NAD+ kinase [EC:2.7.1.23]" }, { "name":"AAFP32_00170 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_01985 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13450 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_13525 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_15665 succinic semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" }, { "name":"AAFP32_16475 NAD-dependent succinate-semialdehyde dehydrogenase\tK00135 gabD; succinate-semialdehyde dehydrogenase \/ glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]" } ] }, { "name":"00770 Pantothenate and CoA biosynthesis [PATH:bkr00770]", "children":[ { "name":"AAFP32_02895 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_05530 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10310 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_10565 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11170 acetolactate synthase large subunit\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11910 thiamine pyrophosphate-binding protein\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_16140 thiamine pyrophosphate-dependent enzyme\tK01652 E2.2.1.6L; acetolactate synthase I\/II\/III large subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11165 ilvN; (GenBank) acetolactate synthase small subunit\tK01653 E2.2.1.6S; acetolactate synthase I\/III small subunit [EC:2.2.1.6]" }, { "name":"AAFP32_11160 ilvC; (GenBank) ketol-acid reductoisomerase\tK00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]" }, { "name":"AAFP32_11240 ilvD; (GenBank) dihydroxy-acid dehydratase\tK01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]" }, { "name":"AAFP32_12475 panB; (GenBank) 3-methyl-2-oxobutanoate hydroxymethyltransferase\tK00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]" }, { "name":"AAFP32_06515 2-dehydropantoate 2-reductase\tK00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]" }, { "name":"AAFP32_12470 panC; (GenBank) pantoate--beta-alanine ligase\tK01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]" }, { "name":"AAFP32_12365 coaA; (GenBank) type I pantothenate kinase\tK00867 coaA; type I pantothenate kinase [EC:2.7.1.33]" }, { "name":"AAFP32_08910 coaBC; (GenBank) bifunctional phosphopantothenoylcysteine decarboxylase\/phosphopantothenate--cysteine ligase CoaBC\tK13038 coaBC; phosphopantothenoylcysteine decarboxylase \/ phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]" }, { "name":"AAFP32_10880 coaD; (GenBank) pantetheine-phosphate adenylyltransferase\tK00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]" }, { "name":"AAFP32_08750 coaE; (GenBank) dephospho-CoA kinase\tK00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]" }, { "name":"AAFP32_12355 holo-ACP synthase\tK00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]" }, { "name":"AAFP32_06740 4'-phosphopantetheinyl transferase superfamily protein\tK06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]" }, { "name":"AAFP32_11110 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"AAFP32_01080 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_01130 allantoate amidohydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_11405 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_16145 M20 family metallo-hydrolase\tK06016 pydC; beta-ureidopropionase \/ N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00780 Biotin metabolism [PATH:bkr00780]", "children":[ { "name":"AAFP32_00180 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_07820 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_01445 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08445 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08570 beta-ketoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_09840 SDR family oxidoreductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_15265 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_07915 bioB; (GenBank) biotin synthase BioB\tK01012 bioB; biotin synthase [EC:2.8.1.6]" }, { "name":"AAFP32_05920 biotin--[acetyl-CoA-carboxylase] ligase\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" } ] }, { "name":"00785 Lipoic acid metabolism [PATH:bkr00785]", "children":[ { "name":"AAFP32_08010 lipB; (GenBank) lipoyl(octanoyl) transferase LipB\tK03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]" }, { "name":"AAFP32_08005 lipoyl synthase\tK03644 lipA; lipoyl synthase [EC:2.8.1.8]" }, { "name":"AAFP32_03830 lipoate--protein ligase family protein\tK16869 lipL; lipoyl-[GcvH]:protein N-lipoyltransferase [EC:2.3.1.204]" }, { "name":"AAFP32_11080 biotin\/lipoate A\/B protein ligase family protein\tK03800 lplA; lipoate---protein ligase [EC:6.3.1.20]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_00165 pyruvate dehydrogenase\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_03285 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_07845 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type\tK00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]" }, { "name":"AAFP32_08020 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase\tK00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]" }, { "name":"AAFP32_07080 multifunctional oxoglutarate decarboxylase\/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit\/dihydrolipoyllysine-residue succinyltransferase subunit\tK01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]" }, { "name":"AAFP32_00200 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_15620 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha\tK00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]" }, { "name":"AAFP32_00195 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_15615 alpha-ketoacid dehydrogenase subunit beta\tK00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]" }, { "name":"AAFP32_00190 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_15610 dihydrolipoamide acetyltransferase family protein\tK09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]" }, { "name":"AAFP32_01470 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"AAFP32_01475 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"AAFP32_01480 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_09790 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" } ] }, { "name":"00790 Folate biosynthesis [PATH:bkr00790]", "children":[ { "name":"AAFP32_04065 folE; (GenBank) GTP cyclohydrolase I FolE\tK01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]" }, { "name":"AAFP32_04075 folK; (GenBank) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase\tK13940 sulD; dihydroneopterin aldolase \/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]" }, { "name":"AAFP32_04070 folP; (GenBank) dihydropteroate synthase\tK00796 folP; dihydropteroate synthase [EC:2.5.1.15]" }, { "name":"AAFP32_07420 Mur ligase family protein\tK11754 folC; dihydrofolate synthase \/ folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]" }, { "name":"AAFP32_14760 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase\tK14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase \/ GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]" }, { "name":"AAFP32_16565 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein\tK01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]" }, { "name":"AAFP32_15405 aminotransferase class IV\tK02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]" }, { "name":"AAFP32_08190 4a-hydroxytetrahydrobiopterin dehydratase\tK01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]" }, { "name":"AAFP32_07725 moaA; (GenBank) GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"AAFP32_07735 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"AAFP32_07740 molybdenum cofactor biosynthesis protein MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"AAFP32_07710 molybdopterin molybdotransferase MoeA\tK03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]" }, { "name":"AAFP32_07730 molybdopterin molybdotransferase MoeA\tK03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]" } ] }, { "name":"00670 One carbon pool by folate [PATH:bkr00670]", "children":[ { "name":"AAFP32_12820 formate--tetrahydrofolate ligase\tK01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]" }, { "name":"AAFP32_04980 bifunctional methylenetetrahydrofolate dehydrogenase\/methenyltetrahydrofolate cyclohydrolase\tK01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) \/ methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_05155 purN; (GenBank) phosphoribosylglycinamide formyltransferase\tK11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]" }, { "name":"AAFP32_05160 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"AAFP32_01475 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT\tK00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]" }, { "name":"AAFP32_11070 thyX; (GenBank) FAD-dependent thymidylate synthase\tK03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]" }, { "name":"AAFP32_00275 purU; (GenBank) formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"AAFP32_04970 purU; (GenBank) formyltetrahydrofolate deformylase\tK01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]" }, { "name":"AAFP32_01310 methylenetetrahydrofolate reductase\tK00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]" }, { "name":"AAFP32_13555 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"AAFP32_03330 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" }, { "name":"AAFP32_12220 homocysteine S-methyltransferase family protein\tK00544 BHMT; betaine-homocysteine S-methyltransferase [EC:2.1.1.5]" }, { "name":"AAFP32_08905 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"AAFP32_06040 ahcY; (GenBank) adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"AAFP32_00465 FAD-dependent oxidoreductase\tK00309 dmg; dimethylglycine oxidase [EC:1.5.3.10]" }, { "name":"AAFP32_01470 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase\tK00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_01480 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_09790 gcvH; (GenBank) glycine cleavage system protein GcvH\tK02437 gcvH; glycine cleavage system H protein" }, { "name":"AAFP32_10000 GMC oxidoreductase\tK17755 codA; choline oxidase [EC:1.1.3.17]" }, { "name":"AAFP32_02570 aminobutyraldehyde dehydrogenase\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" }, { "name":"AAFP32_09995 aldehyde dehydrogenase family protein\tK00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]" } ] }, { "name":"00830 Retinol metabolism" }, { "name":"00860 Porphyrin metabolism [PATH:bkr00860]", "children":[ { "name":"AAFP32_07770 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_11010 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_04315 hemA; (GenBank) glutamyl-tRNA reductase\tK02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]" }, { "name":"AAFP32_04335 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"AAFP32_04325 hemB; (GenBank) porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"AAFP32_09450 hemE; (GenBank) uroporphyrinogen decarboxylase\tK01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]" }, { "name":"AAFP32_09445 hemG; (GenBank) protoporphyrinogen oxidase\tK00231 PPOX; protoporphyrinogen\/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]" }, { "name":"AAFP32_09550 ferrochelatase\tK01772 hemH; protoporphyrin\/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]" }, { "name":"AAFP32_09440 hemQ; (GenBank) hydrogen peroxide-dependent heme synthase\tK00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]" }, { "name":"AAFP32_04320 uroporphyrinogen-III synthase\tK13542 cobA-hemD; uroporphyrinogen III methyltransferase \/ synthase [EC:2.1.1.107 4.2.1.75]" }, { "name":"AAFP32_08665 heme o synthase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"AAFP32_08650 COX15\/CtaA family protein\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"AAFP32_10215 AAA family ATPase\tK09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]" }, { "name":"AAFP32_10210 cobalt chelatase\tK09883 cobT; cobaltochelatase CobT [EC:6.6.1.2]" }, { "name":"AAFP32_12290 biliverdin-producing heme oxygenase\tK21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]" } ] }, { "name":"00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bkr00130]", "children":[ { "name":"AAFP32_04420 demethylmenaquinone methyltransferase\tK03183 ubiE; demethylmenaquinone methyltransferase \/ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]" }, { "name":"AAFP32_04415 isochorismate synthase\tK02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]" }, { "name":"AAFP32_04405 thiamine pyrophosphate-binding protein\tK02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]" }, { "name":"AAFP32_04390 o-succinylbenzoate synthase\tK02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]" }, { "name":"AAFP32_15375 menC; (GenBank) o-succinylbenzoate synthase\tK02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]" }, { "name":"AAFP32_04380 AMP-binding protein\tK01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]" }, { "name":"AAFP32_04385 1,4-dihydroxy-2-naphthoyl-CoA synthase\tK01661 menB; naphthoate synthase [EC:4.1.3.36]" }, { "name":"AAFP32_04375 1,4-dihydroxy-2-naphthoate polyprenyltransferase\tK02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]" } ] } ] }, { "name":"09109 Metabolism of terpenoids and polyketides", "children":[ { "name":"00900 Terpenoid backbone biosynthesis [PATH:bkr00900]", "children":[ { "name":"AAFP32_09465 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase\tK01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]" }, { "name":"AAFP32_10700 dxr; (GenBank) 1-deoxy-D-xylulose-5-phosphate reductoisomerase\tK00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]" }, { "name":"AAFP32_13935 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase\tK00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]" }, { "name":"AAFP32_12230 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase\tK00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]" }, { "name":"AAFP32_13930 ispF; (GenBank) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase\tK01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]" }, { "name":"AAFP32_10685 ispG; (GenBank) flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase\tK03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]" }, { "name":"AAFP32_06280 4-hydroxy-3-methylbut-2-enyl diphosphate reductase\tK03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_13115 idi; (GenBank) isopentenyl-diphosphate Delta-isomerase\tK01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]" }, { "name":"AAFP32_13120 polyprenyl synthetase family protein\tK13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"AAFP32_09755 polyprenyl synthetase family protein\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"AAFP32_06240 isoprenyl transferase\tK12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]" }, { "name":"AAFP32_09370 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" } ] }, { "name":"00902 Monoterpenoid biosynthesis" }, { "name":"00909 Sesquiterpenoid and triterpenoid biosynthesis" }, { "name":"00904 Diterpenoid biosynthesis" }, { "name":"00906 Carotenoid biosynthesis [PATH:bkr00906]", "children":[ { "name":"AAFP32_13140 FAD-dependent oxidoreductase\tK09879 crtU; carotenoid phi-ring synthase \/ carotenoid chi-ring synthase [EC:1.3.99.39 1.3.99.40]" } ] }, { "name":"00905 Brassinosteroid biosynthesis" }, { "name":"00981 Insect hormone biosynthesis" }, { "name":"00908 Zeatin biosynthesis" }, { "name":"00903 Limonene degradation", "children":[ { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" } ] }, { "name":"00907 Pinene, camphor and geraniol degradation [PATH:bkr00907]", "children":[ { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_01115 NAD(P)-dependent oxidoreductase\tK13775 atuG; citronellol\/citronellal dehydrogenase" }, { "name":"AAFP32_01695 acyl-CoA dehydrogenase family protein\tK11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"AAFP32_00570 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"01052 Type I polyketide structures" }, { "name":"00522 Biosynthesis of 12-, 14- and 16-membered macrolides" }, { "name":"01051 Biosynthesis of ansamycins", "children":[ { "name":"AAFP32_08670 tkt; (GenBank) transketolase\tK00615 E2.2.1.1; transketolase [EC:2.2.1.1]" } ] }, { "name":"01059 Biosynthesis of enediyne antibiotics" }, { "name":"01056 Biosynthesis of type II polyketide backbone" }, { "name":"01057 Biosynthesis of type II polyketide products [PATH:bkr01057]", "children":[ { "name":"AAFP32_13460 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK05556 actVI1; ketoreductase RED1 [EC:1.1.1.-]" } ] }, { "name":"00253 Tetracycline biosynthesis" }, { "name":"00523 Polyketide sugar unit biosynthesis" }, { "name":"01054 Nonribosomal peptide structures [PATH:bkr01054]", "children":[ { "name":"AAFP32_01850 amino acid racemase\tK01779 racD; aspartate racemase [EC:5.1.1.13]" } ] }, { "name":"01053 Biosynthesis of siderophore group nonribosomal peptides", "children":[ { "name":"AAFP32_04415 isochorismate synthase\tK02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]" } ] }, { "name":"01055 Biosynthesis of vancomycin group antibiotics" } ] }, { "name":"09110 Biosynthesis of other secondary metabolites", "children":[ { "name":"00940 Phenylpropanoid biosynthesis" }, { "name":"00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis" }, { "name":"00941 Flavonoid biosynthesis" }, { "name":"00944 Flavone and flavonol biosynthesis" }, { "name":"00942 Anthocyanin biosynthesis" }, { "name":"00943 Isoflavonoid biosynthesis" }, { "name":"00946 Degradation of flavonoids [PATH:bkr00946]", "children":[ { "name":"AAFP32_07580 family 1 glycosylhydrolase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" } ] }, { "name":"00901 Indole alkaloid biosynthesis" }, { "name":"00403 Indole diterpene alkaloid biosynthesis" }, { "name":"00950 Isoquinoline alkaloid biosynthesis" }, { "name":"00960 Tropane, piperidine and pyridine alkaloid biosynthesis" }, { "name":"00996 Biosynthesis of various alkaloids" }, { "name":"00232 Caffeine metabolism", "children":[ { "name":"AAFP32_03280 pucL; (GenBank) factor-independent urate hydroxylase\tK00365 uaZ; urate oxidase [EC:1.7.3.3]" } ] }, { "name":"00965 Betalain biosynthesis" }, { "name":"00966 Glucosinolate biosynthesis" }, { "name":"00402 Benzoxazinoid biosynthesis" }, { "name":"00311 Penicillin and cephalosporin biosynthesis [PATH:bkr00311]", "children":[ { "name":"AAFP32_14475 C45 family peptidase\tK19200 IAL; isopenicillin-N N-acyltransferase like protein" }, { "name":"AAFP32_09410 penicillin acylase family protein\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"AAFP32_14080 serine hydrolase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" } ] }, { "name":"00332 Carbapenem biosynthesis [PATH:bkr00332]", "children":[ { "name":"AAFP32_07475 proB; (GenBank) glutamate 5-kinase\tK00931 proB; glutamate 5-kinase [EC:2.7.2.11]" }, { "name":"AAFP32_07480 glutamate-5-semialdehyde dehydrogenase\tK00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]" } ] }, { "name":"00261 Monobactam biosynthesis [PATH:bkr00261]", "children":[ { "name":"AAFP32_03680 aspartate kinase\tK00928 lysC; aspartate kinase [EC:2.7.2.4]" }, { "name":"AAFP32_03685 aspartate-semialdehyde dehydrogenase\tK00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]" }, { "name":"AAFP32_10520 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"AAFP32_11435 dihydrodipicolinate synthase family protein\tK01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]" }, { "name":"AAFP32_10545 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase\tK00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]" } ] }, { "name":"00331 Clavulanic acid biosynthesis" }, { "name":"00521 Streptomycin biosynthesis [PATH:bkr00521]", "children":[ { "name":"AAFP32_01625 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)\tK01835 pgm; phosphoglucomutase [EC:5.4.2.2]" }, { "name":"AAFP32_05350 inositol-3-phosphate synthase\tK01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]" }, { "name":"AAFP32_01400 inositol monophosphatase family protein\tK01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]" }, { "name":"AAFP32_10655 aminoglycoside phosphotransferase family protein\tK04343 strB; streptomycin 6-kinase [EC:2.7.1.72]" } ] }, { "name":"00524 Neomycin, kanamycin and gentamicin biosynthesis" }, { "name":"00525 Acarbose and validamycin biosynthesis" }, { "name":"00401 Novobiocin biosynthesis [PATH:bkr00401]", "children":[ { "name":"AAFP32_09890 prephenate dehydrogenase\tK04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]" }, { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" } ] }, { "name":"00404 Staurosporine biosynthesis" }, { "name":"00405 Phenazine biosynthesis", "children":[ { "name":"AAFP32_08840 trpE; (GenBank) anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" } ] }, { "name":"00333 Prodigiosin biosynthesis", "children":[ { "name":"AAFP32_07835 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"AAFP32_01445 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08445 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08570 beta-ketoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_09840 SDR family oxidoreductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_15265 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" } ] }, { "name":"00254 Aflatoxin biosynthesis" }, { "name":"00975 Biosynthesis of various siderophores [PATH:bkr00975]", "children":[ { "name":"AAFP32_12570 SidA\/IucD\/PvdA family monooxygenase\tK27501 alcA; putrescine\/cadaverine\/1,3-diaminopropane N-hydroxylase [EC:1.14.13.252 1.14.13.-]" }, { "name":"AAFP32_01495 ectB; (GenBank) diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"AAFP32_12575 pyridoxal-dependent decarboxylase\tK13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]" } ] }, { "name":"00998 Biosynthesis of various antibiotics [PATH:bkr00998]", "children":[ { "name":"AAFP32_07825 acyl carrier protein\tK02078 acpP; acyl carrier protein" }, { "name":"AAFP32_14450 FAD\/NAD(P)-binding protein\tK25562 creE; L-aspartate N-monooxygenase (nitrosuccinate-forming) [EC:1.14.13.248]" } ] }, { "name":"00999 Biosynthesis of various plant secondary metabolites [PATH:bkr00999]", "children":[ { "name":"AAFP32_08905 metK; (GenBank) methionine adenosyltransferase\tK00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]" }, { "name":"AAFP32_07580 family 1 glycosylhydrolase\tK05350 bglB; beta-glucosidase [EC:3.2.1.21]" } ] }, { "name":"00997 Biosynthesis of various other secondary metabolites", "children":[ { "name":"AAFP32_09755 polyprenyl synthetase family protein\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" } ] } ] }, { "name":"09111 Xenobiotics biodegradation and metabolism", "children":[ { "name":"00362 Benzoate degradation [PATH:bkr00362]", "children":[ { "name":"AAFP32_06760 alpha\/beta fold hydrolase\tK01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]" }, { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_02965 pcaG; (GenBank) protocatechuate 3,4-dioxygenase subunit alpha\tK00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]" }, { "name":"AAFP32_02970 pcaH; (GenBank) protocatechuate 3,4-dioxygenase subunit beta\tK00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]" }, { "name":"AAFP32_02960 lyase family protein\tK01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]" }, { "name":"AAFP32_02950 pcaC; (GenBank) 4-carboxymuconolactone decarboxylase\tK01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]" }, { "name":"AAFP32_01655 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"AAFP32_07565 FAD-dependent oxidoreductase\tK00529 hcaD; 3-phenylpropionate\/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]" }, { "name":"AAFP32_02975 4-hydroxybenzoate 3-monooxygenase\tK00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]" }, { "name":"AAFP32_15050 acyl-CoA dehydrogenase family protein\tK04118 pimC; pimeloyl-CoA dehydrogenase large subunit [EC:1.3.1.62]" }, { "name":"AAFP32_15055 acyl-CoA dehydrogenase family protein\tK28556 pimD; pimeloyl-CoA dehydrogenase small subunit [EC:1.3.1.62]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" }, { "name":"AAFP32_02795 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_10705 acyl-CoA dehydrogenase family protein\tK00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_00380 3-hydroxyacyl-CoA dehydrogenase family protein\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_08160 3-hydroxybutyryl-CoA dehydrogenase\tK00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" } ] }, { "name":"00627 Aminobenzoate degradation [PATH:bkr00627]", "children":[ { "name":"AAFP32_03585 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08195 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_14660 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_15930 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_00740 carbon-nitrogen hydrolase family protein\tK01501 E3.5.5.1; nitrilase [EC:3.5.5.1]" }, { "name":"AAFP32_13330 mdlC; (GenBank) benzoylformate decarboxylase\tK01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7]" }, { "name":"AAFP32_03040 benzaldehyde dehydrogenase\tK00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]" }, { "name":"AAFP32_03120 FAD-binding monooxygenase\tK03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]" }, { "name":"AAFP32_14630 aromatic ring-hydroxylating dioxygenase subunit alpha\tK03862 vanA; vanillate monooxygenase [EC:1.14.13.82]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" } ] }, { "name":"00364 Fluorobenzoate degradation" }, { "name":"00625 Chloroalkane and chloroalkene degradation [PATH:bkr00625]", "children":[ { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_02585 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_13755 aldehyde dehydrogenase family protein\tK00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]" }, { "name":"AAFP32_00445 fdhA; (GenBank) formaldehyde dehydrogenase, glutathione-independent\tK00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]" } ] }, { "name":"00361 Chlorocyclohexane and chlorobenzene degradation" }, { "name":"00623 Toluene degradation [PATH:bkr00623]", "children":[ { "name":"AAFP32_03120 FAD-binding monooxygenase\tK03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]" }, { "name":"AAFP32_03040 benzaldehyde dehydrogenase\tK00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]" } ] }, { "name":"00622 Xylene degradation [PATH:bkr00622]", "children":[ { "name":"AAFP32_03040 benzaldehyde dehydrogenase\tK00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]" } ] }, { "name":"00633 Nitrotoluene degradation" }, { "name":"00642 Ethylbenzene degradation", "children":[ { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" } ] }, { "name":"00643 Styrene degradation [PATH:bkr00643]", "children":[ { "name":"AAFP32_03585 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_08195 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_14660 amidase\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_15930 amidase family protein\tK01426 E3.5.1.4; amidase [EC:3.5.1.4]" }, { "name":"AAFP32_00740 carbon-nitrogen hydrolase family protein\tK01501 E3.5.5.1; nitrilase [EC:3.5.5.1]" }, { "name":"AAFP32_02065 CoA-transferase\tK01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12]" }, { "name":"AAFP32_02070 CoA-transferase\tK01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]" } ] }, { "name":"00791 Atrazine degradation" }, { "name":"00930 Caprolactam degradation [PATH:bkr00930]", "children":[ { "name":"AAFP32_01450 acyl-CoA dehydrogenase family protein\tK06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-]" }, { "name":"AAFP32_05020 enoyl-CoA hydratase\tK01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]" }, { "name":"AAFP32_03870 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase \/ enoyl-CoA hydratase \/ 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]" } ] }, { "name":"00363 Bisphenol degradation" }, { "name":"00621 Dioxin degradation" }, { "name":"00626 Naphthalene degradation [PATH:bkr00626]", "children":[ { "name":"AAFP32_04690 adhP; (GenBank) alcohol dehydrogenase AdhP\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_11055 alcohol dehydrogenase catalytic domain-containing protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" }, { "name":"AAFP32_14290 zinc-dependent alcohol dehydrogenase family protein\tK13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]" } ] }, { "name":"00624 Polycyclic aromatic hydrocarbon degradation", "children":[ { "name":"AAFP32_02965 pcaG; (GenBank) protocatechuate 3,4-dioxygenase subunit alpha\tK00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]" }, { "name":"AAFP32_02970 pcaH; (GenBank) protocatechuate 3,4-dioxygenase subunit beta\tK00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]" } ] }, { "name":"00365 Furfural degradation" }, { "name":"00984 Steroid degradation [PATH:bkr00984]", "children":[ { "name":"AAFP32_02200 thiolase family protein\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_09835 acetyl-CoA C-acyltransferase\tK00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]" }, { "name":"AAFP32_15740 MaoC family dehydratase\tK28224 scdD; enoyl-CoA hydratase [EC:4.2.1.-]" } ] }, { "name":"00980 Metabolism of xenobiotics by cytochrome P450" }, { "name":"00982 Drug metabolism - cytochrome P450" }, { "name":"00983 Drug metabolism - other enzymes" } ] }, { "name":"09112 Not included in regular maps", "children":[ { "name":"09113 Global maps only" } ] } ] }, { "name":"09120 Genetic Information Processing", "children":[ { "name":"09121 Transcription", "children":[ { "name":"03020 RNA polymerase [PATH:bkr03020]", "children":[ { "name":"AAFP32_04725 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"AAFP32_04730 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"AAFP32_04955 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"AAFP32_08915 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" } ] }, { "name":"03022 Basal transcription factors", "children":[ { "name":"AAFP32_13655 DNA repair helicase XPB\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" } ] }, { "name":"03040 Spliceosome" } ] }, { "name":"09122 Translation", "children":[ { "name":"03010 Ribosome [PATH:bkr03010]", "children":[ { "name":"AAFP32_02480 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_05045 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_10020 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_15785 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_02485 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_05050 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_10015 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_15780 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_08760 rpsA; (GenBank) 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"AAFP32_10750 rpsB; (GenBank) 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"AAFP32_04835 rpsC; (GenBank) 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"AAFP32_09015 rpsD; (GenBank) 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"AAFP32_04885 rpsE; (GenBank) 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"AAFP32_16310 rpsF; (GenBank) 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"AAFP32_04785 rpsG; (GenBank) 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"AAFP32_04870 rpsH; (GenBank) 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"AAFP32_12385 rpsI; (GenBank) 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"AAFP32_04800 rpsJ; (GenBank) 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"AAFP32_04950 rpsK; (GenBank) 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"AAFP32_04780 rpsL; (GenBank) 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"AAFP32_04945 rpsM; (GenBank) 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"AAFP32_15590 rpsN; (GenBank) 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"AAFP32_10595 rpsO; (GenBank) 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"AAFP32_10820 rpsP; (GenBank) 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"AAFP32_04850 rpsQ; (GenBank) 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"AAFP32_16300 rpsR; (GenBank) 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"AAFP32_04825 rpsS; (GenBank) 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"AAFP32_09230 rpsT; (GenBank) 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"AAFP32_04675 rplA; (GenBank) 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"AAFP32_04820 rplB; (GenBank) 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"AAFP32_04805 rplC; (GenBank) 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"AAFP32_04810 rplD; (GenBank) 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"AAFP32_04865 rplE; (GenBank) 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"AAFP32_04875 rplF; (GenBank) 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"AAFP32_16295 rplI; (GenBank) 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"AAFP32_04695 rplJ; (GenBank) 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"AAFP32_04670 rplK; (GenBank) 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"AAFP32_04700 rplL; (GenBank) 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"AAFP32_12390 rplM; (GenBank) 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"AAFP32_04855 rplN; (GenBank) 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"AAFP32_04895 rplO; (GenBank) 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"AAFP32_04840 rplP; (GenBank) 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"AAFP32_04960 rplQ; (GenBank) 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"AAFP32_04880 rplR; (GenBank) 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"AAFP32_10800 rplS; (GenBank) 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"AAFP32_10335 rplT; (GenBank) 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"AAFP32_07460 rplU; (GenBank) 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"AAFP32_04830 rplV; (GenBank) 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"AAFP32_04815 rplW; (GenBank) 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"AAFP32_04860 rplX; (GenBank) 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"AAFP32_05205 50S ribosomal protein L25\/general stress protein Ctc\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"AAFP32_07465 rpmA; (GenBank) 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"AAFP32_15600 rpmB; (GenBank) 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"AAFP32_04890 rpmD; (GenBank) 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"AAFP32_08510 type B 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"AAFP32_10865 rpmF; (GenBank) 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"AAFP32_15595 rpmG; (GenBank) 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"AAFP32_16410 rpmH; (GenBank) 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"AAFP32_10340 rpmI; (GenBank) 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"AAFP32_04940 rpmJ; (GenBank) 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" } ] }, { "name":"00970 Aminoacyl-tRNA biosynthesis [PATH:bkr00970]", "children":[ { "name":"AAFP32_07570 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_07645 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_16455 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_16470 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_07105 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_07260 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_13585 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_14385 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_07785 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"AAFP32_10850 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"AAFP32_02860 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"AAFP32_09145 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"AAFP32_05185 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"AAFP32_11000 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"AAFP32_02865 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"AAFP32_10995 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"AAFP32_04280 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_07350 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_09150 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_11450 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"AAFP32_16450 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"AAFP32_00040 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_05295 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_08435 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_08785 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_11520 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_11480 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"AAFP32_14225 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"AAFP32_04490 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07025 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07030 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07805 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_02855 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"AAFP32_07345 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_07895 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_09795 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_03200 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_03515 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_14440 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_14490 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_03855 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_04485 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_13835 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_04655 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"AAFP32_04460 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"AAFP32_07905 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_09135 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_09140 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_16165 tRNA-Sec\tK14238 tRNA-Sec; tRNA Sec" }, { "name":"AAFP32_07770 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_11010 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_01090 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_01855 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_05135 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11290 gatA; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatA\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11285 gatB; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatB\tK02434 gatB; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11295 gatC; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatC\tK02435 gatC; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_09010 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"AAFP32_09030 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"AAFP32_09360 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"AAFP32_09125 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"AAFP32_14530 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"AAFP32_16160 selA; (GenBank) L-seryl-tRNA(Sec) selenium transferase\tK01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]" }, { "name":"AAFP32_13895 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"AAFP32_12650 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"AAFP32_08895 methionyl-tRNA formyltransferase\tK00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]" }, { "name":"AAFP32_07400 valS; (GenBank) valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"AAFP32_09270 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"AAFP32_07415 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"AAFP32_04100 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"AAFP32_16525 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"AAFP32_10665 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"AAFP32_09040 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"AAFP32_10305 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"AAFP32_10300 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"AAFP32_10030 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"AAFP32_05005 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" } ] }, { "name":"03013 Nucleocytoplasmic transport" }, { "name":"03015 mRNA surveillance pathway" }, { "name":"03008 Ribosome biogenesis in eukaryotes [PATH:bkr03008]", "children":[ { "name":"AAFP32_10860 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"AAFP32_11355 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" } ] } ] }, { "name":"09123 Folding, sorting and degradation", "children":[ { "name":"03060 Protein export [PATH:bkr03060]", "children":[ { "name":"AAFP32_04900 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"AAFP32_04660 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"AAFP32_08685 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"AAFP32_09070 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"AAFP32_09065 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"AAFP32_03460 YidC\/Oxa1 family membrane protein insertase\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_16395 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_06110 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_08280 secA2; (GenBank) accessory Sec system translocase SecA2\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_10825 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"AAFP32_03510 ffs; (GenBank) signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" }, { "name":"AAFP32_10835 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"AAFP32_06365 ArsA family ATPase\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"AAFP32_08295 tatA; (GenBank) Sec-independent protein translocase subunit TatA\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"AAFP32_06885 twin-arginine translocase TatA\/TatE family subunit\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"AAFP32_08290 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" }, { "name":"AAFP32_10790 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"AAFP32_10795 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"AAFP32_09635 signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" } ] }, { "name":"04141 Protein processing in endoplasmic reticulum", "children":[ { "name":"AAFP32_08175 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" } ] }, { "name":"04130 SNARE interactions in vesicular transport" }, { "name":"04120 Ubiquitin mediated proteolysis" }, { "name":"04122 Sulfur relay system [PATH:bkr04122]", "children":[ { "name":"AAFP32_11325 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_12495 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_06560 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_12245 sulfurtransferase\tK01011 TST; thiosulfate\/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]" }, { "name":"AAFP32_11320 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"AAFP32_07740 molybdenum cofactor biosynthesis protein MoaE\tK03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]" }, { "name":"AAFP32_07725 moaA; (GenBank) GTP 3',8-cyclase MoaA\tK03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]" }, { "name":"AAFP32_07720 MoaD\/ThiS family protein\tK03636 moaD; sulfur-carrier protein" }, { "name":"AAFP32_06490 moeB; (GenBank) molybdopterin-synthase adenylyltransferase MoeB\tK21147 moeZR; sulfur-carrier protein adenylyltransferase\/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]" }, { "name":"AAFP32_07715 ThiF family adenylyltransferase\tK21147 moeZR; sulfur-carrier protein adenylyltransferase\/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]" }, { "name":"AAFP32_07735 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC\tK03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]" }, { "name":"AAFP32_06500 thiS; (GenBank) sulfur carrier protein ThiS\tK03154 thiS; sulfur carrier protein" } ] }, { "name":"03050 Proteasome [PATH:bkr03050]", "children":[ { "name":"AAFP32_08355 arc; (GenBank) proteasome ATPase\tK13527 mpa; proteasome-associated ATPase" }, { "name":"AAFP32_08330 prcA; (GenBank) proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"AAFP32_08335 prcB; (GenBank) proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" } ] }, { "name":"03018 RNA degradation [PATH:bkr03018]", "children":[ { "name":"AAFP32_07440 Rne\/Rng family ribonuclease\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"AAFP32_10590 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"AAFP32_09365 DEAD\/DEAH box helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"AAFP32_14675 RecQ family ATP-dependent DNA helicase\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_15790 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_07150 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"AAFP32_10515 ribonuclease J\tK12574 rnj; ribonuclease J [EC:3.1.-.-]" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_14160 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"AAFP32_05305 ppk2; (GenBank) polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" }, { "name":"AAFP32_16330 CCA tRNA nucleotidyltransferase\tK00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]" } ] } ] }, { "name":"09124 Replication and repair", "children":[ { "name":"03030 DNA replication [PATH:bkr03030]", "children":[ { "name":"AAFP32_08120 DEDD exonuclease domain-containing protein\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"AAFP32_09625 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"AAFP32_03660 DNA polymerase III subunit gamma and tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"AAFP32_03840 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"AAFP32_09235 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"AAFP32_16420 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"AAFP32_16245 dnaB; (GenBank) replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"AAFP32_09315 dnaG; (GenBank) DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_10785 ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03410 Base excision repair [PATH:bkr03410]", "children":[ { "name":"AAFP32_03740 nth; (GenBank) endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"AAFP32_13760 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"AAFP32_04125 A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"AAFP32_02735 DNA-formamidopyrimidine glycosylase family protein\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"AAFP32_10855 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase\/DNA-(apurinic or apyrimidinic site) lyase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"AAFP32_07635 Ada metal-binding domain-containing protein\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"AAFP32_13430 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"AAFP32_06480 mismatch-specific DNA-glycosylase\tK03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]" }, { "name":"AAFP32_04990 exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"AAFP32_15135 exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03420 Nucleotide excision repair [PATH:bkr03420]", "children":[ { "name":"AAFP32_05225 mfd; (GenBank) transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"AAFP32_08725 uvrA; (GenBank) excinuclease ABC subunit UvrA\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"AAFP32_11560 ABC transporter\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"AAFP32_08745 uvrB; (GenBank) excinuclease ABC subunit UvrB\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"AAFP32_08720 uvrC; (GenBank) excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"AAFP32_05175 UvrD-helicase domain-containing protein\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06960 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06975 ATP-dependent DNA helicase UvrD2\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"AAFP32_13655 DNA repair helicase XPB\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" } ] }, { "name":"03430 Mismatch repair [PATH:bkr03430]", "children":[ { "name":"AAFP32_05175 UvrD-helicase domain-containing protein\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06960 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06975 ATP-dependent DNA helicase UvrD2\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06275 xseA; (GenBank) exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"AAFP32_06270 exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_09625 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"AAFP32_16420 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"AAFP32_03660 DNA polymerase III subunit gamma and tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"AAFP32_09235 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"AAFP32_03840 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"AAFP32_08120 DEDD exonuclease domain-containing protein\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" } ] }, { "name":"03440 Homologous recombination [PATH:bkr03440]", "children":[ { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16425 recF; (GenBank) DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"AAFP32_09375 recO; (GenBank) DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"AAFP32_03665 recR; (GenBank) recombination mediator RecR\tK06187 recR; recombination protein RecR" }, { "name":"AAFP32_10450 recA; (GenBank) recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_09085 ruvA; (GenBank) Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"AAFP32_09080 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"AAFP32_09100 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"AAFP32_10920 ATP-dependent DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"AAFP32_09625 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"AAFP32_16420 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"AAFP32_03660 DNA polymerase III subunit gamma and tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"AAFP32_09235 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"AAFP32_03840 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"AAFP32_08120 DEDD exonuclease domain-containing protein\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"AAFP32_08900 primosomal protein N'\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" } ] }, { "name":"03450 Non-homologous end-joining [PATH:bkr03450]", "children":[ { "name":"AAFP32_13100 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"AAFP32_13095 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" } ] }, { "name":"03460 Fanconi anemia pathway" } ] }, { "name":"09126 Chromosome", "children":[ { "name":"03082 ATP-dependent chromatin remodeling" }, { "name":"03083 Polycomb repressive complex" } ] }, { "name":"09125 Information processing in viruses", "children":[ { "name":"03230 Viral genome structure" }, { "name":"03240 Viral replication" }, { "name":"03250 Viral life cycle - HIV-1 [PATH:bkr03250]", "children":[ { "name":"AAFP32_16540 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" } ] }, { "name":"03260 Virion - Human immunodeficiency virus" }, { "name":"03271 Virion - Rotavirus" }, { "name":"03262 Virion - Coronavirus" }, { "name":"03261 Virion - Influenza virus" }, { "name":"03263 Virion - Enterovirus" }, { "name":"03264 Virion - Flavivirus and Alphavirus" }, { "name":"03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus" }, { "name":"03273 Virion - Lassa virus and SFTS virus" }, { "name":"03272 Virion - Hepatitis viruses" }, { "name":"03266 Virion - Herpesvirus" }, { "name":"03268 Virion - Orthopoxvirus" }, { "name":"03267 Virion - Adenovirus" }, { "name":"03259 Virion - Bacteriophages T4 and T7" }, { "name":"03258 Virion - Bacteriophage lambda" } ] } ] }, { "name":"09130 Environmental Information Processing", "children":[ { "name":"09131 Membrane transport", "children":[ { "name":"02010 ABC transporters [PATH:bkr02010]", "children":[ { "name":"AAFP32_07750 modA; (GenBank) molybdate ABC transporter substrate-binding protein\tK02020 modA; molybdate transport system substrate-binding protein" }, { "name":"AAFP32_07755 ABC transporter permease\tK02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]" }, { "name":"AAFP32_02555 spermidine\/putrescine ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"AAFP32_02545 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_02550 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_02560 ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"AAFP32_15440 glycine betaine ABC transporter substrate-binding protein\tK02002 proX; glycine betaine\/proline transport system substrate-binding protein" }, { "name":"AAFP32_15435 ABC transporter permease subunit\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"AAFP32_15430 glycine betaine\/L-proline ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"AAFP32_13870 ABC transporter ATP-binding protein\tK10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]" }, { "name":"AAFP32_11620 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"AAFP32_12200 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"AAFP32_12190 ABC transporter permease\tK23535 nupB; general nucleoside transport system permease protein" }, { "name":"AAFP32_12185 ABC transporter permease\tK23536 nupC; general nucleoside transport system permease protein" }, { "name":"AAFP32_12195 ABC transporter ATP-binding protein\tK23537 nupA; general nucleoside transport system ATP-binding protein" }, { "name":"AAFP32_12555 substrate-binding domain-containing protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"AAFP32_12545 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"AAFP32_12550 ATP-binding cassette domain-containing protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"AAFP32_14170 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"AAFP32_14175 pstC; (GenBank) phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"AAFP32_14180 pstA; (GenBank) phosphate ABC transporter permease PstA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"AAFP32_14185 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"AAFP32_00670 PhnD\/SsuA\/transferrin family substrate-binding protein\tK02044 phnD; phosphonate transport system substrate-binding protein" }, { "name":"AAFP32_00655 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE\tK02042 phnE; phosphonate transport system permease protein" }, { "name":"AAFP32_00660 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein\tK02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]" }, { "name":"AAFP32_09845 ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"AAFP32_09850 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09855 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09860 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_09865 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_12805 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"AAFP32_12800 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"AAFP32_12795 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"AAFP32_06785 ABC transporter family substrate-binding protein\tK13889 gsiB; glutathione transport system substrate-binding protein" }, { "name":"AAFP32_11220 ABC transporter family substrate-binding protein\tK13889 gsiB; glutathione transport system substrate-binding protein" }, { "name":"AAFP32_06790 ABC transporter permease\tK13890 gsiC; glutathione transport system permease protein" }, { "name":"AAFP32_11235 ABC transporter permease\tK13890 gsiC; glutathione transport system permease protein" }, { "name":"AAFP32_06795 ABC transporter permease\tK13891 gsiD; glutathione transport system permease protein" }, { "name":"AAFP32_11230 ABC transporter permease\tK13891 gsiD; glutathione transport system permease protein" }, { "name":"AAFP32_11225 ABC transporter ATP-binding protein\tK13892 gsiA; glutathione transport system ATP-binding protein" }, { "name":"AAFP32_16090 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"AAFP32_03500 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_03575 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_06545 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_07010 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_14640 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_15330 ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_03570 iron ABC transporter permease\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"AAFP32_06570 iron chelate uptake ABC transporter family permease subunit\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"AAFP32_03565 iron chelate uptake ABC transporter family permease subunit\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"AAFP32_06575 iron chelate uptake ABC transporter family permease subunit\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"AAFP32_03560 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"AAFP32_06580 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"AAFP32_01210 metal ABC transporter substrate-binding protein\tK11601 mntC; manganese transport system substrate-binding protein" }, { "name":"AAFP32_01200 metal ABC transporter permease\tK11602 mntB; manganese transport system permease protein" }, { "name":"AAFP32_01205 metal ABC transporter ATP-binding protein\tK11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]" }, { "name":"AAFP32_12435 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"AAFP32_12425 energy-coupling factor transporter transmembrane component T\tK16783 bioN; biotin transport system permease protein" }, { "name":"AAFP32_12430 ABC transporter ATP-binding protein\tK16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]" }, { "name":"AAFP32_04190 energy-coupling factor transporter transmembrane component T\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"AAFP32_06445 energy-coupling factor transporter transmembrane component T\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"AAFP32_01660 ABC transporter permease\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"AAFP32_01765 ABC transporter permease\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"AAFP32_01665 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"AAFP32_01770 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"AAFP32_12020 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"AAFP32_12025 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"AAFP32_02515 ABC transporter ATP-binding protein\tK18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"AAFP32_02520 ABC transporter ATP-binding protein\tK18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"AAFP32_09560 cydC; (GenBank) thiol reductant ABC exporter subunit CydC\tK16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD" } ] }, { "name":"02060 Phosphotransferase system (PTS)" }, { "name":"03070 Bacterial secretion system [PATH:bkr03070]", "children":[ { "name":"AAFP32_09070 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"AAFP32_09065 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"AAFP32_04660 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"AAFP32_08685 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"AAFP32_04900 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"AAFP32_03460 YidC\/Oxa1 family membrane protein insertase\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_16395 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_06110 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_08280 secA2; (GenBank) accessory Sec system translocase SecA2\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_10835 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"AAFP32_10825 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"AAFP32_08295 tatA; (GenBank) Sec-independent protein translocase subunit TatA\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"AAFP32_06885 twin-arginine translocase TatA\/TatE family subunit\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"AAFP32_08290 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" } ] } ] }, { "name":"09132 Signal transduction", "children":[ { "name":"02020 Two-component system [PATH:bkr02020]", "children":[ { "name":"AAFP32_13955 ATP-binding protein\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"AAFP32_13950 response regulator transcription factor\tK07776 regX3; two-component system, OmpR family, response regulator RegX3" }, { "name":"AAFP32_14170 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"AAFP32_15490 response regulator transcription factor\tK07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR" }, { "name":"AAFP32_00590 tripartite tricarboxylate transporter permease\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02400 tripartite tricarboxylate transporter permease\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_00585 tripartite tricarboxylate transporter TctB family protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02405 tripartite tricarboxylate transporter TctB family protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_00580 tripartite tricarboxylate transporter substrate-binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02410 tripartite tricarboxylate transporter substrate-binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_08650 COX15\/CtaA family protein\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"AAFP32_13680 trypsin-like peptidase domain-containing protein\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"AAFP32_06085 mtrB; (GenBank) MtrAB system histidine kinase MtrB\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"AAFP32_06080 mtrA; (GenBank) MtrAB system response regulator MtrA\tK07670 mtrA; two-component system, OmpR family, response regulator MtrA" }, { "name":"AAFP32_16415 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"AAFP32_01210 metal ABC transporter substrate-binding protein\tK11601 mntC; manganese transport system substrate-binding protein" }, { "name":"AAFP32_01205 metal ABC transporter ATP-binding protein\tK11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]" }, { "name":"AAFP32_01200 metal ABC transporter permease\tK11602 mntB; manganese transport system permease protein" }, { "name":"AAFP32_03175 endonuclease\/exonuclease\/phosphatase family protein\tK18353 vanJ; vancomycin resistance protein VanJ" }, { "name":"AAFP32_03980 CoA ester lyase\tK01644 citE; citrate lyase subunit beta \/ citryl-CoA lyase [EC:4.1.3.34]" }, { "name":"AAFP32_11120 CoA ester lyase\tK01644 citE; citrate lyase subunit beta \/ citryl-CoA lyase [EC:4.1.3.34]" }, { "name":"AAFP32_02135 NADP-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"AAFP32_03295 NAD-dependent malic enzyme\tK00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]" }, { "name":"AAFP32_15905 histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"AAFP32_15900 response regulator transcription factor\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"AAFP32_03775 TadA family conjugal transfer-associated ATPase\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"AAFP32_12060 ATPase, T2SS\/T4P\/T4SS family\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"AAFP32_03780 type II secretion system F family protein\tK12510 tadB; tight adherence protein B" }, { "name":"AAFP32_12065 type II secretion system F family protein\tK12510 tadB; tight adherence protein B" }, { "name":"AAFP32_03785 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"AAFP32_12070 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_13445 TIGR00366 family protein\tK02106 atoE; short-chain fatty acids transporter" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_00840 DctP family TRAP transporter solute-binding subunit\tK11688 dctP; TRAP-type transport system periplasmic protein" }, { "name":"AAFP32_10275 dctP; (GenBank) TRAP transporter substrate-binding protein DctP\tK11688 dctP; TRAP-type transport system periplasmic protein" }, { "name":"AAFP32_00835 TRAP transporter small permease\tK11689 dctQ; TRAP-type transport system small permease protein" }, { "name":"AAFP32_10285 TRAP transporter small permease\tK11689 dctQ; TRAP-type transport system small permease protein" }, { "name":"AAFP32_00830 TRAP transporter large permease\tK11690 dctM; TRAP-type transport system large permease protein" }, { "name":"AAFP32_10280 TRAP transporter large permease\tK11690 dctM; TRAP-type transport system large permease protein" }, { "name":"AAFP32_03735 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"AAFP32_11420 glutaminase\tK01425 glsA; glutaminase [EC:3.5.1.2]" }, { "name":"AAFP32_09570 cytochrome ubiquinol oxidase subunit I\tK00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]" }, { "name":"AAFP32_09565 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II\tK00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]" }, { "name":"AAFP32_01550 low molecular weight protein-tyrosine-phosphatase\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"AAFP32_15000 low molecular weight phosphatase family protein\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"AAFP32_15010 hypothetical protein\tK25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"AAFP32_01725 wecB; (GenBank) UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)\tK01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]" }, { "name":"AAFP32_01720 wecC; (GenBank) UDP-N-acetyl-D-mannosamine dehydrogenase\tK02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]" } ] }, { "name":"04010 MAPK signaling pathway" }, { "name":"04013 MAPK signaling pathway - fly" }, { "name":"04016 MAPK signaling pathway - plant" }, { "name":"04011 MAPK signaling pathway - yeast" }, { "name":"04012 ErbB signaling pathway" }, { "name":"04014 Ras signaling pathway" }, { "name":"04015 Rap1 signaling pathway" }, { "name":"04310 Wnt signaling pathway" }, { "name":"04330 Notch signaling pathway" }, { "name":"04340 Hedgehog signaling pathway" }, { "name":"04341 Hedgehog signaling pathway - fly" }, { "name":"04350 TGF-beta signaling pathway" }, { "name":"04390 Hippo signaling pathway" }, { "name":"04391 Hippo signaling pathway - fly" }, { "name":"04392 Hippo signaling pathway - multiple species" }, { "name":"04370 VEGF signaling pathway" }, { "name":"04371 Apelin signaling pathway" }, { "name":"04630 JAK-STAT signaling pathway" }, { "name":"04064 NF-kappa B signaling pathway" }, { "name":"04668 TNF signaling pathway" }, { "name":"04066 HIF-1 signaling pathway" }, { "name":"04068 FoxO signaling pathway" }, { "name":"04020 Calcium signaling pathway" }, { "name":"04070 Phosphatidylinositol signaling system" }, { "name":"04072 Phospholipase D signaling pathway" }, { "name":"04071 Sphingolipid signaling pathway" }, { "name":"04024 cAMP signaling pathway" }, { "name":"04022 cGMP-PKG signaling pathway" }, { "name":"04151 PI3K-Akt signaling pathway" }, { "name":"04152 AMPK signaling pathway" }, { "name":"04150 mTOR signaling pathway" }, { "name":"04075 Plant hormone signal transduction" } ] }, { "name":"09133 Signaling molecules and interaction", "children":[ { "name":"04080 Neuroactive ligand-receptor interaction" }, { "name":"04082 Neuroactive ligand signaling" }, { "name":"04081 Hormone signaling" }, { "name":"04060 Cytokine-cytokine receptor interaction" }, { "name":"04061 Viral protein interaction with cytokine and cytokine receptor" }, { "name":"04512 ECM-receptor interaction" }, { "name":"04514 Cell adhesion molecule (CAM) interaction" }, { "name":"04517 IgSF CAM signaling" }, { "name":"04518 Integrin signaling" }, { "name":"04519 Cadherin signaling" } ] } ] }, { "name":"09140 Cellular Processes", "children":[ { "name":"09141 Transport and catabolism", "children":[ { "name":"04144 Endocytosis" }, { "name":"04145 Phagocytosis" }, { "name":"04142 Lysosome biogenesis", "children":[ { "name":"AAFP32_02440 SUMF1\/EgtB\/PvdO family nonheme iron enzyme\tK13444 SUMF1; formylglycine-generating enzyme [EC:1.8.3.7]" } ] }, { "name":"04146 Peroxisome [PATH:bkr04146]", "children":[ { "name":"AAFP32_08460 acyl-CoA dehydrogenase\tK00232 ACOX1_3; acyl-CoA oxidase [EC:1.3.3.6]" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_06970 nudC; (GenBank) NAD(+) diphosphatase\tK03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]" }, { "name":"AAFP32_06750 NADP-dependent isocitrate dehydrogenase\tK00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]" }, { "name":"AAFP32_00570 hydroxymethylglutaryl-CoA lyase\tK01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]" }, { "name":"AAFP32_02695 catalase\tK03781 katE; catalase [EC:1.11.1.6]" }, { "name":"AAFP32_10555 superoxide dismutase\tK04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]" } ] }, { "name":"04149 Peroxisome - yeast" }, { "name":"04140 Autophagy - animal" }, { "name":"04138 Autophagy - yeast" }, { "name":"04136 Autophagy - other" }, { "name":"04137 Mitophagy - animal" }, { "name":"04139 Mitophagy - yeast" }, { "name":"04148 Efferocytosis" } ] }, { "name":"09143 Cell growth and death", "children":[ { "name":"04110 Cell cycle" }, { "name":"04111 Cell cycle - yeast" }, { "name":"04112 Cell cycle - Caulobacter" }, { "name":"04113 Meiosis - yeast" }, { "name":"04114 Oocyte meiosis" }, { "name":"04210 Apoptosis" }, { "name":"04214 Apoptosis - fly" }, { "name":"04215 Apoptosis - multiple species" }, { "name":"04216 Ferroptosis" }, { "name":"04217 Necroptosis" }, { "name":"04115 p53 signaling pathway" }, { "name":"04218 Cellular senescence" }, { "name":"04156 Integrated stress response (ISR) signaling pathway [PATH:bkr04156]", "children":[ { "name":"AAFP32_04490 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07025 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07030 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07805 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" } ] } ] }, { "name":"09144 Cellular community - eukaryotes", "children":[ { "name":"04510 Focal adhesion" }, { "name":"04520 Adherens junction" }, { "name":"04530 Tight junction" }, { "name":"04540 Gap junction" }, { "name":"04550 Signaling pathways regulating pluripotency of stem cells" } ] }, { "name":"09145 Cellular community - prokaryotes", "children":[ { "name":"02024 Quorum sensing [PATH:bkr02024]", "children":[ { "name":"AAFP32_08840 trpE; (GenBank) anthranilate synthase component I\tK01657 trpE; anthranilate synthase component I [EC:4.1.3.27]" }, { "name":"AAFP32_09775 3-deoxy-7-phosphoheptulonate synthase class II\tK01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]" }, { "name":"AAFP32_03080 extracellular solute-binding protein\tK02055 ABC.SP.S; putative spermidine\/putrescine transport system substrate-binding protein" }, { "name":"AAFP32_03070 ABC transporter permease subunit\tK02053 ABC.SP.P; putative spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_03075 spermidine\/putrescine ABC transporter permease\tK02054 ABC.SP.P1; putative spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_03065 ABC transporter ATP-binding protein\tK02052 ABC.SP.A; putative spermidine\/putrescine transport system ATP-binding protein" }, { "name":"AAFP32_09845 ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"AAFP32_09850 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09855 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09860 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_09865 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_03735 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"AAFP32_14750 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase\/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD\tK11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase \/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]" }, { "name":"AAFP32_08425 DMT family transporter\tK09936 TC.BAT2; bacterial\/archaeal transporter family-2 protein" }, { "name":"AAFP32_03435 TIGR04028 family ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_05115 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_05435 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_11150 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_12905 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_14105 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_14905 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_03430 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05120 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05430 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_11145 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_12900 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14100 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14900 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_03425 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05125 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05425 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_11140 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_12895 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14095 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14895 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_03420 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05130 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05420 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_06800 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_11155 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_12890 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_14890 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05415 ATP-binding cassette domain-containing protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_03460 YidC\/Oxa1 family membrane protein insertase\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_16395 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_04660 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"AAFP32_08685 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"AAFP32_04900 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"AAFP32_06110 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_08280 secA2; (GenBank) accessory Sec system translocase SecA2\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_10835 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"AAFP32_10825 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" } ] }, { "name":"05111 Biofilm formation - Vibrio cholerae" }, { "name":"02025 Biofilm formation - Pseudomonas aeruginosa" }, { "name":"02026 Biofilm formation - Escherichia coli" } ] }, { "name":"09142 Cell motility", "children":[ { "name":"02030 Bacterial chemotaxis" }, { "name":"02040 Flagellar assembly", "children":[ { "name":"AAFP32_09595 RNA polymerase sigma factor\tK03086 rpoD; RNA polymerase primary sigma factor" } ] }, { "name":"04814 Motor proteins" }, { "name":"04820 Cytoskeleton in muscle cells", "children":[ { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" } ] }, { "name":"04810 Regulation of actin cytoskeleton" } ] } ] }, { "name":"09150 Organismal Systems", "children":[ { "name":"09151 Immune system", "children":[ { "name":"04640 Hematopoietic cell lineage" }, { "name":"04610 Complement and coagulation cascades" }, { "name":"04611 Platelet activation" }, { "name":"04613 Neutrophil extracellular trap formation" }, { "name":"04620 Toll-like receptor signaling pathway" }, { "name":"04624 Toll and Imd signaling pathway" }, { "name":"04621 NOD-like receptor signaling pathway" }, { "name":"04622 RIG-I-like receptor signaling pathway" }, { "name":"04623 Cytosolic DNA-sensing pathway" }, { "name":"04625 C-type lectin receptor signaling pathway" }, { "name":"04650 Natural killer cell mediated cytotoxicity" }, { "name":"04612 Antigen processing and presentation" }, { "name":"04660 T cell receptor signaling pathway" }, { "name":"04658 Th1 and Th2 cell differentiation" }, { "name":"04659 Th17 cell differentiation" }, { "name":"04657 IL-17 signaling pathway" }, { "name":"04662 B cell receptor signaling pathway" }, { "name":"04664 Fc epsilon RI signaling pathway" }, { "name":"04666 Fc gamma R-mediated phagosome formation" }, { "name":"04670 Leukocyte transendothelial migration" }, { "name":"04672 Intestinal immune network for IgA production" }, { "name":"04062 Chemokine signaling pathway" } ] }, { "name":"09152 Endocrine system", "children":[ { "name":"04911 Insulin secretion" }, { "name":"04910 Insulin signaling pathway" }, { "name":"04922 Glucagon signaling pathway" }, { "name":"04923 Regulation of lipolysis in adipocytes" }, { "name":"04920 Adipocytokine signaling pathway" }, { "name":"03320 PPAR signaling pathway" }, { "name":"04929 GnRH secretion" }, { "name":"04912 GnRH signaling pathway" }, { "name":"04913 Ovarian steroidogenesis" }, { "name":"04915 Estrogen signaling pathway" }, { "name":"04914 Progesterone-mediated oocyte maturation" }, { "name":"04917 Prolactin signaling pathway" }, { "name":"04921 Oxytocin signaling pathway" }, { "name":"04926 Relaxin signaling pathway" }, { "name":"04935 Growth hormone synthesis, secretion and action" }, { "name":"04918 Thyroid hormone synthesis" }, { "name":"04919 Thyroid hormone signaling pathway" }, { "name":"04928 Parathyroid hormone synthesis, secretion and action" }, { "name":"04916 Melanogenesis" }, { "name":"04924 Renin secretion" }, { "name":"04614 Renin-angiotensin system" }, { "name":"04925 Aldosterone synthesis and secretion" }, { "name":"04927 Cortisol synthesis and secretion" } ] }, { "name":"09153 Circulatory system", "children":[ { "name":"04260 Cardiac muscle contraction" }, { "name":"04261 Adrenergic signaling in cardiomyocytes" }, { "name":"04270 Vascular smooth muscle contraction" } ] }, { "name":"09154 Digestive system", "children":[ { "name":"04970 Salivary secretion" }, { "name":"04971 Gastric acid secretion" }, { "name":"04972 Pancreatic secretion" }, { "name":"04976 Bile secretion" }, { "name":"04973 Carbohydrate digestion and absorption" }, { "name":"04974 Protein digestion and absorption" }, { "name":"04975 Fat digestion and absorption" }, { "name":"04979 Cholesterol metabolism" }, { "name":"04977 Vitamin digestion and absorption" }, { "name":"04981 Folate transport and metabolism [PATH:bkr04981]", "children":[ { "name":"AAFP32_13555 5-formyltetrahydrofolate cyclo-ligase\tK01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]" }, { "name":"AAFP32_00250 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_04975 glyA; (GenBank) serine hydroxymethyltransferase\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_14860 beta-eliminating lyase-related protein\tK00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]" }, { "name":"AAFP32_12220 homocysteine S-methyltransferase family protein\tK00544 BHMT; betaine-homocysteine S-methyltransferase [EC:2.1.1.5]" }, { "name":"AAFP32_03330 mmuM; (GenBank) homocysteine S-methyltransferase\tK00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]" } ] }, { "name":"04980 Cobalamin transport and metabolism" }, { "name":"04978 Mineral absorption" } ] }, { "name":"09155 Excretory system", "children":[ { "name":"04962 Vasopressin-regulated water reabsorption" }, { "name":"04960 Aldosterone-regulated sodium reabsorption" }, { "name":"04961 Endocrine and other factor-regulated calcium reabsorption" }, { "name":"04964 Proximal tubule bicarbonate reclamation" }, { "name":"04966 Collecting duct acid secretion" } ] }, { "name":"09156 Nervous system", "children":[ { "name":"04724 Glutamatergic synapse" }, { "name":"04727 GABAergic synapse" }, { "name":"04725 Cholinergic synapse" }, { "name":"04728 Dopaminergic synapse" }, { "name":"04726 Serotonergic synapse" }, { "name":"04720 Long-term potentiation" }, { "name":"04730 Long-term depression" }, { "name":"04723 Retrograde endocannabinoid signaling" }, { "name":"04721 Synaptic vesicle cycle" }, { "name":"04722 Neurotrophin signaling pathway" } ] }, { "name":"09157 Sensory system", "children":[ { "name":"04744 Phototransduction" }, { "name":"04745 Phototransduction - fly" }, { "name":"04740 Olfactory transduction" }, { "name":"04742 Taste transduction" }, { "name":"04750 Inflammatory mediator regulation of TRP channels" } ] }, { "name":"09158 Development and regeneration", "children":[ { "name":"04320 Dorso-ventral axis formation" }, { "name":"04360 Axon guidance" }, { "name":"04361 Axon regeneration" }, { "name":"04380 Osteoclast differentiation" }, { "name":"04382 Cornified envelope formation", "children":[ { "name":"AAFP32_01125 hutH; (GenBank) histidine ammonia-lyase\tK01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]" } ] } ] }, { "name":"09149 Aging", "children":[ { "name":"04211 Longevity regulating pathway" }, { "name":"04212 Longevity regulating pathway - worm" }, { "name":"04213 Longevity regulating pathway - multiple species" } ] }, { "name":"09159 Environmental adaptation", "children":[ { "name":"04710 Circadian rhythm" }, { "name":"04713 Circadian entrainment" }, { "name":"04711 Circadian rhythm - fly" }, { "name":"04712 Circadian rhythm - plant" }, { "name":"04714 Thermogenesis" }, { "name":"04626 Plant-pathogen interaction" } ] } ] }, { "name":"09160 Human Diseases", "children":[ { "name":"09161 Cancer: overview", "children":[ { "name":"05200 Pathways in cancer" }, { "name":"05202 Transcriptional misregulation in cancer" }, { "name":"05206 MicroRNAs in cancer" }, { "name":"05205 Proteoglycans in cancer" }, { "name":"05204 Chemical carcinogenesis - DNA adducts" }, { "name":"05207 Chemical carcinogenesis - receptor activation" }, { "name":"05208 Chemical carcinogenesis - reactive oxygen species" }, { "name":"05203 Viral carcinogenesis" }, { "name":"05230 Central carbon metabolism in cancer" }, { "name":"05231 Choline metabolism in cancer" }, { "name":"05235 PD-L1 expression and PD-1 checkpoint pathway in cancer" } ] }, { "name":"09162 Cancer: specific types", "children":[ { "name":"05210 Colorectal cancer" }, { "name":"05212 Pancreatic cancer" }, { "name":"05225 Hepatocellular carcinoma" }, { "name":"05226 Gastric cancer" }, { "name":"05214 Glioma" }, { "name":"05216 Thyroid cancer" }, { "name":"05221 Acute myeloid leukemia" }, { "name":"05220 Chronic myeloid leukemia" }, { "name":"05217 Basal cell carcinoma" }, { "name":"05218 Melanoma" }, { "name":"05211 Renal cell carcinoma" }, { "name":"05219 Bladder cancer" }, { "name":"05215 Prostate cancer" }, { "name":"05213 Endometrial cancer" }, { "name":"05224 Breast cancer" }, { "name":"05222 Small cell lung cancer" }, { "name":"05223 Non-small cell lung cancer" } ] }, { "name":"09172 Infectious disease: viral", "children":[ { "name":"05166 Human T-cell leukemia virus 1 infection" }, { "name":"05170 Human immunodeficiency virus 1 infection" }, { "name":"05161 Hepatitis B" }, { "name":"05160 Hepatitis C" }, { "name":"05171 Coronavirus disease" }, { "name":"05164 Influenza A" }, { "name":"05162 Measles" }, { "name":"05168 Herpes simplex virus 1 infection" }, { "name":"05163 Human cytomegalovirus infection" }, { "name":"05167 Kaposi sarcoma-associated herpesvirus infection" }, { "name":"05169 Epstein-Barr virus infection" }, { "name":"05165 Human papillomavirus infection" } ] }, { "name":"09171 Infectious disease: bacterial", "children":[ { "name":"05110 Vibrio cholerae infection" }, { "name":"05120 Epithelial cell signaling in Helicobacter pylori infection" }, { "name":"05130 Pathogenic Escherichia coli infection" }, { "name":"05132 Salmonella infection" }, { "name":"05131 Shigellosis" }, { "name":"05135 Yersinia infection" }, { "name":"05133 Pertussis" }, { "name":"05134 Legionellosis" }, { "name":"05150 Staphylococcus aureus infection" }, { "name":"05152 Tuberculosis" }, { "name":"05100 Bacterial invasion of epithelial cells" } ] }, { "name":"09174 Infectious disease: parasitic", "children":[ { "name":"05146 Amoebiasis" }, { "name":"05144 Malaria" }, { "name":"05145 Toxoplasmosis" }, { "name":"05140 Leishmaniasis" }, { "name":"05142 Chagas disease" }, { "name":"05143 African trypanosomiasis" } ] }, { "name":"09163 Immune disease", "children":[ { "name":"05310 Asthma" }, { "name":"05322 Systemic lupus erythematosus" }, { "name":"05323 Rheumatoid arthritis" }, { "name":"05320 Autoimmune thyroid disease" }, { "name":"05321 Inflammatory bowel disease" }, { "name":"05330 Allograft rejection" }, { "name":"05332 Graft-versus-host disease" }, { "name":"05340 Primary immunodeficiency" } ] }, { "name":"09164 Neurodegenerative disease", "children":[ { "name":"05010 Alzheimer disease" }, { "name":"05012 Parkinson disease" }, { "name":"05014 Amyotrophic lateral sclerosis" }, { "name":"05016 Huntington disease" }, { "name":"05017 Spinocerebellar ataxia" }, { "name":"05020 Prion disease" }, { "name":"05022 Pathways of neurodegeneration - multiple diseases" } ] }, { "name":"09165 Substance dependence", "children":[ { "name":"05030 Cocaine addiction" }, { "name":"05031 Amphetamine addiction" }, { "name":"05032 Morphine addiction" }, { "name":"05033 Nicotine addiction" }, { "name":"05034 Alcoholism" } ] }, { "name":"09166 Cardiovascular disease", "children":[ { "name":"05417 Lipid and atherosclerosis" }, { "name":"05418 Fluid shear stress and atherosclerosis" }, { "name":"05410 Hypertrophic cardiomyopathy" }, { "name":"05412 Arrhythmogenic right ventricular cardiomyopathy" }, { "name":"05414 Dilated cardiomyopathy" }, { "name":"05415 Diabetic cardiomyopathy" }, { "name":"05416 Viral myocarditis" } ] }, { "name":"09167 Endocrine and metabolic disease", "children":[ { "name":"04930 Type II diabetes mellitus" }, { "name":"04940 Type I diabetes mellitus" }, { "name":"04950 Maturity onset diabetes of the young" }, { "name":"04936 Alcoholic liver disease" }, { "name":"04932 Non-alcoholic fatty liver disease" }, { "name":"04931 Insulin resistance" }, { "name":"04933 AGE-RAGE signaling pathway in diabetic complications" }, { "name":"04934 Cushing syndrome" } ] }, { "name":"09175 Drug resistance: antimicrobial", "children":[ { "name":"01501 beta-Lactam resistance [PATH:bkr01501]", "children":[ { "name":"AAFP32_12255 glycoside hydrolase family 3 N-terminal domain-containing protein\tK01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]" }, { "name":"AAFP32_09580 M56 family metallopeptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"AAFP32_09575 BlaI\/MecI\/CopY family transcriptional regulator\tK02171 blaI; BlaI family transcriptional regulator, penicillinase repressor" }, { "name":"AAFP32_14080 serine hydrolase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" }, { "name":"AAFP32_09705 penicillin-binding protein 2\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" } ] }, { "name":"01502 Vancomycin resistance [PATH:bkr01502]", "children":[ { "name":"AAFP32_10945 D-alanine--D-alanine ligase family protein\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"AAFP32_12315 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"AAFP32_09695 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase\tK01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]" }, { "name":"AAFP32_09690 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"AAFP32_09675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"AAFP32_03175 endonuclease\/exonuclease\/phosphatase family protein\tK18353 vanJ; vancomycin resistance protein VanJ" } ] }, { "name":"01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bkr01503]", "children":[ { "name":"AAFP32_09590 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"AAFP32_16365 peptidoglycan-binding protein\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"AAFP32_16540 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" } ] } ] }, { "name":"09176 Drug resistance: antineoplastic", "children":[ { "name":"01521 EGFR tyrosine kinase inhibitor resistance" }, { "name":"01524 Platinum drug resistance" }, { "name":"01523 Antifolate resistance" }, { "name":"01522 Endocrine resistance" } ] } ] }, { "name":"09180 Brite Hierarchies", "children":[ { "name":"09181 Protein families: metabolism", "children":[ { "name":"01000 Enzymes [BR:bkr01000]" }, { "name":"01001 Protein kinases [BR:bkr01001]", "children":[ { "name":"AAFP32_00005 pknB; (GenBank) Stk1 family PASTA domain-containing Ser\/Thr kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"AAFP32_00010 protein kinase\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"AAFP32_09770 PASTA domain-containing protein\tK12132 prkC; eukaryotic-like serine\/threonine-protein kinase [EC:2.7.11.1]" }, { "name":"AAFP32_14990 polysaccharide biosynthesis tyrosine autokinase\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"AAFP32_15005 polysaccharide biosynthesis tyrosine autokinase\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"AAFP32_13955 ATP-binding protein\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"AAFP32_06085 mtrB; (GenBank) MtrAB system histidine kinase MtrB\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"AAFP32_04760 HAMP domain-containing sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_13675 HAMP domain-containing sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_15905 histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"AAFP32_10485 ATP-binding protein\tK02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_06160 PAS domain-containing sensor histidine kinase\tK00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]" } ] }, { "name":"01009 Protein phosphatases and associated proteins [BR:bkr01009]", "children":[ { "name":"AAFP32_06040 ahcY; (GenBank) adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"AAFP32_00025 PP2C family serine\/threonine-protein phosphatase\tK20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]" }, { "name":"AAFP32_08555 serB; (GenBank) phosphoserine phosphatase SerB\tK01079 serB; phosphoserine phosphatase [EC:3.1.3.3]" } ] }, { "name":"01002 Peptidases and inhibitors [BR:bkr01002]", "children":[ { "name":"AAFP32_09635 signal peptidase II\tK03101 lspA; signal peptidase II [EC:3.4.23.36]" }, { "name":"AAFP32_12440 guaA; (GenBank) glutamine-hydrolyzing GMP synthase\tK01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]" }, { "name":"AAFP32_02710 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein\tK07010 K07010; putative glutamine amidotransferase" }, { "name":"AAFP32_14035 C40 family peptidase\tK20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]" }, { "name":"AAFP32_02605 purF; (GenBank) amidophosphoribosyltransferase\tK00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]" }, { "name":"AAFP32_08805 gltB; (GenBank) glutamate synthase large subunit\tK00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]" }, { "name":"AAFP32_12360 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing)\tK00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]" }, { "name":"AAFP32_14475 C45 family peptidase\tK19200 IAL; isopenicillin-N N-acyltransferase like protein" }, { "name":"AAFP32_03530 type 1 glutamine amidotransferase domain-containing protein\tK05520 yhbO; deglycase [EC:3.5.1.124]" }, { "name":"AAFP32_15800 CPBP family intramembrane glutamic endopeptidase\tK07052 K07052; CAAX protease family protein" }, { "name":"AAFP32_07320 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"AAFP32_14030 pepN; (GenBank) aminopeptidase N\tK01256 pepN; aminopeptidase N [EC:3.4.11.2]" }, { "name":"AAFP32_03345 M3 family metallopeptidase\tK01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]" }, { "name":"AAFP32_01545 M13-type metalloendopeptidase\tK07386 pepO; putative endopeptidase [EC:3.4.24.-]" }, { "name":"AAFP32_08030 leucyl aminopeptidase\tK01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]" }, { "name":"AAFP32_14075 dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" }, { "name":"AAFP32_03845 M20\/M25\/M40 family metallo-hydrolase\tK01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]" }, { "name":"AAFP32_15365 M20 family metallopeptidase\tK01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]" }, { "name":"AAFP32_06845 dapE; (GenBank) succinyl-diaminopimelate desuccinylase\tK01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]" }, { "name":"AAFP32_05725 amidohydrolase\tK12940 abgA; aminobenzoyl-glutamate utilization protein A" }, { "name":"AAFP32_04145 map; (GenBank) type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"AAFP32_04910 map; (GenBank) type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"AAFP32_07955 map; (GenBank) type I methionyl aminopeptidase\tK01265 map; methionyl aminopeptidase [EC:3.4.11.18]" }, { "name":"AAFP32_06920 aminopeptidase P family protein\tK01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]" }, { "name":"AAFP32_05410 iadA; (GenBank) beta-aspartyl-peptidase\tK01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]" }, { "name":"AAFP32_04060 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"AAFP32_13700 htpX; (GenBank) zinc metalloprotease HtpX\tK03799 htpX; heat shock protein HtpX [EC:3.4.24.-]" }, { "name":"AAFP32_09580 M56 family metallopeptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"AAFP32_03165 PrsW family intramembrane metalloprotease\tK24131 prsW; protease PrsW [EC:3.4.-.-]" }, { "name":"AAFP32_13680 trypsin-like peptidase domain-containing protein\tK08372 pepD; putative serine protease PepD [EC:3.4.21.-]" }, { "name":"AAFP32_11085 prolyl oligopeptidase family serine peptidase\tK01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]" }, { "name":"AAFP32_02415 S9 family peptidase\tK01354 ptrB; oligopeptidase B [EC:3.4.21.83]" }, { "name":"AAFP32_11655 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"AAFP32_04030 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"AAFP32_03470 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"AAFP32_03475 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"AAFP32_07375 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"AAFP32_07380 ATP-dependent Clp protease proteolytic subunit\tK01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]" }, { "name":"AAFP32_07000 S16 family serine protease\tK07177 K07177; Lon-like protease" }, { "name":"AAFP32_10395 lexA; (GenBank) transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"AAFP32_10790 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"AAFP32_10795 lepB; (GenBank) signal peptidase I\tK03100 lepB; signal peptidase I [EC:3.4.21.89]" }, { "name":"AAFP32_16515 PDZ domain-containing protein\tK08676 tri; tricorn protease [EC:3.4.21.-]" }, { "name":"AAFP32_09410 penicillin acylase family protein\tK01434 pac; penicillin G amidase [EC:3.5.1.11]" }, { "name":"AAFP32_14085 LD-carboxypeptidase\tK01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]" }, { "name":"AAFP32_08330 prcA; (GenBank) proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"AAFP32_08335 prcB; (GenBank) proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" }, { "name":"AAFP32_00520 gamma-glutamyltransferase\tK00681 ggt; gamma-glutamyltranspeptidase \/ glutathione hydrolase [EC:2.3.2.2 3.4.19.13]" } ] }, { "name":"01003 Glycosyltransferases [BR:bkr01003]", "children":[ { "name":"AAFP32_08265 polyprenol monophosphomannose synthase\tK00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]" }, { "name":"AAFP32_12745 phospholipid carrier-dependent glycosyltransferase\tK00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]" }, { "name":"AAFP32_12420 glycosyltransferase family 1 protein\tK12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]" }, { "name":"AAFP32_00020 FtsW\/RodA\/SpoVE family cell cycle protein\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09680 ftsW; (GenBank) putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_02255 glycosyltransferase family 2 protein\tK16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]" }, { "name":"AAFP32_13070 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" }, { "name":"AAFP32_13850 trehalose-6-phosphate synthase\tK00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]" } ] }, { "name":"01005 Lipopolysaccharide biosynthesis proteins [BR:bkr01005]", "children":[ { "name":"AAFP32_01750 glycosyltransferase family 4 protein\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" }, { "name":"AAFP32_07170 MraY family glycosyltransferase\tK02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate\/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]" } ] }, { "name":"01011 Peptidoglycan biosynthesis and degradation proteins [BR:bkr01011]", "children":[ { "name":"AAFP32_07225 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_10965 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase\tK00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]" }, { "name":"AAFP32_04645 UDP-N-acetylmuramate dehydrogenase\tK00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]" }, { "name":"AAFP32_09670 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase\tK01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]" }, { "name":"AAFP32_09685 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase\tK01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]" }, { "name":"AAFP32_09700 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase\tK01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]" }, { "name":"AAFP32_10945 D-alanine--D-alanine ligase family protein\tK01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]" }, { "name":"AAFP32_12315 alr; (GenBank) alanine racemase\tK01775 alr; alanine racemase [EC:5.1.1.1]" }, { "name":"AAFP32_01260 aspartate\/glutamate racemase family protein\tK01776 murI; glutamate racemase [EC:5.1.1.3]" }, { "name":"AAFP32_14085 LD-carboxypeptidase\tK01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]" }, { "name":"AAFP32_09690 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase\tK01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]" }, { "name":"AAFP32_09675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase\tK02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]" }, { "name":"AAFP32_08410 undecaprenyl-diphosphate phosphatase\tK06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]" }, { "name":"AAFP32_09940 lipid II flippase MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"AAFP32_16345 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"AAFP32_09705 penicillin-binding protein 2\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"AAFP32_00015 penicillin-binding transpeptidase domain-containing protein\tK05364 pbpA; penicillin-binding protein A" }, { "name":"AAFP32_11655 serine hydrolase\tK07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5\/6) [EC:3.4.16.4]" }, { "name":"AAFP32_04030 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase\tK07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase\/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]" }, { "name":"AAFP32_00020 FtsW\/RodA\/SpoVE family cell cycle protein\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09680 ftsW; (GenBank) putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09000 mltG; (GenBank) endolytic transglycosylase MltG\tK07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]" }, { "name":"AAFP32_08245 septal ring lytic transglycosylase RlpA family protein\tK03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]" }, { "name":"AAFP32_09590 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"AAFP32_16365 peptidoglycan-binding protein\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" } ] }, { "name":"01004 Lipid biosynthesis proteins [BR:bkr01004]", "children":[ { "name":"AAFP32_07835 ACP S-malonyltransferase\tK00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]" }, { "name":"AAFP32_07830 beta-ketoacyl-ACP synthase III\tK00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]" }, { "name":"AAFP32_00180 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_07820 beta-ketoacyl-[acyl-carrier-protein] synthase family protein\tK09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]" }, { "name":"AAFP32_01445 fabG; (GenBank) 3-oxoacyl-ACP reductase FabG\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08445 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_08570 beta-ketoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_09840 SDR family oxidoreductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_15265 3-oxoacyl-ACP reductase\tK00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]" }, { "name":"AAFP32_07295 acyl-CoA thioesterase II\tK10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.20]" }, { "name":"AAFP32_08565 fabI; (GenBank) enoyl-ACP reductase FabI\tK11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]" }, { "name":"AAFP32_03760 acs; (GenBank) acetate--CoA ligase\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_16325 AMP-binding protein\tK01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]" }, { "name":"AAFP32_15295 acetate--CoA ligase\tK01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]" }, { "name":"AAFP32_01710 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_05375 acetoacetate--CoA ligase\tK01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_07760 AMP-binding protein\tK00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]" }, { "name":"AAFP32_07920 fatty acyl-CoA synthetase\tK00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]" }, { "name":"AAFP32_08135 lysophospholipid acyltransferase family protein\tK00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]" } ] }, { "name":"01008 Polyketide biosynthesis proteins [BR:bkr01008]", "children":[ { "name":"AAFP32_13460 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK05556 actVI1; ketoreductase RED1 [EC:1.1.1.-]" }, { "name":"AAFP32_01850 amino acid racemase\tK01779 racD; aspartate racemase [EC:5.1.1.13]" } ] }, { "name":"01006 Prenyltransferases [BR:bkr01006]", "children":[ { "name":"AAFP32_09755 polyprenyl synthetase family protein\tK13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"AAFP32_13120 polyprenyl synthetase family protein\tK13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]" }, { "name":"AAFP32_06240 isoprenyl transferase\tK12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]" }, { "name":"AAFP32_09370 isoprenyl transferase\tK00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]" }, { "name":"AAFP32_10430 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"AAFP32_04375 1,4-dihydroxy-2-naphthoate polyprenyltransferase\tK02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]" }, { "name":"AAFP32_08665 heme o synthase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" } ] }, { "name":"01007 Amino acid related enzymes [BR:bkr01007]", "children":[ { "name":"AAFP32_07770 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_11010 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_10030 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"AAFP32_05005 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"AAFP32_13895 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"AAFP32_16525 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"AAFP32_12650 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"AAFP32_07415 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"AAFP32_07400 valS; (GenBank) valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"AAFP32_09270 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"AAFP32_04100 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"AAFP32_09030 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"AAFP32_09040 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"AAFP32_09360 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"AAFP32_14530 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"AAFP32_10665 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"AAFP32_09125 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"AAFP32_09010 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"AAFP32_10305 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"AAFP32_10300 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"AAFP32_16010 pyridoxal phosphate-dependent aminotransferase\tK14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]" }, { "name":"AAFP32_07040 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]" }, { "name":"AAFP32_01035 pyridoxal phosphate-dependent aminotransferase\tK10907 K10907; aminotransferase [EC:2.6.1.-]" }, { "name":"AAFP32_03315 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10385 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_11895 histidinol-phosphate transaminase\tK00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]" }, { "name":"AAFP32_10070 acetylornithine transaminase\tK00821 argD; acetylornithine\/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]" }, { "name":"AAFP32_14130 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase\tK07250 gabT; 4-aminobutyrate aminotransferase \/ (S)-3-amino-2-methylpropionate transaminase \/ 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]" }, { "name":"AAFP32_01495 ectB; (GenBank) diaminobutyrate--2-oxoglutarate transaminase\tK00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]" }, { "name":"AAFP32_04335 hemL; (GenBank) glutamate-1-semialdehyde 2,1-aminomutase\tK01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]" }, { "name":"AAFP32_11110 branched-chain amino acid aminotransferase\tK00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]" }, { "name":"AAFP32_13620 serC; (GenBank) phosphoserine transaminase\tK00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]" } ] }, { "name":"00199 Cytochrome P450" }, { "name":"00194 Photosynthesis proteins [BR:bkr00194]", "children":[ { "name":"AAFP32_07215 F0F1 ATP synthase subunit epsilon\tK02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon" }, { "name":"AAFP32_07210 atpD; (GenBank) F0F1 ATP synthase subunit beta\tK02112 ATPF1B; F-type H+\/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]" }, { "name":"AAFP32_07205 F0F1 ATP synthase subunit gamma\tK02115 ATPF1G; F-type H+-transporting ATPase subunit gamma" }, { "name":"AAFP32_07200 atpA; (GenBank) F0F1 ATP synthase subunit alpha\tK02111 ATPF1A; F-type H+\/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]" }, { "name":"AAFP32_07195 F0F1 ATP synthase subunit delta\tK02113 ATPF1D; F-type H+-transporting ATPase subunit delta" }, { "name":"AAFP32_07190 F0F1 ATP synthase subunit B\tK02109 ATPF0B; F-type H+-transporting ATPase subunit b" }, { "name":"AAFP32_07185 atpE; (GenBank) F0F1 ATP synthase subunit C\tK02110 ATPF0C; F-type H+-transporting ATPase subunit c" }, { "name":"AAFP32_07180 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" } ] } ] }, { "name":"09182 Protein families: genetic information processing", "children":[ { "name":"03000 Transcription factors [BR:bkr03000]", "children":[ { "name":"AAFP32_00885 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"AAFP32_07635 Ada metal-binding domain-containing protein\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"AAFP32_14695 LysR family transcriptional regulator\tK05596 argP; LysR family transcriptional regulator, arginine and lysine transport system\/DNA replication regulator" }, { "name":"AAFP32_12560 LacI family DNA-binding transcriptional regulator\tK02529 galR; LacI family transcriptional regulator, galactose operon repressor" }, { "name":"AAFP32_00680 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"AAFP32_03085 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"AAFP32_14270 GntR family transcriptional regulator\tK03710 K03710; GntR family transcriptional regulator" }, { "name":"AAFP32_06730 PLP-dependent aminotransferase family protein\tK00375 K00375; GntR family transcriptional regulator \/ MocR family aminotransferase" }, { "name":"AAFP32_10190 PLP-dependent aminotransferase family protein\tK00375 K00375; GntR family transcriptional regulator \/ MocR family aminotransferase" }, { "name":"AAFP32_09350 Lrp\/AsnC family transcriptional regulator\tK03718 asnC; Lrp\/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA" }, { "name":"AAFP32_02495 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"AAFP32_04265 LuxR C-terminal-related transcriptional regulator\tK21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism" }, { "name":"AAFP32_01980 MarR family transcriptional regulator\tK23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator" }, { "name":"AAFP32_02145 MarR family transcriptional regulator\tK23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator" }, { "name":"AAFP32_09430 MarR family transcriptional regulator\tK23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator" }, { "name":"AAFP32_16125 MerR family DNA-binding transcriptional regulator\tK19591 cueR; MerR family transcriptional regulator, copper efflux regulator" }, { "name":"AAFP32_14555 helix-turn-helix transcriptional regulator\tK13640 hspR; MerR family transcriptional regulator, heat shock protein HspR" }, { "name":"AAFP32_04775 Fur family transcriptional regulator\tK22297 furA; Fur family transcriptional regulator, stress-responsive regulator" }, { "name":"AAFP32_03290 IclR family transcriptional regulator\tK13641 iclR; IclR family transcriptional regulator, acetate operon repressor" }, { "name":"AAFP32_03735 Crp\/Fnr family transcriptional regulator\tK10914 crp; CRP\/FNR family transcriptional regulator, cyclic AMP receptor protein" }, { "name":"AAFP32_13325 metalloregulator ArsR\/SmtB family transcription factor\tK03892 arsR; ArsR family transcriptional regulator, arsenate\/arsenite\/antimonite-responsive transcriptional repressor" }, { "name":"AAFP32_06340 metalloregulator ArsR\/SmtB family transcription factor\tK21885 cmtR; ArsR family transcriptional regulator, cadmium\/lead-responsive transcriptional repressor" }, { "name":"AAFP32_15335 metalloregulator ArsR\/SmtB family transcription factor\tK22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor" }, { "name":"AAFP32_01355 helix-turn-helix domain-containing protein\tK21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator" }, { "name":"AAFP32_10460 helix-turn-helix transcriptional regulator\tK27043 clgR; XRE family transcriptional regulator, stress-response regulator" }, { "name":"AAFP32_13610 metal-dependent transcriptional regulator\tK26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor" }, { "name":"AAFP32_01230 metal-dependent transcriptional regulator\tK03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator" }, { "name":"AAFP32_09575 BlaI\/MecI\/CopY family transcriptional regulator\tK02171 blaI; BlaI family transcriptional regulator, penicillinase repressor" }, { "name":"AAFP32_05920 biotin--[acetyl-CoA-carboxylase] ligase\tK03524 birA; BirA family transcriptional regulator, biotin operon repressor \/ biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]" }, { "name":"AAFP32_04310 redox-sensing transcriptional repressor Rex\tK01926 rex; redox-sensing transcriptional repressor" }, { "name":"AAFP32_03675 helix-turn-helix transcriptional regulator\tK07727 K07727; putative transcriptional regulator" }, { "name":"AAFP32_01585 helix-turn-helix transcriptional regulator\tK07729 K07729; putative transcriptional regulator" }, { "name":"AAFP32_03090 bifunctional proline dehydrogenase\/L-glutamate gamma-semialdehyde dehydrogenase\tK13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor \/ proline dehydrogenase \/ delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]" }, { "name":"AAFP32_06010 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"AAFP32_06165 WhiB family transcriptional regulator\tK18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator" }, { "name":"AAFP32_15695 metal-sensitive transcriptional regulator\tK21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor" }, { "name":"AAFP32_14410 PucR family transcriptional regulator ligand-binding domain-containing protein\tK09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein" }, { "name":"AAFP32_15960 PucR family transcriptional regulator ligand-binding domain-containing protein\tK09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein" }, { "name":"AAFP32_16370 ParB\/RepB\/Spo0J family partition protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"AAFP32_13940 CarD family transcriptional regulator\tK07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription" }, { "name":"AAFP32_10060 arginine repressor\tK03402 argR; transcriptional regulator of arginine metabolism" }, { "name":"AAFP32_09195 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA\tK03705 hrcA; heat-inducible transcriptional repressor" }, { "name":"AAFP32_02675 TenA family protein\tK03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]" }, { "name":"AAFP32_12525 TenA family protein\tK03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]" }, { "name":"AAFP32_13785 PaaX family transcriptional regulator C-terminal domain-containing protein\tK02616 paaX; phenylacetic acid degradation operon negative regulatory protein" }, { "name":"AAFP32_08960 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator\/uracil phosphoribosyltransferase PyrR\tK02825 pyrR; pyrimidine operon attenuation protein \/ uracil phosphoribosyltransferase [EC:2.4.2.9]" }, { "name":"AAFP32_12210 TraR\/DksA C4-type zinc finger protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"AAFP32_09615 nrdR; (GenBank) transcriptional regulator NrdR\tK07738 nrdR; transcriptional repressor NrdR" }, { "name":"AAFP32_09720 mraZ; (GenBank) division\/cell wall cluster transcriptional repressor MraZ\tK03925 mraZ; transcriptional regulator MraZ" } ] }, { "name":"03021 Transcription machinery [BR:bkr03021]", "children":[ { "name":"AAFP32_13655 DNA repair helicase XPB\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" }, { "name":"AAFP32_04955 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"AAFP32_04725 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"AAFP32_04730 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"AAFP32_08915 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"AAFP32_09595 RNA polymerase sigma factor\tK03086 rpoD; RNA polymerase primary sigma factor" }, { "name":"AAFP32_05680 sigma-70 family RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"AAFP32_07065 sigma-70 family RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"AAFP32_08530 RNA polymerase subunit sigma-70\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"AAFP32_15095 RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"AAFP32_15850 sigma-70 family RNA polymerase sigma factor\tK03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily" }, { "name":"AAFP32_10640 nusA; (GenBank) transcription termination factor NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"AAFP32_08965 nusB; (GenBank) transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"AAFP32_04665 nusG; (GenBank) transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"AAFP32_12210 TraR\/DksA C4-type zinc finger protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"AAFP32_06215 greA; (GenBank) transcription elongation factor GreA\tK03624 greA; transcription elongation factor GreA" }, { "name":"AAFP32_07150 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" } ] }, { "name":"03019 Messenger RNA biogenesis [BR:bkr03019]", "children":[ { "name":"AAFP32_07440 Rne\/Rng family ribonuclease\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"AAFP32_10860 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"AAFP32_10515 ribonuclease J\tK12574 rnj; ribonuclease J [EC:3.1.-.-]" }, { "name":"AAFP32_11355 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"AAFP32_09365 DEAD\/DEAH box helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"AAFP32_14675 RecQ family ATP-dependent DNA helicase\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_15790 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"AAFP32_10590 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" }, { "name":"AAFP32_07150 rho; (GenBank) transcription termination factor Rho\tK03628 rho; transcription termination factor Rho" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_14160 RNA degradosome polyphosphate kinase\tK00937 ppk1; polyphosphate kinase [EC:2.7.4.1]" }, { "name":"AAFP32_05305 ppk2; (GenBank) polyphosphate kinase 2\tK22468 ppk2; polyphosphate kinase [EC:2.7.4.34]" }, { "name":"AAFP32_05550 rraA; (GenBank) ribonuclease E activity regulator RraA\tK02553 rraA; regulator of ribonuclease activity A" }, { "name":"AAFP32_08715 rapZ; (GenBank) RNase adapter RapZ\tK06958 rapZ; RNase adapter protein RapZ" }, { "name":"AAFP32_08285 DEAD\/DEAH box helicase\tK03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]" }, { "name":"AAFP32_05335 hrpA; (GenBank) ATP-dependent RNA helicase HrpA\tK03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]" }, { "name":"AAFP32_11045 hrpB; (GenBank) ATP-dependent helicase HrpB\tK03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]" } ] }, { "name":"03041 Spliceosome" }, { "name":"03011 Ribosome [BR:bkr03011]", "children":[ { "name":"AAFP32_08760 rpsA; (GenBank) 30S ribosomal protein S1\tK02945 RP-S1; small subunit ribosomal protein S1" }, { "name":"AAFP32_10750 rpsB; (GenBank) 30S ribosomal protein S2\tK02967 RP-S2; small subunit ribosomal protein S2" }, { "name":"AAFP32_04835 rpsC; (GenBank) 30S ribosomal protein S3\tK02982 RP-S3; small subunit ribosomal protein S3" }, { "name":"AAFP32_09015 rpsD; (GenBank) 30S ribosomal protein S4\tK02986 RP-S4; small subunit ribosomal protein S4" }, { "name":"AAFP32_04885 rpsE; (GenBank) 30S ribosomal protein S5\tK02988 RP-S5; small subunit ribosomal protein S5" }, { "name":"AAFP32_16310 rpsF; (GenBank) 30S ribosomal protein S6\tK02990 RP-S6; small subunit ribosomal protein S6" }, { "name":"AAFP32_04785 rpsG; (GenBank) 30S ribosomal protein S7\tK02992 RP-S7; small subunit ribosomal protein S7" }, { "name":"AAFP32_04870 rpsH; (GenBank) 30S ribosomal protein S8\tK02994 RP-S8; small subunit ribosomal protein S8" }, { "name":"AAFP32_12385 rpsI; (GenBank) 30S ribosomal protein S9\tK02996 RP-S9; small subunit ribosomal protein S9" }, { "name":"AAFP32_04800 rpsJ; (GenBank) 30S ribosomal protein S10\tK02946 RP-S10; small subunit ribosomal protein S10" }, { "name":"AAFP32_04950 rpsK; (GenBank) 30S ribosomal protein S11\tK02948 RP-S11; small subunit ribosomal protein S11" }, { "name":"AAFP32_04780 rpsL; (GenBank) 30S ribosomal protein S12\tK02950 RP-S12; small subunit ribosomal protein S12" }, { "name":"AAFP32_04945 rpsM; (GenBank) 30S ribosomal protein S13\tK02952 RP-S13; small subunit ribosomal protein S13" }, { "name":"AAFP32_15590 rpsN; (GenBank) 30S ribosomal protein S14\tK02954 RP-S14; small subunit ribosomal protein S14" }, { "name":"AAFP32_10595 rpsO; (GenBank) 30S ribosomal protein S15\tK02956 RP-S15; small subunit ribosomal protein S15" }, { "name":"AAFP32_10820 rpsP; (GenBank) 30S ribosomal protein S16\tK02959 RP-S16; small subunit ribosomal protein S16" }, { "name":"AAFP32_04850 rpsQ; (GenBank) 30S ribosomal protein S17\tK02961 RP-S17; small subunit ribosomal protein S17" }, { "name":"AAFP32_16300 rpsR; (GenBank) 30S ribosomal protein S18\tK02963 RP-S18; small subunit ribosomal protein S18" }, { "name":"AAFP32_04825 rpsS; (GenBank) 30S ribosomal protein S19\tK02965 RP-S19; small subunit ribosomal protein S19" }, { "name":"AAFP32_09230 rpsT; (GenBank) 30S ribosomal protein S20\tK02968 RP-S20; small subunit ribosomal protein S20" }, { "name":"AAFP32_04675 rplA; (GenBank) 50S ribosomal protein L1\tK02863 RP-L1; large subunit ribosomal protein L1" }, { "name":"AAFP32_04820 rplB; (GenBank) 50S ribosomal protein L2\tK02886 RP-L2; large subunit ribosomal protein L2" }, { "name":"AAFP32_04805 rplC; (GenBank) 50S ribosomal protein L3\tK02906 RP-L3; large subunit ribosomal protein L3" }, { "name":"AAFP32_04810 rplD; (GenBank) 50S ribosomal protein L4\tK02926 RP-L4; large subunit ribosomal protein L4" }, { "name":"AAFP32_04865 rplE; (GenBank) 50S ribosomal protein L5\tK02931 RP-L5; large subunit ribosomal protein L5" }, { "name":"AAFP32_04875 rplF; (GenBank) 50S ribosomal protein L6\tK02933 RP-L6; large subunit ribosomal protein L6" }, { "name":"AAFP32_16295 rplI; (GenBank) 50S ribosomal protein L9\tK02939 RP-L9; large subunit ribosomal protein L9" }, { "name":"AAFP32_04695 rplJ; (GenBank) 50S ribosomal protein L10\tK02864 RP-L10; large subunit ribosomal protein L10" }, { "name":"AAFP32_04670 rplK; (GenBank) 50S ribosomal protein L11\tK02867 RP-L11; large subunit ribosomal protein L11" }, { "name":"AAFP32_04700 rplL; (GenBank) 50S ribosomal protein L7\/L12\tK02935 RP-L7; large subunit ribosomal protein L7\/L12" }, { "name":"AAFP32_12390 rplM; (GenBank) 50S ribosomal protein L13\tK02871 RP-L13; large subunit ribosomal protein L13" }, { "name":"AAFP32_04855 rplN; (GenBank) 50S ribosomal protein L14\tK02874 RP-L14; large subunit ribosomal protein L14" }, { "name":"AAFP32_04895 rplO; (GenBank) 50S ribosomal protein L15\tK02876 RP-L15; large subunit ribosomal protein L15" }, { "name":"AAFP32_04840 rplP; (GenBank) 50S ribosomal protein L16\tK02878 RP-L16; large subunit ribosomal protein L16" }, { "name":"AAFP32_04960 rplQ; (GenBank) 50S ribosomal protein L17\tK02879 RP-L17; large subunit ribosomal protein L17" }, { "name":"AAFP32_04880 rplR; (GenBank) 50S ribosomal protein L18\tK02881 RP-L18; large subunit ribosomal protein L18" }, { "name":"AAFP32_10800 rplS; (GenBank) 50S ribosomal protein L19\tK02884 RP-L19; large subunit ribosomal protein L19" }, { "name":"AAFP32_10335 rplT; (GenBank) 50S ribosomal protein L20\tK02887 RP-L20; large subunit ribosomal protein L20" }, { "name":"AAFP32_07460 rplU; (GenBank) 50S ribosomal protein L21\tK02888 RP-L21; large subunit ribosomal protein L21" }, { "name":"AAFP32_04830 rplV; (GenBank) 50S ribosomal protein L22\tK02890 RP-L22; large subunit ribosomal protein L22" }, { "name":"AAFP32_04815 rplW; (GenBank) 50S ribosomal protein L23\tK02892 RP-L23; large subunit ribosomal protein L23" }, { "name":"AAFP32_04860 rplX; (GenBank) 50S ribosomal protein L24\tK02895 RP-L24; large subunit ribosomal protein L24" }, { "name":"AAFP32_07465 rpmA; (GenBank) 50S ribosomal protein L27\tK02899 RP-L27; large subunit ribosomal protein L27" }, { "name":"AAFP32_15600 rpmB; (GenBank) 50S ribosomal protein L28\tK02902 RP-L28; large subunit ribosomal protein L28" }, { "name":"AAFP32_04890 rpmD; (GenBank) 50S ribosomal protein L30\tK02907 RP-L30; large subunit ribosomal protein L30" }, { "name":"AAFP32_08510 type B 50S ribosomal protein L31\tK02909 RP-L31; large subunit ribosomal protein L31" }, { "name":"AAFP32_10865 rpmF; (GenBank) 50S ribosomal protein L32\tK02911 RP-L32; large subunit ribosomal protein L32" }, { "name":"AAFP32_15595 rpmG; (GenBank) 50S ribosomal protein L33\tK02913 RP-L33; large subunit ribosomal protein L33" }, { "name":"AAFP32_16410 rpmH; (GenBank) 50S ribosomal protein L34\tK02914 RP-L34; large subunit ribosomal protein L34" }, { "name":"AAFP32_10340 rpmI; (GenBank) 50S ribosomal protein L35\tK02916 RP-L35; large subunit ribosomal protein L35" }, { "name":"AAFP32_04940 rpmJ; (GenBank) 50S ribosomal protein L36\tK02919 RP-L36; large subunit ribosomal protein L36" }, { "name":"AAFP32_05205 50S ribosomal protein L25\/general stress protein Ctc\tK02897 RP-L25; large subunit ribosomal protein L25" }, { "name":"AAFP32_02480 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_05045 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_10020 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_15785 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_02485 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_05050 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_10015 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_15780 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" } ] }, { "name":"03009 Ribosome biogenesis [BR:bkr03009]", "children":[ { "name":"AAFP32_10860 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"AAFP32_11355 orn; (GenBank) oligoribonuclease\tK13288 orn; oligoribonuclease [EC:3.1.-.-]" }, { "name":"AAFP32_09165 era; (GenBank) GTPase Era\tK03595 era; GTPase" }, { "name":"AAFP32_07470 obgE; (GenBank) GTPase ObgE\tK03979 obgE; GTPase [EC:3.6.5.-]" }, { "name":"AAFP32_12210 TraR\/DksA C4-type zinc finger protein\tK06204 dksA; RNA polymerase-binding transcription factor" }, { "name":"AAFP32_10640 nusA; (GenBank) transcription termination factor NusA\tK02600 nusA; transcription termination\/antitermination protein NusA" }, { "name":"AAFP32_08965 nusB; (GenBank) transcription antitermination factor NusB\tK03625 nusB; transcription antitermination protein NusB" }, { "name":"AAFP32_04665 nusG; (GenBank) transcription termination\/antitermination protein NusG\tK02601 nusG; transcription termination\/antitermination protein NusG" }, { "name":"AAFP32_12235 rsmA; (GenBank) 16S rRNA (adenine(1518)-N(6)\/adenine(1519)-N(6))-dimethyltransferase RsmA\tK02528 ksgA; 16S rRNA (adenine1518-N6\/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]" }, { "name":"AAFP32_08890 transcription antitermination factor NusB\tK03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]" }, { "name":"AAFP32_10410 methyltransferase\tK00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]" }, { "name":"AAFP32_11565 methyltransferase\tK00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]" }, { "name":"AAFP32_10915 RsmD family RNA methyltransferase\tK08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]" }, { "name":"AAFP32_09185 16S rRNA (uracil(1498)-N(3))-methyltransferase\tK09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]" }, { "name":"AAFP32_16385 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"AAFP32_09715 rsmH; (GenBank) 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH\tK03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]" }, { "name":"AAFP32_12725 rsmI; (GenBank) 16S rRNA (cytidine(1402)-2'-O)-methyltransferase\tK07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]" }, { "name":"AAFP32_09970 TlyA family RNA methyltransferase\tK06442 tlyA; 23S rRNA (cytidine1920-2'-O)\/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]" }, { "name":"AAFP32_13890 rlmB; (GenBank) 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB\tK03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]" }, { "name":"AAFP32_10725 rlmN; (GenBank) 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN\tK06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]" }, { "name":"AAFP32_12590 pseudouridine synthase\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"AAFP32_09895 pseudouridine synthase\tK06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]" }, { "name":"AAFP32_09630 RluA family pseudouridine synthase\tK06180 rluD; 23S rRNA pseudouridine1911\/1915\/1917 synthase [EC:5.4.99.23]" }, { "name":"AAFP32_03935 GNAT family N-acetyltransferase\tK03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase \/ [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338]" }, { "name":"AAFP32_12300 GNAT family N-acetyltransferase\tK03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase \/ [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338]" }, { "name":"AAFP32_13545 GNAT family protein\tK03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]" }, { "name":"AAFP32_10810 rimM; (GenBank) ribosome maturation factor RimM\tK02860 rimM; 16S rRNA processing protein RimM" }, { "name":"AAFP32_07440 Rne\/Rng family ribonuclease\tK08300 rne; ribonuclease E [EC:3.1.26.12]" }, { "name":"AAFP32_09005 ruvX; (GenBank) Holliday junction resolvase RuvX\tK07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]" }, { "name":"AAFP32_09365 DEAD\/DEAH box helicase\tK05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]" }, { "name":"AAFP32_07050 rsgA; (GenBank) ribosome small subunit-dependent GTPase A\tK06949 rsgA; ribosome biogenesis GTPase \/ thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]" }, { "name":"AAFP32_09880 der; (GenBank) ribosome biogenesis GTPase Der\tK03977 engA; GTPase" }, { "name":"AAFP32_10405 hflX; (GenBank) GTPase HflX\tK03665 hflX; GTPase" }, { "name":"AAFP32_07165 L-threonylcarbamoyladenylate synthase\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"AAFP32_09060 bifunctional (p)ppGpp synthetase\/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase\tK01139 spoT; GTP diphosphokinase \/ guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]" }, { "name":"AAFP32_10625 rbfA; (GenBank) 30S ribosome-binding factor RbfA\tK02834 rbfA; ribosome-binding factor A" }, { "name":"AAFP32_10645 ribosome assembly cofactor RimP\tK09748 rimP; ribosome maturation factor RimP" }, { "name":"AAFP32_13710 RNA-binding S4 domain-containing protein\tK14761 rlbA; ribosome-associated protein" }, { "name":"AAFP32_07500 rsfS; (GenBank) ribosome silencing factor\tK09710 ybeB; ribosome-associated protein" }, { "name":"AAFP32_09175 ybeY; (GenBank) rRNA maturation RNase YbeY\tK07042 ybeY; probable rRNA maturation factor" }, { "name":"AAFP32_06290 ychF; (GenBank) redox-regulated ATPase YchF\tK06942 ychF; ribosome-binding ATPase" }, { "name":"AAFP32_10870 DUF177 domain-containing protein\tK07040 yceD; DUF177 domain-containing protein" } ] }, { "name":"03016 Transfer RNA biogenesis [BR:bkr03016]", "children":[ { "name":"AAFP32_16330 CCA tRNA nucleotidyltransferase\tK00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]" }, { "name":"AAFP32_07770 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_11010 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_10665 proline--tRNA ligase\tK01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]" }, { "name":"AAFP32_07415 ileS; (GenBank) isoleucine--tRNA ligase\tK01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]" }, { "name":"AAFP32_09270 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"AAFP32_12650 metG; (GenBank) methionine--tRNA ligase\tK01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]" }, { "name":"AAFP32_16525 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"AAFP32_04100 lysS; (GenBank) lysine--tRNA ligase\tK04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]" }, { "name":"AAFP32_09030 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"AAFP32_09010 alaS; (GenBank) alanine--tRNA ligase\tK01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]" }, { "name":"AAFP32_09360 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"AAFP32_09125 thrS; (GenBank) threonine--tRNA ligase\tK01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]" }, { "name":"AAFP32_14530 serS; (GenBank) serine--tRNA ligase\tK01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]" }, { "name":"AAFP32_13895 cysS; (GenBank) cysteine--tRNA ligase\tK01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]" }, { "name":"AAFP32_07400 valS; (GenBank) valine--tRNA ligase\tK01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]" }, { "name":"AAFP32_09040 hisS; (GenBank) histidine--tRNA ligase\tK01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]" }, { "name":"AAFP32_10305 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha\tK01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]" }, { "name":"AAFP32_10300 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta\tK01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]" }, { "name":"AAFP32_10030 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"AAFP32_05005 trpS; (GenBank) tryptophan--tRNA ligase\tK01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]" }, { "name":"AAFP32_11060 HIT family protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"AAFP32_10440 miaB; (GenBank) tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB\tK06168 CDK5RAP1; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]" }, { "name":"AAFP32_08360 tRNA (adenine-N1)-methyltransferase\tK07442 TRM61; tRNA (adenine57-N1\/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]" }, { "name":"AAFP32_12410 truA; (GenBank) tRNA pseudouridine(38-40) synthase TruA\tK06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]" }, { "name":"AAFP32_10615 truB; (GenBank) tRNA pseudouridine(55) synthase TruB\tK03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]" }, { "name":"AAFP32_11325 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_12495 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_07165 L-threonylcarbamoyladenylate synthase\tK07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]" }, { "name":"AAFP32_10430 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA\tK00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]" }, { "name":"AAFP32_16180 selD; (GenBank) selenide, water dikinase SelD\tK01008 selD; selenide, water dikinase [EC:2.7.9.3]" }, { "name":"AAFP32_16405 rnpA; (GenBank) ribonuclease P protein component\tK03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]" }, { "name":"AAFP32_05105 rph; (GenBank) ribonuclease PH\tK00989 rph; ribonuclease PH [EC:2.7.7.56]" }, { "name":"AAFP32_09460 HRDC domain-containing protein\tK03684 rnd; ribonuclease D [EC:3.1.13.5]" }, { "name":"AAFP32_07285 ettA; (GenBank) energy-dependent translational throttle protein EttA\tK06020 ettA; energy-dependent translational throttle protein EttA" }, { "name":"AAFP32_02875 ybaK; (GenBank) Cys-tRNA(Pro) deacylase\tK03976 ybaK; Cys-tRNA(Pro)\/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]" }, { "name":"AAFP32_03195 nucleoside deaminase\tK11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]" }, { "name":"AAFP32_10805 trmD; (GenBank) tRNA (guanosine(37)-N1)-methyltransferase TrmD\tK00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]" }, { "name":"AAFP32_08500 tRNA (cytidine(34)-2'-O)-methyltransferase\tK03216 trmL; tRNA (cytidine\/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]" }, { "name":"AAFP32_10330 RNA methyltransferase\tK03437 spoU; RNA methyltransferase, TrmH family" }, { "name":"AAFP32_12590 pseudouridine synthase\tK06177 rluA; tRNA pseudouridine32 synthase \/ 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]" }, { "name":"AAFP32_11320 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA\tK00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]" }, { "name":"AAFP32_14135 folate-binding protein\tK06980 ygfZ; tRNA-modifying protein YgfZ" }, { "name":"AAFP32_03335 tgt; (GenBank) tRNA guanosine(34) transglycosylase Tgt\tK00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]" }, { "name":"AAFP32_04040 tilS; (GenBank) tRNA lysidine(34) synthetase TilS\tK04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]" }, { "name":"AAFP32_12305 tsaB; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB\tK14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB" }, { "name":"AAFP32_12275 tsaD; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD\tK25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]" }, { "name":"AAFP32_12310 tsaE; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE\tK06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE" }, { "name":"AAFP32_10590 polyribonucleotide nucleotidyltransferase\tK00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]" } ] }, { "name":"03012 Translation factors [BR:bkr03012]", "children":[ { "name":"AAFP32_10630 infB; (GenBank) translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"AAFP32_10345 infC; (GenBank) translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"AAFP32_10745 tsf; (GenBank) translation elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"AAFP32_04795 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"AAFP32_04790 fusA; (GenBank) elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"AAFP32_16155 selB; (GenBank) selenocysteine-specific translation elongation factor\tK03833 selB; selenocysteine-specific elongation factor" }, { "name":"AAFP32_07155 prfA; (GenBank) peptide chain release factor 1\tK02835 prfA; peptide chain release factor 1" }, { "name":"AAFP32_10735 frr; (GenBank) ribosome recycling factor\tK02838 frr; ribosome recycling factor" }, { "name":"AAFP32_07160 prmC; (GenBank) peptide chain release factor N(5)-glutamine methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"AAFP32_10710 putative protein N(5)-glutamine methyltransferase\tK02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]" }, { "name":"AAFP32_05210 pth; (GenBank) aminoacyl-tRNA hydrolase\tK01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]" }, { "name":"AAFP32_04935 infA; (GenBank) translation initiation factor IF-1\tK02518 infA; translation initiation factor IF-1" }, { "name":"AAFP32_08970 efp; (GenBank) elongation factor P\tK02356 efp; elongation factor P" }, { "name":"AAFP32_12030 prfB; (GenBank) peptide chain release factor 2\tK02836 prfB; peptide chain release factor 2" }, { "name":"AAFP32_05345 peptide chain release factor 3\tK02837 prfC; peptide chain release factor 3" }, { "name":"AAFP32_06385 arfB; (GenBank) alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB\tK15034 yaeJ; ribosome-associated protein" } ] }, { "name":"03110 Chaperones and folding catalysts [BR:bkr03110]", "children":[ { "name":"AAFP32_15195 clpB; (GenBank) ATP-dependent chaperone ClpB\tK03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB" }, { "name":"AAFP32_03455 ATP-dependent Clp protease ATP-binding subunit\tK03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC" }, { "name":"AAFP32_04115 ATP-dependent Clp protease ATP-binding subunit\tK03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC" }, { "name":"AAFP32_07385 clpX; (GenBank) ATP-dependent Clp protease ATP-binding subunit ClpX\tK03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_09190 dnaJ; (GenBank) molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"AAFP32_14560 DnaJ C-terminal domain-containing protein\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"AAFP32_14565 nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"AAFP32_08175 Hsp20\/alpha crystallin family protein\tK13993 HSP20; HSP20 family protein" }, { "name":"AAFP32_10675 RNA-binding S4 domain-containing protein\tK04762 hslR; ribosome-associated heat shock protein Hsp15" }, { "name":"AAFP32_11475 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"AAFP32_12635 groES; (GenBank) co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"AAFP32_04060 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH\tK03798 ftsH; cell division protease FtsH [EC:3.4.24.-]" }, { "name":"AAFP32_07180 atpB; (GenBank) F0F1 ATP synthase subunit A\tK02108 ATPF0A; F-type H+-transporting ATPase subunit a" }, { "name":"AAFP32_15455 copper chaperone PCu(A)C\tK09796 pccA; periplasmic copper chaperone A" }, { "name":"AAFP32_16540 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"AAFP32_02940 peptidylprolyl isomerase\tK03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]" }, { "name":"AAFP32_16210 trxA; (GenBank) thioredoxin\tK03671 TXN; thioredoxin" }, { "name":"AAFP32_16360 trxA; (GenBank) thioredoxin\tK03671 TXN; thioredoxin" }, { "name":"AAFP32_11345 tetratricopeptide repeat protein\tK05838 ybbN; putative thioredoxin" } ] }, { "name":"04131 Membrane trafficking [BR:bkr04131]", "children":[ { "name":"AAFP32_07430 ndk; (GenBank) nucleoside-diphosphate kinase\tK00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]" }, { "name":"AAFP32_15385 SPFH domain-containing protein\tK07192 FLOT; flotillin" }, { "name":"AAFP32_06365 ArsA family ATPase\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"AAFP32_08700 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_09290 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_14300 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_13975 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" }, { "name":"AAFP32_08795 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"AAFP32_14925 MFS transporter\tK06902 UMF1; MFS transporter, UMF1 family" } ] }, { "name":"04121 Ubiquitin system [BR:bkr04121]", "children":[ { "name":"AAFP32_08340 ubiquitin-like protein Pup\tK13570 pup; prokaryotic ubiquitin-like protein Pup" } ] }, { "name":"03051 Proteasome [BR:bkr03051]", "children":[ { "name":"AAFP32_08330 prcA; (GenBank) proteasome subunit alpha\tK03432 psmA; proteasome alpha subunit [EC:3.4.25.1]" }, { "name":"AAFP32_08335 prcB; (GenBank) proteasome subunit beta\tK03433 psmB; proteasome beta subunit [EC:3.4.25.1]" }, { "name":"AAFP32_08355 arc; (GenBank) proteasome ATPase\tK13527 mpa; proteasome-associated ATPase" }, { "name":"AAFP32_08325 pafA; (GenBank) Pup--protein ligase\tK13571 pafA; proteasome accessory factor A [EC:6.3.1.19]" }, { "name":"AAFP32_08305 WYL domain-containing protein\tK13572 pafB; proteasome accessory factor B" }, { "name":"AAFP32_08300 WYL domain-containing protein\tK13573 pafC; proteasome accessory factor C" }, { "name":"AAFP32_08345 dop; (GenBank) depupylase\/deamidase Dop\tK20814 dop; Pup amidohydrolase [EC:3.5.1.119]" } ] }, { "name":"03032 DNA replication proteins [BR:bkr03032]", "children":[ { "name":"AAFP32_00885 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"AAFP32_15585 HU family DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"AAFP32_16415 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"AAFP32_16245 dnaB; (GenBank) replicative DNA helicase\tK02314 dnaB; replicative DNA helicase [EC:5.6.2.3]" }, { "name":"AAFP32_09315 dnaG; (GenBank) DNA primase\tK02316 dnaG; DNA primase [EC:2.7.7.101]" }, { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_09625 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"AAFP32_16420 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"AAFP32_09235 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"AAFP32_03840 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"AAFP32_08120 DEDD exonuclease domain-containing protein\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"AAFP32_03660 DNA polymerase III subunit gamma and tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"AAFP32_10785 ribonuclease HII\tK03470 rnhB; ribonuclease HII [EC:3.1.26.4]" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"AAFP32_05930 DNA topoisomerase IV subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"AAFP32_16440 gyrA; (GenBank) DNA gyrase subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"AAFP32_09585 DNA topoisomerase IV subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"AAFP32_16435 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"AAFP32_03820 topA; (GenBank) type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" } ] }, { "name":"03036 Chromosome and associated proteins [BR:bkr03036]", "children":[ { "name":"AAFP32_00885 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"AAFP32_10860 rnc; (GenBank) ribonuclease III\tK03685 rnc; ribonuclease III [EC:3.1.26.3]" }, { "name":"AAFP32_15385 SPFH domain-containing protein\tK07192 FLOT; flotillin" }, { "name":"AAFP32_04110 Lsr2 family protein\tK26249 lsr2; nucleoid-associated protein Lsr2" }, { "name":"AAFP32_15585 HU family DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"AAFP32_16415 dnaA; (GenBank) chromosomal replication initiator protein DnaA\tK02313 dnaA; chromosomal replication initiator protein" }, { "name":"AAFP32_01925 DNA starvation\/stationary phase protection protein\tK04047 dps; starvation-inducible DNA-binding protein" }, { "name":"AAFP32_02110 DNA starvation\/stationary phase protection protein\tK04047 dps; starvation-inducible DNA-binding protein" }, { "name":"AAFP32_14695 LysR family transcriptional regulator\tK05596 argP; LysR family transcriptional regulator, arginine and lysine transport system\/DNA replication regulator" }, { "name":"AAFP32_02495 Lrp\/AsnC family transcriptional regulator\tK03719 lrp; Lrp\/AsnC family transcriptional regulator, leucine-responsive regulatory protein" }, { "name":"AAFP32_10845 smc; (GenBank) chromosome segregation protein SMC\tK03529 smc; chromosome segregation protein" }, { "name":"AAFP32_09905 ScpA family protein\tK05896 scpA; segregation and condensation protein A" }, { "name":"AAFP32_09900 scpB; (GenBank) SMC-Scp complex subunit ScpB\tK06024 scpB; segregation and condensation protein B" }, { "name":"AAFP32_12025 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"AAFP32_09705 penicillin-binding protein 2\tK03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]" }, { "name":"AAFP32_10475 DNA translocase FtsK\tK03466 ftsK; DNA segregation ATPase FtsK\/SpoIIIE, S-DNA-T family" }, { "name":"AAFP32_09665 FtsQ-type POTRA domain-containing protein\tK03589 ftsQ; cell division protein FtsQ" }, { "name":"AAFP32_00020 FtsW\/RodA\/SpoVE family cell cycle protein\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09680 ftsW; (GenBank) putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_12020 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"AAFP32_09660 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"AAFP32_09160 zapE; (GenBank) cell division protein ZapE\tK06916 zapE; cell division protein ZapE" }, { "name":"AAFP32_09590 N-acetylmuramoyl-L-alanine amidase\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"AAFP32_16365 peptidoglycan-binding protein\tK01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]" }, { "name":"AAFP32_09650 sepF; (GenBank) cell division protein SepF\tK09772 sepF; cell division inhibitor SepF" }, { "name":"AAFP32_08145 ParA family protein\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_09910 AAA family ATPase\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_16380 ParA family protein\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_16370 ParB\/RepB\/Spo0J family partition protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" }, { "name":"AAFP32_16385 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG\tK03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]" }, { "name":"AAFP32_10760 tyrosine recombinase XerC\tK03733 xerC; integrase\/recombinase XerC" }, { "name":"AAFP32_09915 xerD; (GenBank) site-specific tyrosine recombinase XerD\tK04763 xerD; integrase\/recombinase XerD" }, { "name":"AAFP32_06895 Mrp\/NBP35 family ATP-binding protein\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"AAFP32_08705 whiA; (GenBank) DNA-binding protein WhiA\tK09762 whiA; cell division protein WhiA" } ] }, { "name":"03400 DNA repair and recombination proteins [BR:bkr03400]", "children":[ { "name":"AAFP32_07640 methylated-DNA--[protein]-cysteine S-methyltransferase\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]" }, { "name":"AAFP32_15445 methylated-DNA--[protein]-cysteine S-methyltransferase\tK00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]" }, { "name":"AAFP32_13150 deoxyribodipyrimidine photo-lyase\tK01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]" }, { "name":"AAFP32_13760 uracil-DNA glycosylase\tK03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]" }, { "name":"AAFP32_04125 A\/G-specific adenine glycosylase\tK03575 mutY; A\/G-specific adenine glycosylase [EC:3.2.2.31]" }, { "name":"AAFP32_03740 nth; (GenBank) endonuclease III\tK10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]" }, { "name":"AAFP32_13655 DNA repair helicase XPB\tK10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]" }, { "name":"AAFP32_12270 NUDIX domain-containing protein\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"AAFP32_13425 NUDIX domain-containing protein\tK03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]" }, { "name":"AAFP32_09530 dut; (GenBank) dUTP diphosphatase\tK01520 dut; dUTP diphosphatase [EC:3.6.1.23]" }, { "name":"AAFP32_07560 alpha-ketoglutarate-dependent dioxygenase AlkB\tK03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]" }, { "name":"AAFP32_06480 mismatch-specific DNA-glycosylase\tK03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]" }, { "name":"AAFP32_07635 Ada metal-binding domain-containing protein\tK13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response \/ DNA-3-methyladenine glycosylase II [EC:3.2.2.21]" }, { "name":"AAFP32_13430 DNA-3-methyladenine glycosylase I\tK01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]" }, { "name":"AAFP32_02735 DNA-formamidopyrimidine glycosylase family protein\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"AAFP32_10855 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase\/DNA-(apurinic or apyrimidinic site) lyase\tK10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]" }, { "name":"AAFP32_04990 exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"AAFP32_15135 exodeoxyribonuclease III\tK01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]" }, { "name":"AAFP32_11305 ligA; (GenBank) NAD-dependent DNA ligase LigA\tK01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]" }, { "name":"AAFP32_08770 polA; (GenBank) DNA polymerase I\tK02335 polA; DNA polymerase I [EC:2.7.7.7]" }, { "name":"AAFP32_08725 uvrA; (GenBank) excinuclease ABC subunit UvrA\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"AAFP32_11560 ABC transporter\tK03701 uvrA; excinuclease ABC subunit A" }, { "name":"AAFP32_08745 uvrB; (GenBank) excinuclease ABC subunit UvrB\tK03702 uvrB; excinuclease ABC subunit B" }, { "name":"AAFP32_08720 uvrC; (GenBank) excinuclease ABC subunit UvrC\tK03703 uvrC; excinuclease ABC subunit C" }, { "name":"AAFP32_05175 UvrD-helicase domain-containing protein\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06960 ATP-dependent DNA helicase\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_06975 ATP-dependent DNA helicase UvrD2\tK03657 uvrD; ATP-dependent DNA helicase UvrD\/PcrA [EC:5.6.2.4]" }, { "name":"AAFP32_04725 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta\tK03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]" }, { "name":"AAFP32_04730 DNA-directed RNA polymerase subunit beta'\tK03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]" }, { "name":"AAFP32_04955 DNA-directed RNA polymerase subunit alpha\tK03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]" }, { "name":"AAFP32_08915 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega\tK03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]" }, { "name":"AAFP32_05225 mfd; (GenBank) transcription-repair coupling factor\tK03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"AAFP32_06275 xseA; (GenBank) exodeoxyribonuclease VII large subunit\tK03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]" }, { "name":"AAFP32_06270 exodeoxyribonuclease VII small subunit\tK03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]" }, { "name":"AAFP32_09625 dnaE; (GenBank) DNA polymerase III subunit alpha\tK02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]" }, { "name":"AAFP32_16420 dnaN; (GenBank) DNA polymerase III subunit beta\tK02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]" }, { "name":"AAFP32_09235 holA; (GenBank) DNA polymerase III subunit delta\tK02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]" }, { "name":"AAFP32_03840 DNA polymerase III subunit delta'\tK02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]" }, { "name":"AAFP32_08120 DEDD exonuclease domain-containing protein\tK02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]" }, { "name":"AAFP32_03660 DNA polymerase III subunit gamma and tau\tK02343 dnaX; DNA polymerase III subunit gamma\/tau [EC:2.7.7.7]" }, { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_00920 very short patch repair endonuclease\tK07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]" }, { "name":"AAFP32_10450 recA; (GenBank) recombinase RecA\tK03553 recA; recombination protein RecA" }, { "name":"AAFP32_09085 ruvA; (GenBank) Holliday junction branch migration protein RuvA\tK03550 ruvA; holliday junction DNA helicase RuvA" }, { "name":"AAFP32_09080 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB\tK03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]" }, { "name":"AAFP32_09100 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC\tK01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]" }, { "name":"AAFP32_08900 primosomal protein N'\tK04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]" }, { "name":"AAFP32_04140 radA; (GenBank) DNA repair protein RadA\tK04485 radA; DNA repair protein RadA\/Sms" }, { "name":"AAFP32_16425 recF; (GenBank) DNA replication\/repair protein RecF\tK03629 recF; DNA replication and repair protein RecF" }, { "name":"AAFP32_10920 ATP-dependent DNA helicase RecG\tK03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]" }, { "name":"AAFP32_09375 recO; (GenBank) DNA repair protein RecO\tK03584 recO; DNA repair protein RecO (recombination protein O)" }, { "name":"AAFP32_03665 recR; (GenBank) recombination mediator RecR\tK06187 recR; recombination protein RecR" }, { "name":"AAFP32_09960 recN; (GenBank) DNA repair protein RecN\tK03631 recN; DNA repair protein RecN (Recombination protein N)" }, { "name":"AAFP32_13100 Ku protein\tK10979 ku; DNA end-binding protein Ku" }, { "name":"AAFP32_13095 ATP-dependent DNA ligase\tK01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]" }, { "name":"AAFP32_05930 DNA topoisomerase IV subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"AAFP32_16440 gyrA; (GenBank) DNA gyrase subunit A\tK02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]" }, { "name":"AAFP32_09585 DNA topoisomerase IV subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"AAFP32_16435 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B\tK02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]" }, { "name":"AAFP32_03820 topA; (GenBank) type I DNA topoisomerase\tK03168 topA; DNA topoisomerase I [EC:5.6.2.1]" }, { "name":"AAFP32_15585 HU family DNA-binding protein\tK03530 hupB; DNA-binding protein HU-beta" }, { "name":"AAFP32_14675 RecQ family ATP-dependent DNA helicase\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_15790 recQ; (GenBank) DNA helicase RecQ\tK03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]" }, { "name":"AAFP32_09745 dinB; (GenBank) DNA polymerase IV\tK02346 dinB; DNA polymerase IV [EC:2.7.7.7]" }, { "name":"AAFP32_10395 lexA; (GenBank) transcriptional repressor LexA\tK01356 lexA; repressor LexA [EC:3.4.21.88]" }, { "name":"AAFP32_08480 DNA polymerase Y family protein\tK14161 imuB; protein ImuB" }, { "name":"AAFP32_08475 error-prone DNA polymerase\tK14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]" }, { "name":"AAFP32_11740 dnaE; (GenBank) DNA polymerase III subunit alpha\tK14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]" }, { "name":"AAFP32_10445 regulatory protein RecX\tK03565 recX; regulatory protein" }, { "name":"AAFP32_10400 ATP-dependent DNA helicase\tK03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]" }, { "name":"AAFP32_14165 NUDIX domain-containing protein\tK23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]" }, { "name":"AAFP32_09920 NUDIX hydrolase\tK01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]" }, { "name":"AAFP32_11850 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha\tK00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]" }, { "name":"AAFP32_11845 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta\tK00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]" } ] }, { "name":"03029 Mitochondrial biogenesis [BR:bkr03029]", "children":[ { "name":"AAFP32_10630 infB; (GenBank) translation initiation factor IF-2\tK02519 infB; translation initiation factor IF-2" }, { "name":"AAFP32_10345 infC; (GenBank) translation initiation factor IF-3\tK02520 infC; translation initiation factor IF-3" }, { "name":"AAFP32_10745 tsf; (GenBank) translation elongation factor Ts\tK02357 tsf; elongation factor Ts" }, { "name":"AAFP32_04795 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"AAFP32_04790 fusA; (GenBank) elongation factor G\tK02355 fusA; elongation factor G" }, { "name":"AAFP32_09165 era; (GenBank) GTPase Era\tK03595 era; GTPase" }, { "name":"AAFP32_10030 tyrS; (GenBank) tyrosine--tRNA ligase\tK01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]" }, { "name":"AAFP32_09270 leuS; (GenBank) leucine--tRNA ligase\tK01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]" }, { "name":"AAFP32_09030 aspS; (GenBank) aspartate--tRNA ligase\tK01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]" }, { "name":"AAFP32_09360 glycine--tRNA ligase\tK01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]" }, { "name":"AAFP32_16525 argS; (GenBank) arginine--tRNA ligase\tK01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]" }, { "name":"AAFP32_01090 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_01855 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_05135 amidase\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11290 gatA; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatA\tK02433 gatA; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11285 gatB; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatB\tK02434 gatB; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_11295 gatC; (GenBank) Asp-tRNA(Asn)\/Glu-tRNA(Gln) amidotransferase subunit GatC\tK02435 gatC; aspartyl-tRNA(Asn)\/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]" }, { "name":"AAFP32_07275 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_11810 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_16305 single-stranded DNA-binding protein\tK03111 ssb; single-strand DNA-binding protein" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_14565 nucleotide exchange factor GrpE\tK03687 GRPE; molecular chaperone GrpE" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_11475 co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"AAFP32_12635 groES; (GenBank) co-chaperone GroES\tK04078 groES; chaperonin GroES" }, { "name":"AAFP32_09190 dnaJ; (GenBank) molecular chaperone DnaJ\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"AAFP32_14560 DnaJ C-terminal domain-containing protein\tK03686 dnaJ; molecular chaperone DnaJ" }, { "name":"AAFP32_11325 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_12495 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_06895 Mrp\/NBP35 family ATP-binding protein\tK03593 mrp; ATP-binding protein involved in chromosome partitioning" }, { "name":"AAFP32_08665 heme o synthase\tK02257 COX10; heme o synthase [EC:2.5.1.141]" }, { "name":"AAFP32_08650 COX15\/CtaA family protein\tK02259 COX15; heme a synthase [EC:1.17.99.9]" }, { "name":"AAFP32_03460 YidC\/Oxa1 family membrane protein insertase\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_16395 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" } ] } ] }, { "name":"09183 Protein families: signaling and cellular processes", "children":[ { "name":"02000 Transporters [BR:bkr02000]", "children":[ { "name":"AAFP32_02515 ABC transporter ATP-binding protein\tK18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"AAFP32_02520 ABC transporter ATP-binding protein\tK18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump" }, { "name":"AAFP32_11175 ABC transporter ATP-binding protein\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"AAFP32_11180 ABC transporter ATP-binding protein\tK06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial" }, { "name":"AAFP32_09560 cydC; (GenBank) thiol reductant ABC exporter subunit CydC\tK16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD" }, { "name":"AAFP32_12205 ABC-F family ATP-binding cassette domain-containing protein\tK15738 uup; ABC transport system ATP-binding\/permease protein" }, { "name":"AAFP32_07750 modA; (GenBank) molybdate ABC transporter substrate-binding protein\tK02020 modA; molybdate transport system substrate-binding protein" }, { "name":"AAFP32_07755 ABC transporter permease\tK02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]" }, { "name":"AAFP32_02555 spermidine\/putrescine ABC transporter substrate-binding protein\tK11069 potD; spermidine\/putrescine transport system substrate-binding protein" }, { "name":"AAFP32_02545 ABC transporter permease\tK11070 potC; spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_02550 ABC transporter permease\tK11071 potB; spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_02560 ABC transporter ATP-binding protein\tK11072 potA; spermidine\/putrescine transport system ATP-binding protein [EC:7.6.2.11]" }, { "name":"AAFP32_03080 extracellular solute-binding protein\tK02055 ABC.SP.S; putative spermidine\/putrescine transport system substrate-binding protein" }, { "name":"AAFP32_03070 ABC transporter permease subunit\tK02053 ABC.SP.P; putative spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_03075 spermidine\/putrescine ABC transporter permease\tK02054 ABC.SP.P1; putative spermidine\/putrescine transport system permease protein" }, { "name":"AAFP32_03065 ABC transporter ATP-binding protein\tK02052 ABC.SP.A; putative spermidine\/putrescine transport system ATP-binding protein" }, { "name":"AAFP32_15440 glycine betaine ABC transporter substrate-binding protein\tK02002 proX; glycine betaine\/proline transport system substrate-binding protein" }, { "name":"AAFP32_15435 ABC transporter permease subunit\tK02001 proW; glycine betaine\/proline transport system permease protein" }, { "name":"AAFP32_15430 glycine betaine\/L-proline ABC transporter ATP-binding protein\tK02000 proV; glycine betaine\/proline transport system ATP-binding protein [EC:7.6.2.9]" }, { "name":"AAFP32_13870 ABC transporter ATP-binding protein\tK10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]" }, { "name":"AAFP32_12555 substrate-binding domain-containing protein\tK10543 xylF; D-xylose transport system substrate-binding protein" }, { "name":"AAFP32_12545 ABC transporter permease\tK10544 xylH; D-xylose transport system permease protein" }, { "name":"AAFP32_12550 ATP-binding cassette domain-containing protein\tK10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]" }, { "name":"AAFP32_11620 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"AAFP32_12200 BMP family ABC transporter substrate-binding protein\tK07335 bmpA; basic membrane protein A and related proteins" }, { "name":"AAFP32_12190 ABC transporter permease\tK23535 nupB; general nucleoside transport system permease protein" }, { "name":"AAFP32_12185 ABC transporter permease\tK23536 nupC; general nucleoside transport system permease protein" }, { "name":"AAFP32_12195 ABC transporter ATP-binding protein\tK23537 nupA; general nucleoside transport system ATP-binding protein" }, { "name":"AAFP32_14170 pstS; (GenBank) phosphate ABC transporter substrate-binding protein PstS\tK02040 pstS; phosphate transport system substrate-binding protein" }, { "name":"AAFP32_14175 pstC; (GenBank) phosphate ABC transporter permease subunit PstC\tK02037 pstC; phosphate transport system permease protein" }, { "name":"AAFP32_14180 pstA; (GenBank) phosphate ABC transporter permease PstA\tK02038 pstA; phosphate transport system permease protein" }, { "name":"AAFP32_14185 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB\tK02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]" }, { "name":"AAFP32_00670 PhnD\/SsuA\/transferrin family substrate-binding protein\tK02044 phnD; phosphonate transport system substrate-binding protein" }, { "name":"AAFP32_00655 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE\tK02042 phnE; phosphonate transport system permease protein" }, { "name":"AAFP32_00660 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein\tK02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]" }, { "name":"AAFP32_09845 ABC transporter substrate-binding protein\tK01999 livK; branched-chain amino acid transport system substrate-binding protein" }, { "name":"AAFP32_09850 branched-chain amino acid ABC transporter permease\tK01997 livH; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09855 branched-chain amino acid ABC transporter permease\tK01998 livM; branched-chain amino acid transport system permease protein" }, { "name":"AAFP32_09860 ABC transporter ATP-binding protein\tK01995 livG; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_09865 ABC transporter ATP-binding protein\tK01996 livF; branched-chain amino acid transport system ATP-binding protein" }, { "name":"AAFP32_12805 MetQ\/NlpA family ABC transporter substrate-binding protein\tK02073 metQ; D-methionine transport system substrate-binding protein" }, { "name":"AAFP32_12800 methionine ABC transporter permease\tK02072 metI; D-methionine transport system permease protein" }, { "name":"AAFP32_12795 methionine ABC transporter ATP-binding protein\tK02071 metN; D-methionine transport system ATP-binding protein" }, { "name":"AAFP32_02420 ABC transporter substrate-binding protein\tK01989 K01989; putative tryptophan\/tyrosine transport system substrate-binding protein" }, { "name":"AAFP32_02425 ABC transporter permease\tK05832 K05832; putative tryptophan\/tyrosine transport system permease protein" }, { "name":"AAFP32_02430 ABC transporter ATP-binding protein\tK05833 K05833; putative tryptophan\/tyrosine transport system ATP-binding protein" }, { "name":"AAFP32_02915 basic amino acid ABC transporter substrate-binding protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"AAFP32_10890 transporter substrate-binding domain-containing protein\tK02030 ABC.PA.S; polar amino acid transport system substrate-binding protein" }, { "name":"AAFP32_02910 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"AAFP32_10895 amino acid ABC transporter permease\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"AAFP32_10900 ehuD; (GenBank) ectoine\/hydroxyectoine ABC transporter permease subunit EhuD\tK02029 ABC.PA.P; polar amino acid transport system permease protein" }, { "name":"AAFP32_02905 amino acid ABC transporter ATP-binding protein\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"AAFP32_10905 ehuA; (GenBank) ectoine\/hydroxyectoine ABC transporter ATP-binding protein EhuA\tK02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]" }, { "name":"AAFP32_06785 ABC transporter family substrate-binding protein\tK13889 gsiB; glutathione transport system substrate-binding protein" }, { "name":"AAFP32_11220 ABC transporter family substrate-binding protein\tK13889 gsiB; glutathione transport system substrate-binding protein" }, { "name":"AAFP32_06790 ABC transporter permease\tK13890 gsiC; glutathione transport system permease protein" }, { "name":"AAFP32_11235 ABC transporter permease\tK13890 gsiC; glutathione transport system permease protein" }, { "name":"AAFP32_06795 ABC transporter permease\tK13891 gsiD; glutathione transport system permease protein" }, { "name":"AAFP32_11230 ABC transporter permease\tK13891 gsiD; glutathione transport system permease protein" }, { "name":"AAFP32_11225 ABC transporter ATP-binding protein\tK13892 gsiA; glutathione transport system ATP-binding protein" }, { "name":"AAFP32_03435 TIGR04028 family ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_05115 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_05435 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_11150 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_12905 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_14105 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_14905 ABC transporter substrate-binding protein\tK02035 ABC.PE.S; peptide\/nickel transport system substrate-binding protein" }, { "name":"AAFP32_03430 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05120 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05430 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_11145 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_12900 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14100 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14900 ABC transporter permease\tK02033 ABC.PE.P; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_03425 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05125 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_05425 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_11140 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_12895 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14095 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_14895 ABC transporter permease\tK02034 ABC.PE.P1; peptide\/nickel transport system permease protein" }, { "name":"AAFP32_03420 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05130 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05420 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_06800 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_11155 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_12890 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_14890 ABC transporter ATP-binding protein\tK02031 ddpD; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_05415 ATP-binding cassette domain-containing protein\tK02032 ddpF; peptide\/nickel transport system ATP-binding protein" }, { "name":"AAFP32_16090 ABC transporter substrate-binding protein\tK25287 desE; iron-desferrioxamine transport system substrate-binding protein" }, { "name":"AAFP32_03500 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_03575 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_06545 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_07010 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_14640 iron-siderophore ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_15330 ABC transporter substrate-binding protein\tK25286 fagD; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_03570 iron ABC transporter permease\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"AAFP32_06570 iron chelate uptake ABC transporter family permease subunit\tK23186 fepD; iron-siderophore transport system permease protein" }, { "name":"AAFP32_03565 iron chelate uptake ABC transporter family permease subunit\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"AAFP32_06575 iron chelate uptake ABC transporter family permease subunit\tK23187 fepG; iron-siderophore transport system permease protein" }, { "name":"AAFP32_03560 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"AAFP32_06580 ABC transporter ATP-binding protein\tK23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]" }, { "name":"AAFP32_01405 ABC transporter substrate-binding protein\tK25282 yclQ; iron-siderophore transport system substrate-binding protein" }, { "name":"AAFP32_01415 iron chelate uptake ABC transporter family permease subunit\tK25283 yclO; iron-siderophore transport system permease protein" }, { "name":"AAFP32_01410 iron chelate uptake ABC transporter family permease subunit\tK25284 yclN; iron-siderophore transport system permease protein" }, { "name":"AAFP32_01420 ATP-binding cassette domain-containing protein\tK25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"AAFP32_00295 ATP-binding cassette domain-containing protein\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"AAFP32_08545 ABC transporter ATP-binding protein\tK02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]" }, { "name":"AAFP32_01210 metal ABC transporter substrate-binding protein\tK11601 mntC; manganese transport system substrate-binding protein" }, { "name":"AAFP32_01200 metal ABC transporter permease\tK11602 mntB; manganese transport system permease protein" }, { "name":"AAFP32_01205 metal ABC transporter ATP-binding protein\tK11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]" }, { "name":"AAFP32_12435 biotin transporter BioY\tK03523 bioY; biotin transport system substrate-specific component" }, { "name":"AAFP32_12425 energy-coupling factor transporter transmembrane component T\tK16783 bioN; biotin transport system permease protein" }, { "name":"AAFP32_12430 ABC transporter ATP-binding protein\tK16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]" }, { "name":"AAFP32_06440 histidine kinase\tK16923 qrtT; energy-coupling factor transport system substrate-specific component" }, { "name":"AAFP32_04190 energy-coupling factor transporter transmembrane component T\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"AAFP32_06445 energy-coupling factor transporter transmembrane component T\tK16785 ecfT; energy-coupling factor transport system permease protein" }, { "name":"AAFP32_04195 ATP-binding cassette domain-containing protein\tK01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]" }, { "name":"AAFP32_06450 ATP-binding cassette domain-containing protein\tK01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]" }, { "name":"AAFP32_04200 ECF transporter S component\tK16925 ykoE; energy-coupling factor transport system permease protein" }, { "name":"AAFP32_03690 zinc ABC transporter substrate-binding protein\tK02077 ABC.ZM.S; zinc\/manganese transport system substrate-binding protein" }, { "name":"AAFP32_03700 metal ABC transporter permease\tK02075 ABC.ZM.P; zinc\/manganese transport system permease protein" }, { "name":"AAFP32_03695 metal ABC transporter ATP-binding protein\tK02074 ABC.ZM.A; zinc\/manganese transport system ATP-binding protein" }, { "name":"AAFP32_01660 ABC transporter permease\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"AAFP32_01765 ABC transporter permease\tK09692 tagG; teichoic acid transport system permease protein" }, { "name":"AAFP32_01665 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"AAFP32_01770 ABC transporter ATP-binding protein\tK09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]" }, { "name":"AAFP32_14945 ABC transporter permease\tK25149 narB; polyether ionophore transport system permease protein" }, { "name":"AAFP32_14940 ABC transporter ATP-binding protein\tK25150 narA; polyether ionophore transport system ATP-binding protein" }, { "name":"AAFP32_12020 ftsX; (GenBank) permease-like cell division protein FtsX\tK09811 ftsX; cell division transport system permease protein" }, { "name":"AAFP32_12025 ftsE; (GenBank) cell division ATP-binding protein FtsE\tK09812 ftsE; cell division transport system ATP-binding protein" }, { "name":"AAFP32_08645 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_13195 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_15065 sodium ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_15895 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_15910 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_16000 ABC transporter permease\tK01992 ABC-2.P; ABC-2 type transport system permease protein" }, { "name":"AAFP32_08640 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"AAFP32_13190 ATP-binding cassette domain-containing protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"AAFP32_15070 ATP-binding cassette domain-containing protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"AAFP32_15890 ATP-binding cassette domain-containing protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"AAFP32_15915 ABC transporter ATP-binding protein\tK01990 ABC-2.A; ABC-2 type transport system ATP-binding protein" }, { "name":"AAFP32_07115 FtsX-like permease family protein\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"AAFP32_11710 ABC transporter permease\tK02004 ABC.CD.P; putative ABC transport system permease protein" }, { "name":"AAFP32_10125 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"AAFP32_11705 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"AAFP32_16255 ABC transporter ATP-binding protein\tK02003 ABC.CD.A; putative ABC transport system ATP-binding protein" }, { "name":"AAFP32_08615 sufC; (GenBank) Fe-S cluster assembly ATPase SufC\tK09013 sufC; Fe-S cluster assembly ATP-binding protein" }, { "name":"AAFP32_06765 DASS family sodium-coupled anion symporter\tK14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2\/3\/5" }, { "name":"AAFP32_09825 MATE family efflux transporter\tK26937 dinF; MATE family, multidrug efflux pump" }, { "name":"AAFP32_00230 MFS transporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"AAFP32_13075 MFS transporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"AAFP32_15650 MFS transporter\tK03762 proP; MFS transporter, MHS family, proline\/betaine transporter" }, { "name":"AAFP32_10130 MFS transporter\tK08194 dgoT; MFS transporter, ACS family, D-galactonate transporter" }, { "name":"AAFP32_03045 aromatic acid\/H+ symport family MFS transporter\tK05548 benK; MFS transporter, AAHS family, benzoate transport protein" }, { "name":"AAFP32_02355 MFS transporter\tK03449 MFS.CP; MFS transporter, CP family, cyanate transporter" }, { "name":"AAFP32_04050 MFS transporter\tK03449 MFS.CP; MFS transporter, CP family, cyanate transporter" }, { "name":"AAFP32_07120 MFS transporter\tK03449 MFS.CP; MFS transporter, CP family, cyanate transporter" }, { "name":"AAFP32_16530 MFS transporter\tK03449 MFS.CP; MFS transporter, CP family, cyanate transporter" }, { "name":"AAFP32_16485 Cmx\/CmrA family chloramphenicol efflux MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"AAFP32_02945 MFS transporter\tK19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein" }, { "name":"AAFP32_13400 MDR family MFS transporter\tK03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"AAFP32_02395 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"AAFP32_16460 MDR family MFS transporter\tK18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein" }, { "name":"AAFP32_14740 MFS transporter\tK08221 yitG; MFS transporter, ACDE family, multidrug resistance protein" }, { "name":"AAFP32_15240 MFS transporter\tK08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein" }, { "name":"AAFP32_14925 MFS transporter\tK06902 UMF1; MFS transporter, UMF1 family" }, { "name":"AAFP32_11105 MFS transporter\tK08369 ydjE; MFS transporter, putative metabolite:H+ symporter" }, { "name":"AAFP32_03365 aqpZ; (GenBank) aquaporin Z\tK06188 aqpZ; aquaporin" }, { "name":"AAFP32_04245 MIP\/aquaporin family protein\tK02440 glpF; glycerol uptake facilitator" }, { "name":"AAFP32_16465 potassium channel family protein\tK10716 kch; voltage-gated potassium channel" }, { "name":"AAFP32_10830 ammonium transporter\tK03320 amt; ammonium transporter, Amt family" }, { "name":"AAFP32_11880 VWA domain-containing protein\tK07114 yfbK; Ca-activated chloride channel homolog" }, { "name":"AAFP32_13570 mscL; (GenBank) large conductance mechanosensitive channel protein MscL\tK03282 mscL; large conductance mechanosensitive channel" }, { "name":"AAFP32_07315 mechanosensitive ion channel family protein\tK22044 ybiO; moderate conductance mechanosensitive channel" }, { "name":"AAFP32_02820 mgtE; (GenBank) magnesium transporter\tK06213 mgtE; magnesium transporter" }, { "name":"AAFP32_12985 magnesium and cobalt transport protein CorA\tK03284 corA; magnesium transporter" }, { "name":"AAFP32_02300 crcB; (GenBank) fluoride efflux transporter CrcB\tK06199 crcB; fluoride exporter" }, { "name":"AAFP32_02305 CrcB family protein\tK06199 crcB; fluoride exporter" }, { "name":"AAFP32_07090 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_07095 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_09170 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_06540 amino acid permease\tK11733 lysP; lysine-specific permease" }, { "name":"AAFP32_14485 APC family permease\tK14052 puuP; putrescine importer" }, { "name":"AAFP32_02700 amino acid permease\tK28029 UGA4; amino acid or GABA permease" }, { "name":"AAFP32_14365 APC family permease\tK28029 UGA4; amino acid or GABA permease" }, { "name":"AAFP32_15380 cation diffusion facilitator family transporter\tK16264 czcD; cobalt-zinc-cadmium efflux system protein" }, { "name":"AAFP32_04995 multidrug efflux SMR transporter\tK03297 emrE; small multidrug resistance pump" }, { "name":"AAFP32_05000 multidrug efflux SMR transporter\tK03297 emrE; small multidrug resistance pump" }, { "name":"AAFP32_02640 EamA family transporter\tK15268 eamA; O-acetylserine\/cysteine efflux transporter" }, { "name":"AAFP32_13965 EamA family transporter\tK15268 eamA; O-acetylserine\/cysteine efflux transporter" }, { "name":"AAFP32_04435 rarD; (GenBank) EamA family transporter RarD\tK05786 rarD; chloramphenicol-sensitive protein RarD" }, { "name":"AAFP32_08425 DMT family transporter\tK09936 TC.BAT2; bacterial\/archaeal transporter family-2 protein" }, { "name":"AAFP32_05520 GntP family permease\tK03299 TC.GNTP; gluconate:H+ symporter, GntP family" }, { "name":"AAFP32_09340 L-lactate permease\tK03303 lutP; lactate permease" }, { "name":"AAFP32_10510 L-lactate permease\tK03303 lutP; lactate permease" }, { "name":"AAFP32_01145 BCCT family transporter\tK05020 opuD; glycine betaine transporter" }, { "name":"AAFP32_05500 BCCT family transporter\tK05020 opuD; glycine betaine transporter" }, { "name":"AAFP32_01220 betT; (GenBank) choline BCCT transporter BetT\tK02168 betT; choline\/glycine\/proline betaine transport protein" }, { "name":"AAFP32_10005 BCCT family transporter\tK02168 betT; choline\/glycine\/proline betaine transport protein" }, { "name":"AAFP32_13440 betT; (GenBank) choline BCCT transporter BetT\tK02168 betT; choline\/glycine\/proline betaine transport protein" }, { "name":"AAFP32_14920 BCCT family transporter\tK02168 betT; choline\/glycine\/proline betaine transport protein" }, { "name":"AAFP32_13340 calcium:proton antiporter\tK07300 chaA; Ca2+:H+ antiporter" }, { "name":"AAFP32_04965 putP; (GenBank) sodium\/proline symporter PutP\tK11928 putP; sodium\/proline symporter" }, { "name":"AAFP32_04275 cation acetate symporter\tK14393 actP; cation\/acetate symporter" }, { "name":"AAFP32_11400 nhaA; (GenBank) Na+\/H+ antiporter NhaA\tK03313 nhaA; Na+:H+ antiporter, NhaA family" }, { "name":"AAFP32_05405 nhaC; (GenBank) Na+\/H+ antiporter NhaC\tK03315 nhaC; Na+:H+ antiporter, NhaC family" }, { "name":"AAFP32_15190 Na+\/H+ antiporter\tK24163 nhaK; monovalent cation\/hydrogen antiporter" }, { "name":"AAFP32_04290 TrkH family potassium uptake protein\tK03498 trkH; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_13415 potassium transporter TrkG\tK03498 trkH; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_04285 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_09510 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_09515 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_13420 TrkA family potassium uptake protein\tK03499 trkA; trk\/ktr system potassium uptake protein" }, { "name":"AAFP32_00110 nucleobase:cation symporter-2 family protein\tK24206 uacT; uric acid transporter" }, { "name":"AAFP32_03230 nucleobase:cation symporter-2 family protein\tK24206 uacT; uric acid transporter" }, { "name":"AAFP32_03205 NCS2 family permease\tK06901 pbuG; adenine\/guanine\/hypoxanthine permease" }, { "name":"AAFP32_14330 chrA; (GenBank) chromate efflux transporter\tK07240 chrA; chromate transporter" }, { "name":"AAFP32_11365 SulP family inorganic anion transporter\tK03321 TC.SULP; sulfate permease, SulP family" }, { "name":"AAFP32_16120 SulP family inorganic anion transporter\tK03321 TC.SULP; sulfate permease, SulP family" }, { "name":"AAFP32_01195 Nramp family divalent metal transporter\tK03322 mntH; manganese transport protein" }, { "name":"AAFP32_00840 DctP family TRAP transporter solute-binding subunit\tK11688 dctP; TRAP-type transport system periplasmic protein" }, { "name":"AAFP32_10275 dctP; (GenBank) TRAP transporter substrate-binding protein DctP\tK11688 dctP; TRAP-type transport system periplasmic protein" }, { "name":"AAFP32_00835 TRAP transporter small permease\tK11689 dctQ; TRAP-type transport system small permease protein" }, { "name":"AAFP32_10285 TRAP transporter small permease\tK11689 dctQ; TRAP-type transport system small permease protein" }, { "name":"AAFP32_00830 TRAP transporter large permease\tK11690 dctM; TRAP-type transport system large permease protein" }, { "name":"AAFP32_10280 TRAP transporter large permease\tK11690 dctM; TRAP-type transport system large permease protein" }, { "name":"AAFP32_06365 ArsA family ATPase\tK01551 arsA; arsenite\/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]" }, { "name":"AAFP32_07630 arsenic resistance protein\tK03325 ACR3; arsenite transporter" }, { "name":"AAFP32_13320 arsB; (GenBank) ACR3 family arsenite efflux transporter\tK03325 ACR3; arsenite transporter" }, { "name":"AAFP32_07515 DUF4040 family protein\tK05565 mnhA; multicomponent Na+:H+ antiporter subunit A" }, { "name":"AAFP32_15520 Na+\/H+ antiporter subunit A\tK05565 mnhA; multicomponent Na+:H+ antiporter subunit A" }, { "name":"AAFP32_07520 cation:proton antiporter subunit C\tK05567 mnhC; multicomponent Na+:H+ antiporter subunit C" }, { "name":"AAFP32_15515 Na(+)\/H(+) antiporter subunit C\tK05567 mnhC; multicomponent Na+:H+ antiporter subunit C" }, { "name":"AAFP32_07525 monovalent cation\/H+ antiporter subunit D family protein\tK05568 mnhD; multicomponent Na+:H+ antiporter subunit D" }, { "name":"AAFP32_15510 Na+\/H+ antiporter subunit D\tK05568 mnhD; multicomponent Na+:H+ antiporter subunit D" }, { "name":"AAFP32_07530 Na+\/H+ antiporter subunit E\tK05569 mnhE; multicomponent Na+:H+ antiporter subunit E" }, { "name":"AAFP32_15505 Na+\/H+ antiporter subunit E\tK05569 mnhE; multicomponent Na+:H+ antiporter subunit E" }, { "name":"AAFP32_15500 monovalent cation\/H+ antiporter complex subunit F\tK05570 mnhF; multicomponent Na+:H+ antiporter subunit F" }, { "name":"AAFP32_07540 monovalent cation\/H(+) antiporter subunit G\tK05571 mnhG; multicomponent Na+:H+ antiporter subunit G" }, { "name":"AAFP32_15495 mnhG; (GenBank) monovalent cation\/H(+) antiporter subunit G\tK05571 mnhG; multicomponent Na+:H+ antiporter subunit G" }, { "name":"AAFP32_09940 lipid II flippase MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"AAFP32_16345 murJ; (GenBank) murein biosynthesis integral membrane protein MurJ\tK03980 murJ; putative peptidoglycan lipid II flippase" }, { "name":"AAFP32_05315 AEC family transporter\tK13936 mdcF; malonate transporter and related proteins" }, { "name":"AAFP32_08180 AEC family transporter\tK13936 mdcF; malonate transporter and related proteins" }, { "name":"AAFP32_14700 LysE\/ArgO family amino acid transporter\tK06895 lysE; L-lysine exporter family protein LysE\/ArgO" }, { "name":"AAFP32_12465 LysE family translocator\tK05835 rhtC; threonine efflux protein" }, { "name":"AAFP32_14015 AzlC family ABC transporter permease\tK26605 azlC; branched chain amino acid efflux pump" }, { "name":"AAFP32_14010 AzlD domain-containing protein\tK26606 azlD; branched chain amino acid efflux pump" }, { "name":"AAFP32_00590 tripartite tricarboxylate transporter permease\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02400 tripartite tricarboxylate transporter permease\tK07793 tctA; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_00585 tripartite tricarboxylate transporter TctB family protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02405 tripartite tricarboxylate transporter TctB family protein\tK07794 tctB; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_00580 tripartite tricarboxylate transporter substrate-binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02410 tripartite tricarboxylate transporter substrate-binding protein\tK07795 tctC; putative tricarboxylic transport membrane protein" }, { "name":"AAFP32_02130 AI-2E family transporter\tK20469 K20469; putative heme transporter" }, { "name":"AAFP32_06210 AI-2E family transporter\tK20469 K20469; putative heme transporter" }, { "name":"AAFP32_03340 queuosine precursor transporter\tK09125 yhhQ; queuosine precursor transporter" }, { "name":"AAFP32_15400 VIT1\/CCC1 family protein\tK22736 VIT; vacuolar iron transporter family protein" }, { "name":"AAFP32_00020 FtsW\/RodA\/SpoVE family cell cycle protein\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_09680 ftsW; (GenBank) putative lipid II flippase FtsW\tK03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]" }, { "name":"AAFP32_07545 efeU; (GenBank) iron uptake transporter permease EfeU\tK07243 FTR; high-affinity iron transporter" }, { "name":"AAFP32_07550 efeO; (GenBank) iron uptake system protein EfeO\tK07224 efeO; iron uptake system component EfeO" }, { "name":"AAFP32_07555 efeB; (GenBank) iron uptake transporter deferrochelatase\/peroxidase subunit\tK16301 efeB; deferrochelatase\/peroxidase EfeB [EC:1.11.1.-]" }, { "name":"AAFP32_06375 carbon starvation protein A\tK06200 cstA; carbon starvation protein" }, { "name":"AAFP32_04350 cytochrome c biogenesis protein CcdA\tK06196 ccdA; cytochrome c-type biogenesis protein" }, { "name":"AAFP32_14990 polysaccharide biosynthesis tyrosine autokinase\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"AAFP32_15005 polysaccharide biosynthesis tyrosine autokinase\tK25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]" }, { "name":"AAFP32_08880 nicotinamide mononucleotide transporter family protein\tK03811 pnuC; nicotinamide mononucleotide transporter" }, { "name":"AAFP32_13145 TspO\/MBR family protein\tK05770 TSPO; translocator protein" }, { "name":"AAFP32_05815 MgtC\/SapB family protein\tK07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein" }, { "name":"AAFP32_03275 uraH; (GenBank) hydroxyisourate hydrolase\tK07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]" }, { "name":"AAFP32_05330 DUF202 domain-containing protein\tK00389 yidH; inner membrane protein YidH" }, { "name":"AAFP32_01555 copper resistance CopC family protein\tK07156 copC; copper resistance protein C" } ] }, { "name":"02044 Secretion system [BR:bkr02044]", "children":[ { "name":"AAFP32_03775 TadA family conjugal transfer-associated ATPase\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"AAFP32_12060 ATPase, T2SS\/T4P\/T4SS family\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"AAFP32_03780 type II secretion system F family protein\tK12510 tadB; tight adherence protein B" }, { "name":"AAFP32_12065 type II secretion system F family protein\tK12510 tadB; tight adherence protein B" }, { "name":"AAFP32_03785 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"AAFP32_12070 type II secretion system F family protein\tK12511 tadC; tight adherence protein C" }, { "name":"AAFP32_09645 YggT family protein\tK02221 yggT; YggT family protein" }, { "name":"AAFP32_09245 ComEA family DNA-binding protein\tK02237 comEA; competence protein ComEA" }, { "name":"AAFP32_09240 ComEC\/Rec2 family competence protein\tK02238 comEC; competence protein ComEC" }, { "name":"AAFP32_06110 secA; (GenBank) preprotein translocase subunit SecA\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_08280 secA2; (GenBank) accessory Sec system translocase SecA2\tK03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]" }, { "name":"AAFP32_09070 secD; (GenBank) protein translocase subunit SecD\tK03072 secD; preprotein translocase subunit SecD" }, { "name":"AAFP32_04660 secE; (GenBank) preprotein translocase subunit SecE\tK03073 secE; preprotein translocase subunit SecE" }, { "name":"AAFP32_09065 secF; (GenBank) protein translocase subunit SecF\tK03074 secF; preprotein translocase subunit SecF" }, { "name":"AAFP32_08685 secG; (GenBank) preprotein translocase subunit SecG\tK03075 secG; preprotein translocase subunit SecG" }, { "name":"AAFP32_04900 secY; (GenBank) preprotein translocase subunit SecY\tK03076 secY; preprotein translocase subunit SecY" }, { "name":"AAFP32_10825 ffh; (GenBank) signal recognition particle protein\tK03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]" }, { "name":"AAFP32_10835 ftsY; (GenBank) signal recognition particle-docking protein FtsY\tK03110 ftsY; fused signal recognition particle receptor" }, { "name":"AAFP32_03460 YidC\/Oxa1 family membrane protein insertase\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_16395 yidC; (GenBank) membrane protein insertase YidC\tK03217 yidC; YidC\/Oxa1 family membrane protein insertase" }, { "name":"AAFP32_08295 tatA; (GenBank) Sec-independent protein translocase subunit TatA\tK03116 tatA; sec-independent protein translocase protein TatA" }, { "name":"AAFP32_06885 twin-arginine translocase TatA\/TatE family subunit\tK03117 tatB; sec-independent protein translocase protein TatB" }, { "name":"AAFP32_08290 tatC; (GenBank) twin-arginine translocase subunit TatC\tK03118 tatC; sec-independent protein translocase protein TatC" } ] }, { "name":"02042 Bacterial toxins [BR:bkr02042]", "children":[ { "name":"AAFP32_07090 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_07095 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_09170 hemolysin family protein\tK03699 tlyC; magnesium and cobalt exporter, CNNM family" }, { "name":"AAFP32_06235 hemolysin III family protein\tK11068 hlyIII; hemolysin III" } ] }, { "name":"02022 Two-component system [BR:bkr02022]", "children":[ { "name":"AAFP32_13955 ATP-binding protein\tK07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]" }, { "name":"AAFP32_13950 response regulator transcription factor\tK07776 regX3; two-component system, OmpR family, response regulator RegX3" }, { "name":"AAFP32_15490 response regulator transcription factor\tK07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR" }, { "name":"AAFP32_06085 mtrB; (GenBank) MtrAB system histidine kinase MtrB\tK07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]" }, { "name":"AAFP32_06080 mtrA; (GenBank) MtrAB system response regulator MtrA\tK07670 mtrA; two-component system, OmpR family, response regulator MtrA" }, { "name":"AAFP32_04760 HAMP domain-containing sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_13675 HAMP domain-containing sensor histidine kinase\tK02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_04755 response regulator transcription factor\tK02483 K02483; two-component system, OmpR family, response regulator" }, { "name":"AAFP32_13670 response regulator transcription factor\tK02483 K02483; two-component system, OmpR family, response regulator" }, { "name":"AAFP32_15905 histidine kinase\tK07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]" }, { "name":"AAFP32_15900 response regulator transcription factor\tK07693 desR; two-component system, NarL family, response regulator DesR" }, { "name":"AAFP32_10485 ATP-binding protein\tK02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]" }, { "name":"AAFP32_06160 PAS domain-containing sensor histidine kinase\tK00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]" }, { "name":"AAFP32_08780 response regulator\tK22010 pdtaR; two-component system, response regulator PdtaR" } ] }, { "name":"02035 Bacterial motility proteins [BR:bkr02035]", "children":[ { "name":"AAFP32_03775 TadA family conjugal transfer-associated ATPase\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" }, { "name":"AAFP32_12060 ATPase, T2SS\/T4P\/T4SS family\tK02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]" } ] }, { "name":"03037 Cilium and associated proteins" }, { "name":"04812 Cytoskeleton proteins [BR:bkr04812]", "children":[ { "name":"AAFP32_09660 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"AAFP32_08145 ParA family protein\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_09910 AAA family ATPase\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_16380 ParA family protein\tK03496 parA; chromosome partitioning protein" }, { "name":"AAFP32_16370 ParB\/RepB\/Spo0J family partition protein\tK03497 parB; ParB family transcriptional regulator, chromosome partitioning protein" } ] }, { "name":"04147 Exosome [BR:bkr04147]", "children":[ { "name":"AAFP32_05245 eno; (GenBank) phosphopyruvate hydratase\tK01689 ENO1_2_3; enolase 1\/2\/3 [EC:4.2.1.11]" }, { "name":"AAFP32_08700 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_09290 glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_14300 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase\tK00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]" }, { "name":"AAFP32_08695 phosphoglycerate kinase\tK00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]" }, { "name":"AAFP32_08795 pyk; (GenBank) pyruvate kinase\tK00873 PK; pyruvate kinase [EC:2.7.1.40]" }, { "name":"AAFP32_16540 peptidylprolyl isomerase\tK03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]" }, { "name":"AAFP32_14075 dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" }, { "name":"AAFP32_15385 SPFH domain-containing protein\tK07192 FLOT; flotillin" }, { "name":"AAFP32_12630 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_13735 groL; (GenBank) chaperonin GroEL\tK04077 groEL; chaperonin GroEL [EC:5.6.1.7]" }, { "name":"AAFP32_14570 dnaK; (GenBank) molecular chaperone DnaK\tK04043 dnaK; molecular chaperone DnaK" }, { "name":"AAFP32_08680 glucose-6-phosphate isomerase\tK01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]" }, { "name":"AAFP32_12455 GuaB3 family IMP dehydrogenase-related protein\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"AAFP32_12580 guaB; (GenBank) IMP dehydrogenase\tK00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]" }, { "name":"AAFP32_04795 tuf; (GenBank) elongation factor Tu\tK02358 tuf; elongation factor Tu" }, { "name":"AAFP32_11060 HIT family protein\tK02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]" }, { "name":"AAFP32_02005 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_02385 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_05455 AMP-binding protein\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_09275 AMP-dependent synthetase\/ligase\tK01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]" }, { "name":"AAFP32_00475 hypothetical protein\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_03865 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_07245 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_08450 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_15680 acetyl-CoA C-acetyltransferase\tK00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]" }, { "name":"AAFP32_06040 ahcY; (GenBank) adenosylhomocysteinase\tK01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]" }, { "name":"AAFP32_04905 adenylate kinase\tK00939 adk; adenylate kinase [EC:2.7.4.3]" }, { "name":"AAFP32_11200 adenine phosphoribosyltransferase\tK00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]" }, { "name":"AAFP32_10055 argH; (GenBank) argininosuccinate lyase\tK01755 argH; argininosuccinate lyase [EC:4.3.2.1]" }, { "name":"AAFP32_14370 argG; (GenBank) argininosuccinate synthase\tK01940 argG; argininosuccinate synthase [EC:6.3.4.5]" }, { "name":"AAFP32_04250 glpK; (GenBank) glycerol kinase GlpK\tK00864 glpK; glycerol kinase [EC:2.7.1.30]" }, { "name":"AAFP32_02705 glutamine synthetase family protein\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07975 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_07990 glnA; (GenBank) type I glutamate--ammonia ligase\tK01915 glnA; glutamine synthetase [EC:6.3.1.2]" }, { "name":"AAFP32_04325 hemB; (GenBank) porphobilinogen synthase\tK01698 hemB; porphobilinogen synthase [EC:4.2.1.24]" }, { "name":"AAFP32_08190 4a-hydroxytetrahydrobiopterin dehydratase\tK01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]" }, { "name":"AAFP32_11130 serA; (GenBank) phosphoglycerate dehydrogenase\tK00058 serA; D-3-phosphoglycerate dehydrogenase \/ 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]" }, { "name":"AAFP32_05160 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase\/IMP cyclohydrolase\tK00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase \/ IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]" }, { "name":"AAFP32_08025 lpdA; (GenBank) dihydrolipoyl dehydrogenase\tK00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]" }, { "name":"AAFP32_00220 electron transfer flavoprotein subunit alpha\/FixB family protein\tK03522 fixB; electron transfer flavoprotein alpha subunit" }, { "name":"AAFP32_01280 electron transfer flavoprotein subunit alpha\/FixB family protein\tK03522 fixB; electron transfer flavoprotein alpha subunit" }, { "name":"AAFP32_10575 Glu\/Leu\/Phe\/Val dehydrogenase dimerization domain-containing protein\tK00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]" }, { "name":"AAFP32_08690 tpiA; (GenBank) triose-phosphate isomerase\tK01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]" }, { "name":"AAFP32_13975 phosphoglyceromutase\tK01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]" } ] }, { "name":"02048 Prokaryotic defense system [BR:bkr02048]", "children":[ { "name":"AAFP32_10145 UvrD-helicase domain-containing protein\tK07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]" }, { "name":"AAFP32_00885 DNA cytosine methyltransferase\tK00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]" }, { "name":"AAFP32_01340 site-specific DNA-methyltransferase\tK07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]" }, { "name":"AAFP32_01155 type II toxin-antitoxin system death-on-curing family toxin\tK07341 doc; death on curing protein" }, { "name":"AAFP32_06315 type II toxin-antitoxin system RelE\/ParE family toxin\tK07334 higB-1; toxin HigB-1" }, { "name":"AAFP32_06320 HigA family addiction module antitoxin\tK21498 higA-1; antitoxin HigA-1" }, { "name":"AAFP32_09660 ftsZ; (GenBank) cell division protein FtsZ\tK03531 ftsZ; cell division protein FtsZ" }, { "name":"AAFP32_07770 gluQRS; (GenBank) tRNA glutamyl-Q(34) synthetase GluQRS\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_11010 gltX; (GenBank) glutamate--tRNA ligase\tK01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]" }, { "name":"AAFP32_01995 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein\tK28189 takA; serine protein kinase TakA antitoxin" }, { "name":"AAFP32_11325 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" }, { "name":"AAFP32_12495 cysteine desulfurase family protein\tK04487 iscS; cysteine desulfurase [EC:2.8.1.7]" } ] }, { "name":"04030 G protein-coupled receptors" }, { "name":"04050 Cytokine receptors" }, { "name":"04054 Pattern recognition receptors" }, { "name":"03310 Nuclear receptors" }, { "name":"04040 Ion channels" }, { "name":"04031 GTP-binding proteins" }, { "name":"04052 Cytokines and neuropeptides" }, { "name":"04515 Cell adhesion molecules" }, { "name":"04090 CD molecules" }, { "name":"01504 Antimicrobial resistance genes [BR:bkr01504]", "children":[ { "name":"AAFP32_10655 aminoglycoside phosphotransferase family protein\tK04343 strB; streptomycin 6-kinase [EC:2.7.1.72]" }, { "name":"AAFP32_05640 macrolide 2'-phosphotransferase\tK06979 mph; macrolide phosphotransferase" }, { "name":"AAFP32_06965 aminoglycoside phosphotransferase\tK06979 mph; macrolide phosphotransferase" }, { "name":"AAFP32_16485 Cmx\/CmrA family chloramphenicol efflux MFS transporter\tK18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein" }, { "name":"AAFP32_02395 MFS transporter\tK08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein" }, { "name":"AAFP32_09580 M56 family metallopeptidase\tK02172 blaR1; bla regulator protein blaR1" }, { "name":"AAFP32_09575 BlaI\/MecI\/CopY family transcriptional regulator\tK02171 blaI; BlaI family transcriptional regulator, penicillinase repressor" }, { "name":"AAFP32_14080 serine hydrolase\tK17836 penP; beta-lactamase class A [EC:3.5.2.6]" }, { "name":"AAFP32_03175 endonuclease\/exonuclease\/phosphatase family protein\tK18353 vanJ; vancomycin resistance protein VanJ" }, { "name":"AAFP32_16125 MerR family DNA-binding transcriptional regulator\tK19591 cueR; MerR family transcriptional regulator, copper efflux regulator" } ] }, { "name":"00535 Proteoglycans" }, { "name":"00536 Glycosaminoglycan binding proteins" }, { "name":"00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bkr00537]", "children":[ { "name":"AAFP32_14075 dipeptidase\tK01273 DPEP; membrane dipeptidase [EC:3.4.13.19]" } ] }, { "name":"04091 Lectins" }, { "name":"04990 Domain-containing proteins not elsewhere classified" } ] }, { "name":"09185 Viral protein families", "children":[ { "name":"03200 Viral proteins" }, { "name":"03210 Viral fusion proteins" } ] }, { "name":"09184 RNA family", "children":[ { "name":"03100 Non-coding RNAs [BR:bkr03100]", "children":[ { "name":"AAFP32_07570 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_07645 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_16455 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_16470 tRNA-Ala\tK14218 tRNA-Ala; tRNA Ala" }, { "name":"AAFP32_07105 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_07260 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_13585 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_14385 tRNA-Arg\tK14219 tRNA-Arg; tRNA Arg" }, { "name":"AAFP32_07785 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"AAFP32_10850 tRNA-Asn\tK14220 tRNA-Asn; tRNA Asn" }, { "name":"AAFP32_02860 tRNA-Asp\tK14221 tRNA-Asp; tRNA Asp" }, { "name":"AAFP32_09145 tRNA-Cys\tK14222 tRNA-Cys; tRNA Cys" }, { "name":"AAFP32_05185 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"AAFP32_11000 tRNA-Gln\tK14223 tRNA-Gln; tRNA Gln" }, { "name":"AAFP32_02865 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"AAFP32_10995 tRNA-Glu\tK14224 tRNA-Glu; tRNA Glu" }, { "name":"AAFP32_04280 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_07350 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_09150 tRNA-Gly\tK14225 tRNA-Gly; tRNA Gly" }, { "name":"AAFP32_11450 tRNA-His\tK14226 tRNA-His; tRNA His" }, { "name":"AAFP32_16450 tRNA-Ile\tK14227 tRNA-Ile; tRNA Ile" }, { "name":"AAFP32_00040 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_05295 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_08435 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_08785 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_11520 tRNA-Leu\tK14228 tRNA-Leu; tRNA Leu" }, { "name":"AAFP32_11480 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"AAFP32_14225 tRNA-Lys\tK14229 tRNA-Lys; tRNA Lys" }, { "name":"AAFP32_04490 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07025 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07030 tRNA-Met\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_07805 tRNA-Ile\tK14230 tRNA-Met; tRNA Met" }, { "name":"AAFP32_02855 tRNA-Phe\tK14231 tRNA-Phe; tRNA Phe" }, { "name":"AAFP32_07345 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_07895 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_09795 tRNA-Pro\tK14232 tRNA-Pro; tRNA Pro" }, { "name":"AAFP32_03200 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_03515 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_14440 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_14490 tRNA-Ser\tK14233 tRNA-Ser; tRNA Ser" }, { "name":"AAFP32_03855 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_04485 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_13835 tRNA-Thr\tK14234 tRNA-Thr; tRNA Thr" }, { "name":"AAFP32_04655 tRNA-Trp\tK14235 tRNA-Trp; tRNA Trp" }, { "name":"AAFP32_04460 tRNA-Tyr\tK14236 tRNA-Tyr; tRNA Tyr" }, { "name":"AAFP32_07905 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_09135 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_09140 tRNA-Val\tK14237 tRNA-Val; tRNA Val" }, { "name":"AAFP32_16165 tRNA-Sec\tK14238 tRNA-Sec; tRNA Sec" }, { "name":"AAFP32_02480 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_05045 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_10020 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_15785 16S ribosomal RNA\tK01977 16SrRNA; 16S ribosomal RNA" }, { "name":"AAFP32_02485 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_05050 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_10015 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_15780 23S ribosomal RNA\tK01980 23SrRNA; 23S ribosomal RNA" }, { "name":"AAFP32_03510 ffs; (GenBank) signal recognition particle sRNA small type\tK01983 ffs; signal recognition particle 4.5S RNA" } ] } ] } ] }, { "name":"09190 Not Included in Pathway or Brite", "children":[ { "name":"09191 Unclassified: metabolism", "children":[ { "name":"99980 Enzymes with EC numbers", "children":[ { "name":"AAFP32_07595 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein\tK17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108]" }, { "name":"AAFP32_13910 S-(hydroxymethyl)mycothiol dehydrogenase\tK00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]" }, { "name":"AAFP32_00700 aldo\/keto reductase\tK06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]" }, { "name":"AAFP32_11205 aldo\/keto reductase\tK06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]" }, { "name":"AAFP32_05510 pdxA; (GenBank) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA\tK22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase \/ 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]" }, { "name":"AAFP32_15285 NAD-dependent epimerase\/dehydratase family protein\tK22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]" }, { "name":"AAFP32_14275 mgrA; (GenBank) L-glyceraldehyde 3-phosphate reductase\tK19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]" }, { "name":"AAFP32_15655 D-arabinono-1,4-lactone oxidase\tK05888 K05888; L-gulono-1,4-lactone dehydrogenase [EC:1.1.2.-]" }, { "name":"AAFP32_15945 (2Fe-2S)-binding protein\tK03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]" }, { "name":"AAFP32_15950 FAD binding domain-containing protein\tK03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]" }, { "name":"AAFP32_15940 cutA; (GenBank) aerobic carbon-monoxide dehydrogenase large subunit\tK03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]" }, { "name":"AAFP32_14810 NADP-dependent oxidoreductase\tK23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]" }, { "name":"AAFP32_04425 geranylgeranyl reductase family protein\tK21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]" }, { "name":"AAFP32_16040 NADH:flavin oxidoreductase\tK22551 hpbA; N-methyl-L-proline demethylase [EC:1.5.3.-]" }, { "name":"AAFP32_06175 NAD(P)H-quinone dehydrogenase\tK23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]" }, { "name":"AAFP32_02030 NADPH:quinone oxidoreductase family protein\tK00344 qor; NADPH:quinone reductase [EC:1.6.5.5]" }, { "name":"AAFP32_05475 NADPH:quinone oxidoreductase family protein\tK00344 qor; NADPH:quinone reductase [EC:1.6.5.5]" }, { "name":"AAFP32_10090 quinone oxidoreductase\tK00344 qor; NADPH:quinone reductase [EC:1.6.5.5]" }, { "name":"AAFP32_07985 mycothione reductase\tK17883 mtr; mycothione reductase [EC:1.8.1.15]" }, { "name":"AAFP32_03990 msrA; (GenBank) peptide-methionine (S)-S-oxide reductase MsrA\tK07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]" }, { "name":"AAFP32_09420 msrB; (GenBank) peptide-methionine (R)-S-oxide reductase MsrB\tK07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]" }, { "name":"AAFP32_09280 glutathione S-transferase C-terminal domain-containing protein\tK07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]" }, { "name":"AAFP32_14380 alpha\/beta hydrolase\tK00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]" }, { "name":"AAFP32_15450 Dyp-type peroxidase\tK15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]" }, { "name":"AAFP32_03260 bcp; (GenBank) thioredoxin-dependent thiol peroxidase\tK03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"AAFP32_11515 bcp; (GenBank) thioredoxin-dependent thiol peroxidase\tK03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"AAFP32_06640 tpx; (GenBank) thiol peroxidase\tK11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]" }, { "name":"AAFP32_02140 organic hydroperoxide resistance protein\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"AAFP32_11445 organic hydroperoxide resistance protein\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"AAFP32_15835 OsmC family protein\tK04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]" }, { "name":"AAFP32_12035 globin domain-containing protein\tK05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]" }, { "name":"AAFP32_01325 antibiotic biosynthesis monooxygenase\tK21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]" }, { "name":"AAFP32_08185 ferritin\tK02217 ftnA; ferritin [EC:1.16.3.2]" }, { "name":"AAFP32_04440 FAD-dependent oxidoreductase\tK00528 fpr; ferredoxin\/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]" }, { "name":"AAFP32_13315 arsenate reductase ArsC\tK03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]" }, { "name":"AAFP32_11195 hypothetical protein\tK00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]" }, { "name":"AAFP32_14155 mshD; (GenBank) mycothiol synthase\tK15520 mshD; mycothiol synthase [EC:2.3.1.189]" }, { "name":"AAFP32_07600 3-keto-5-aminohexanoate cleavage protein\tK27837 cdhC; 3-dehydrocarnitine:acetyl-CoA trimethylamine transferase [EC:2.3.1.317]" }, { "name":"AAFP32_08055 leucyl\/phenylalanyl-tRNA--protein transferase\tK00684 aat; leucyl\/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]" }, { "name":"AAFP32_15275 3-oxoacyl-ACP synthase III\tK22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]" }, { "name":"AAFP32_13995 glycosyltransferase\tK15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]" }, { "name":"AAFP32_01060 lgt; (GenBank) prolipoprotein diacylglyceryl transferase\tK13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]" }, { "name":"AAFP32_05515 four-carbon acid sugar kinase family protein\tK22129 dtnK; D-threonate\/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]" }, { "name":"AAFP32_10925 DAK2 domain-containing protein\tK07030 fakA; fatty acid kinase [EC:2.7.2.18]" }, { "name":"AAFP32_07980 bifunctional [glutamine synthetase] adenylyltransferase\/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase\tK00982 glnE; [glutamine synthetase] adenylyltransferase \/ [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]" }, { "name":"AAFP32_12625 PEP\/pyruvate-binding domain-containing protein\tK22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]" }, { "name":"AAFP32_01105 CoA transferase\tK18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19]" }, { "name":"AAFP32_00565 CaiB\/BaiF CoA-transferase family protein\tK18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]" }, { "name":"AAFP32_08130 alpha\/beta fold hydrolase\tK03928 yvaK; carboxylesterase [EC:3.1.1.1]" }, { "name":"AAFP32_02995 O-acetyl-ADP-ribose deacetylase\tK23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]" }, { "name":"AAFP32_06705 carboxylesterase family protein\tK03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]" }, { "name":"AAFP32_01270 thioesterase family protein\tK07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]" }, { "name":"AAFP32_07300 acyl-CoA thioesterase\tK07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]" }, { "name":"AAFP32_05240 tyrosine-protein phosphatase\tK01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]" }, { "name":"AAFP32_07505 histidine phosphatase family protein\tK22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]" }, { "name":"AAFP32_06925 PHP domain-containing protein\tK07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]" }, { "name":"AAFP32_08560 histidine phosphatase family protein\tK08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]" }, { "name":"AAFP32_02445 betC; (GenBank) choline-sulfatase\tK01133 betC; choline-sulfatase [EC:3.1.6.6]" }, { "name":"AAFP32_12645 TatD family hydrolase\tK03424 tatD; TatD DNase family protein [EC:3.1.21.-]" }, { "name":"AAFP32_07230 nucS; (GenBank) endonuclease NucS\tK07503 nucS; endonuclease [EC:3.1.-.-]" }, { "name":"AAFP32_03985 peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"AAFP32_08155 peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"AAFP32_11275 def; (GenBank) peptide deformylase\tK01462 PDF; peptide deformylase [EC:3.5.1.88]" }, { "name":"AAFP32_06810 PIG-L family deacetylase\tK15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]" }, { "name":"AAFP32_06225 mca; (GenBank) mycothiol conjugate amidase Mca\tK18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]" }, { "name":"AAFP32_05895 carbon-nitrogen hydrolase family protein\tK11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]" }, { "name":"AAFP32_00115 8-oxoguanine deaminase\tK18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]" }, { "name":"AAFP32_06060 MoxR family ATPase\tK03924 moxR; MoxR-like ATPase [EC:3.6.3.-]" }, { "name":"AAFP32_09725 AAA family ATPase\tK03924 moxR; MoxR-like ATPase [EC:3.6.3.-]" }, { "name":"AAFP32_11865 AAA family ATPase\tK03924 moxR; MoxR-like ATPase [EC:3.6.3.-]" }, { "name":"AAFP32_11700 lanKC; (GenBank) class III lanthionine synthetase LanKC\tK24914 lanKC; class III lanthionine synthetase [EC:3.13.2.4]" }, { "name":"AAFP32_11735 lanKC; (GenBank) class III lanthionine synthetase LanKC\tK24914 lanKC; class III lanthionine synthetase [EC:3.13.2.4]" }, { "name":"AAFP32_12320 NAD(P)H-hydrate dehydratase\tK23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase \/ NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]" }, { "name":"AAFP32_00725 pyridoxal-phosphate dependent enzyme\tK01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]" }, { "name":"AAFP32_02505 diaminopropionate ammonia-lyase\tK01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]" }, { "name":"AAFP32_04925 aminotransferase class I\/II-fold pyridoxal phosphate-dependent enzyme\tK26364 K26364; mimosinase [EC:4.3.3.8]" }, { "name":"AAFP32_08315 FKBP-type peptidyl-prolyl cis-trans isomerase\tK01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]" }, { "name":"AAFP32_15280 alpha\/beta fold hydrolase\tK22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]" }, { "name":"AAFP32_08385 mshC; (GenBank) cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase\tK15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]" }, { "name":"AAFP32_01685 carboxyl transferase domain-containing protein\tK01970 accD2; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]" }, { "name":"AAFP32_08855 carboxyl transferase domain-containing protein\tK04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]" }, { "name":"AAFP32_01680 biotin carboxylase N-terminal domain-containing protein\tK27596 accA2; acyl-CoA carboxylase subunit alpha [EC:6.4.1.-]" }, { "name":"AAFP32_05525 heavy metal translocating P-type ATPase\tK01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]" }, { "name":"AAFP32_06345 cation-translocating P-type ATPase\tK12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]" } ] }, { "name":"99981 Carbohydrate metabolism", "children":[ { "name":"AAFP32_04295 acetoin utilization protein AcuC\tK04768 acuC; acetoin utilization protein AcuC" }, { "name":"AAFP32_11385 lactate utilization protein B\tK18929 lldF; L-lactate dehydrogenase complex protein LldF" }, { "name":"AAFP32_11390 LUD domain-containing protein\tK00782 lldG; L-lactate dehydrogenase complex protein LldG" } ] }, { "name":"99982 Energy metabolism", "children":[ { "name":"AAFP32_13260 fdhD; (GenBank) formate dehydrogenase accessory sulfurtransferase FdhD\tK02379 fdhD; FdhD protein" }, { "name":"AAFP32_08605 sufU; (GenBank) Fe-S cluster assembly sulfur transfer protein SufU\tK04488 iscU; nitrogen fixation protein NifU and related proteins" }, { "name":"AAFP32_00215 electron transfer flavoprotein subunit beta\/FixA family protein\tK03521 fixA; electron transfer flavoprotein beta subunit" }, { "name":"AAFP32_01285 electron transfer flavoprotein subunit beta\/FixA family protein\tK03521 fixA; electron transfer flavoprotein beta subunit" }, { "name":"AAFP32_00685 FAD-dependent oxidoreductase\tK21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase" } ] }, { "name":"99983 Lipid metabolism", "children":[ { "name":"AAFP32_12600 acyl-CoA dehydrogenase family protein\tK09456 aidB; putative acyl-CoA dehydrogenase" }, { "name":"AAFP32_09250 DegV family protein\tK25232 fakB; fatty acid kinase fatty acid binding subunit" } ] }, { "name":"99984 Nucleotide metabolism", "children":[ { "name":"AAFP32_11855 nrdI; (GenBank) class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI\tK03647 nrdI; protein involved in ribonucleotide reduction" } ] }, { "name":"99985 Amino acid metabolism", "children":[ { "name":"AAFP32_07625 YggS family pyridoxal phosphate-dependent enzyme\tK06997 yggS; PLP dependent protein" }, { "name":"AAFP32_15555 YggS family pyridoxal phosphate-dependent enzyme\tK06997 yggS; PLP dependent protein" }, { "name":"AAFP32_15355 cupin\tK21700 bauB; beta-alanine degradation protein BauB" } ] }, { "name":"99986 Glycan metabolism", "children":[ { "name":"AAFP32_12640 ubiquitin-like domain-containing protein\tK21688 rpfB; resuscitation-promoting factor RpfB" }, { "name":"AAFP32_08220 transglycosylase family protein\tK21691 rpfE; resuscitation-promoting factor RpfE" } ] }, { "name":"99987 Cofactor metabolism", "children":[ { "name":"AAFP32_10255 AarF\/UbiB family protein\tK03688 ubiB; ubiquinone biosynthesis protein" }, { "name":"AAFP32_05355 AbgT family transporter\tK12942 abgT; aminobenzoyl-glutamate transport protein" } ] }, { "name":"99988 Secondary metabolism" }, { "name":"99999 Others", "children":[ { "name":"AAFP32_13295 DoxX family protein\tK15977 K15977; putative oxidoreductase" } ] } ] }, { "name":"09192 Unclassified: genetic information processing", "children":[ { "name":"99973 Transcription", "children":[ { "name":"AAFP32_13640 cold shock domain-containing protein\tK03704 cspA; cold shock protein" }, { "name":"AAFP32_13740 cold-shock protein\tK03704 cspA; cold shock protein" }, { "name":"AAFP32_16215 cold-shock protein\tK03704 cspA; cold shock protein" } ] }, { "name":"99974 Translation" }, { "name":"99975 Protein processing", "children":[ { "name":"AAFP32_05090 clpS; (GenBank) ATP-dependent Clp protease adapter ClpS\tK06891 clpS; ATP-dependent Clp protease adaptor protein ClpS" }, { "name":"AAFP32_07370 tig; (GenBank) trigger factor\tK03545 tig; trigger factor" }, { "name":"AAFP32_12010 smpB; (GenBank) SsrA-binding protein SmpB\tK03664 smpB; SsrA-binding protein" }, { "name":"AAFP32_04585 NrdH-redoxin\tK06191 nrdH; glutaredoxin-like protein NrdH" }, { "name":"AAFP32_11860 nrdH; (GenBank) glutaredoxin-like protein NrdH\tK06191 nrdH; glutaredoxin-like protein NrdH" }, { "name":"AAFP32_10770 YifB family Mg chelatase-like AAA ATPase\tK07391 comM; magnesium chelatase family protein" }, { "name":"AAFP32_04355 cytochrome c biogenesis protein ResB\tK07399 resB; cytochrome c biogenesis protein" }, { "name":"AAFP32_03220 xdhC; (GenBank) xanthine dehydrogenase accessory protein XdhC\tK07402 xdhC; xanthine dehydrogenase accessory factor" }, { "name":"AAFP32_15965 XdhC\/CoxI family protein\tK07402 xdhC; xanthine dehydrogenase accessory factor" } ] }, { "name":"99976 Replication and repair", "children":[ { "name":"AAFP32_06285 DNA recombination protein RmuC\tK09760 rmuC; DNA recombination protein RmuC" }, { "name":"AAFP32_10775 YraN family protein\tK07460 yraN; putative endonuclease" }, { "name":"AAFP32_08370 PD-(D\/E)XK nuclease family protein\tK07465 K07465; putative RecB family exonuclease" }, { "name":"AAFP32_10765 dprA; (GenBank) DNA-processing protein DprA\tK04096 smf; DNA processing protein" }, { "name":"AAFP32_01570 replication-associated recombination protein A\tK07478 ycaJ; putative ATPase" }, { "name":"AAFP32_09025 replication-associated recombination protein A\tK07478 ycaJ; putative ATPase" }, { "name":"AAFP32_00935 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"AAFP32_11765 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"AAFP32_12655 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"AAFP32_13605 IS30 family transposase\tK07482 K07482; transposase, IS30 family" }, { "name":"AAFP32_00925 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_07020 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_12110 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_12510 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_12925 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_14575 transposase\tK07483 K07483; transposase" }, { "name":"AAFP32_07655 IS110 family transposase\tK07486 K07486; transposase" }, { "name":"AAFP32_02920 IS256 family transposase\tK07493 K07493; putative transposase" }, { "name":"AAFP32_02925 DDE-type integrase\/transposase\/recombinase\tK07497 K07497; putative transposase" }, { "name":"AAFP32_12700 IS3 family transposase\tK07497 K07497; putative transposase" }, { "name":"AAFP32_14580 IS3 family transposase\tK07497 K07497; putative transposase" } ] }, { "name":"99979 Viral proteins" }, { "name":"99998 Others", "children":[ { "name":"AAFP32_13690 PspA\/IM30 family protein\tK03969 pspA; phage shock protein A" } ] } ] }, { "name":"09193 Unclassified: signaling and cellular processes", "children":[ { "name":"99977 Transport", "children":[ { "name":"AAFP32_13920 amino acid permease\tK03293 TC.AAT; amino acid transporter, AAT family" }, { "name":"AAFP32_00545 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"AAFP32_13885 amino acid permease\tK03294 TC.APA; basic amino acid\/polyamine antiporter, APA family" }, { "name":"AAFP32_04005 efflux RND transporter permease subunit\tK03296 TC.HAE1; hydrophobic\/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family" }, { "name":"AAFP32_07700 oligopeptide:H+ symporter\tK03305 TC.POT; proton-dependent oligopeptide transporter, POT family" }, { "name":"AAFP32_01240 inorganic phosphate transporter\tK03306 TC.PIT; inorganic phosphate transporter, PiT family" }, { "name":"AAFP32_14205 inorganic phosphate transporter\tK03306 TC.PIT; inorganic phosphate transporter, PiT family" }, { "name":"AAFP32_14400 inorganic phosphate transporter\tK03306 TC.PIT; inorganic phosphate transporter, PiT family" }, { "name":"AAFP32_05385 sodium\/proline symporter\tK03307 TC.SSS; solute:Na+ symporter, SSS family" }, { "name":"AAFP32_11915 sodium:solute symporter\tK03307 TC.SSS; solute:Na+ symporter, SSS family" }, { "name":"AAFP32_14260 sodium:solute symporter\tK03307 TC.SSS; solute:Na+ symporter, SSS family" }, { "name":"AAFP32_13900 sodium-dependent transporter\tK03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family" }, { "name":"AAFP32_00135 alanine\/glycine:cation symporter family protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"AAFP32_07450 alanine\/glycine:cation symporter family protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"AAFP32_10415 alanine\/glycine:cation symporter family protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"AAFP32_14910 alanine\/glycine:cation symporter family protein\tK03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family" }, { "name":"AAFP32_13980 bile acid:sodium symporter family protein\tK03453 TC.BASS; bile acid:Na+ symporter, BASS family" }, { "name":"AAFP32_01095 cytosine permease\tK03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family" }, { "name":"AAFP32_05870 NCS1 family nucleobase:cation symporter-1\tK03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family" } ] }, { "name":"99978 Cell growth", "children":[ { "name":"AAFP32_16390 R3H domain-containing nucleic acid-binding protein\tK06346 jag; spoIIIJ-associated protein" } ] }, { "name":"99993 Cell motility" }, { "name":"99995 Signaling proteins", "children":[ { "name":"AAFP32_06805 typA; (GenBank) translational GTPase TypA\tK06207 typA; GTP-binding protein" }, { "name":"AAFP32_09180 PhoH family protein\tK06217 phoH; phosphate starvation-inducible protein PhoH and related proteins" }, { "name":"AAFP32_06245 PhoH family protein\tK07175 phoH2; PhoH-like ATPase" }, { "name":"AAFP32_04455 YajQ family cyclic di-GMP-binding protein\tK09767 yajQ; cyclic-di-GMP-binding protein" } ] }, { "name":"99992 Structural proteins" }, { "name":"99994 Others", "children":[ { "name":"AAFP32_13960 phoU; (GenBank) phosphate signaling complex protein PhoU\tK02039 phoU; phosphate transport system protein" }, { "name":"AAFP32_00960 NAD(P)\/FAD-dependent oxidoreductase\tK07222 K07222; putative flavoprotein involved in K+ transport" }, { "name":"AAFP32_02365 NAD(P)\/FAD-dependent oxidoreductase\tK07222 K07222; putative flavoprotein involved in K+ transport" } ] } ] }, { "name":"09194 Poorly characterized", "children":[ { "name":"99996 General function prediction only", "children":[ { "name":"AAFP32_09425 GNAT family N-acetyltransferase\tK02348 elaA; ElaA protein" }, { "name":"AAFP32_03810 DEAD\/DEAH box helicase\tK06877 K06877; DEAD\/DEAH box helicase domain-containing protein" }, { "name":"AAFP32_07310 globin\tK06886 glbN; hemoglobin" }, { "name":"AAFP32_00760 MMPL family transporter\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"AAFP32_13205 efflux RND transporter permease subunit\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"AAFP32_14345 MMPL family transporter\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"AAFP32_14460 MMPL family transporter\tK06994 K06994; putative drug exporter of the RND superfamily" }, { "name":"AAFP32_02840 patatin-like phospholipase family protein\tK07001 K07001; NTE family protein" }, { "name":"AAFP32_07885 patatin-like phospholipase family protein\tK07001 K07001; NTE family protein" }, { "name":"AAFP32_08630 sufB; (GenBank) Fe-S cluster assembly protein SufB\tK09014 sufB; Fe-S cluster assembly protein SufB" }, { "name":"AAFP32_08625 sufD; (GenBank) Fe-S cluster assembly protein SufD\tK09015 sufD; Fe-S cluster assembly protein SufD" }, { "name":"AAFP32_02015 phosphotriesterase-related protein\tK07048 PTER; phosphotriesterase-related protein" }, { "name":"AAFP32_01915 YihY\/virulence factor BrkB family protein\tK07058 K07058; membrane protein" }, { "name":"AAFP32_09285 YhjD\/YihY\/BrkB family envelope integrity protein\tK07058 K07058; membrane protein" }, { "name":"AAFP32_13410 YihY\/virulence factor BrkB family protein\tK07058 K07058; membrane protein" }, { "name":"AAFP32_06565 SufE family protein\tK02426 sufE; cysteine desulfuration protein SufE" }, { "name":"AAFP32_02470 rhodanese-related sulfurtransferase\tK07146 K07146; UPF0176 protein" }, { "name":"AAFP32_13485 cytochrome c oxidase assembly protein\tK02351 K02351; putative membrane protein" }, { "name":"AAFP32_12415 LemA family protein\tK03744 lemA; LemA protein" }, { "name":"AAFP32_14455 YhgE\/Pip domain-containing protein\tK01421 yhgE; putative membrane protein" }, { "name":"AAFP32_14710 YhgE\/Pip domain-containing protein\tK01421 yhgE; putative membrane protein" }, { "name":"AAFP32_07690 phage holin family protein\tK08972 K08972; putative membrane protein" }, { "name":"AAFP32_06635 DUF368 domain-containing protein\tK08974 K08974; putative membrane protein" }, { "name":"AAFP32_03490 hypothetical protein\tK08982 K08982; putative membrane protein" }, { "name":"AAFP32_03030 DUF1304 domain-containing protein\tK08987 K08987; putative membrane protein" }, { "name":"AAFP32_06695 YchJ family metal-binding protein\tK09858 K09858; SEC-C motif domain protein" } ] }, { "name":"99997 Function unknown", "children":[ { "name":"AAFP32_01520 DUF255 domain-containing protein\tK06888 K06888; uncharacterized protein" }, { "name":"AAFP32_09415 alpha\/beta fold hydrolase\tK06889 K06889; uncharacterized protein" }, { "name":"AAFP32_10815 RNA-binding protein\tK06960 K06960; uncharacterized protein" }, { "name":"AAFP32_00790 GNAT family N-acetyltransferase\tK06975 K06975; uncharacterized protein" }, { "name":"AAFP32_07765 GNAT family N-acetyltransferase\tK06975 K06975; uncharacterized protein" }, { "name":"AAFP32_13520 GNAT family N-acetyltransferase\tK06975 K06975; uncharacterized protein" }, { "name":"AAFP32_10680 GNAT family N-acetyltransferase\tK06976 K06976; uncharacterized protein" }, { "name":"AAFP32_01045 cupin domain-containing protein\tK06995 K06995; uncharacterized protein" }, { "name":"AAFP32_14670 VOC family protein\tK06996 K06996; uncharacterized protein" }, { "name":"AAFP32_03050 ExeM\/NucH family extracellular endonuclease\tK07004 K07004; uncharacterized protein" }, { "name":"AAFP32_01510 pyridoxamine 5'-phosphate oxidase family protein\tK07005 K07005; uncharacterized protein" }, { "name":"AAFP32_14820 amidohydrolase family protein\tK07045 K07045; uncharacterized protein" }, { "name":"AAFP32_02450 TIGR01777 family oxidoreductase\tK07071 K07071; uncharacterized protein" }, { "name":"AAFP32_02475 DUF1731 domain-containing protein\tK07071 K07071; uncharacterized protein" }, { "name":"AAFP32_15170 FAD-binding dehydrogenase\tK07077 K07077; uncharacterized protein" }, { "name":"AAFP32_00770 TAXI family TRAP transporter solute-binding subunit\tK07080 K07080; uncharacterized protein" }, { "name":"AAFP32_14115 TAXI family TRAP transporter solute-binding subunit\tK07080 K07080; uncharacterized protein" }, { "name":"AAFP32_08540 sulfite exporter TauE\/SafE family protein\tK07090 K07090; uncharacterized protein" }, { "name":"AAFP32_10660 TSUP family transporter\tK07090 K07090; uncharacterized protein" }, { "name":"AAFP32_13365 sulfite exporter TauE\/SafE family protein\tK07090 K07090; uncharacterized protein" }, { "name":"AAFP32_13720 sulfite exporter TauE\/SafE family protein\tK07090 K07090; uncharacterized protein" }, { "name":"AAFP32_04015 PhoX family phosphatase\tK07093 K07093; uncharacterized protein" }, { "name":"AAFP32_03705 metallophosphoesterase\tK07098 K07098; uncharacterized protein" }, { "name":"AAFP32_06700 phosphoribosyltransferase\tK07101 K07101; uncharacterized protein" }, { "name":"AAFP32_02980 YeeE\/YedE family protein\tK07112 K07112; uncharacterized protein" }, { "name":"AAFP32_15125 SDR family NAD(P)-dependent oxidoreductase\tK07124 K07124; uncharacterized protein" }, { "name":"AAFP32_00485 MOSC N-terminal beta barrel domain-containing protein\tK07140 K07140; MOSC domain-containing protein" }, { "name":"AAFP32_15970 VWA domain-containing protein\tK07161 K07161; uncharacterized protein" }, { "name":"AAFP32_07930 hypothetical protein\tK07164 K07164; uncharacterized protein" }, { "name":"AAFP32_16400 yidD; (GenBank) membrane protein insertion efficiency factor YidD\tK08998 K08998; uncharacterized protein" }, { "name":"AAFP32_09780 bifunctional nuclease family protein\tK08999 K08999; uncharacterized protein" }, { "name":"AAFP32_05260 DUF501 domain-containing protein\tK09009 K09009; uncharacterized protein" }, { "name":"AAFP32_07005 UPF0182 family protein\tK09118 K09118; uncharacterized protein" }, { "name":"AAFP32_01540 DUF1684 domain-containing protein\tK09164 K09164; uncharacterized protein" }, { "name":"AAFP32_04085 PH domain-containing protein\tK09167 K09167; uncharacterized protein" }, { "name":"AAFP32_15935 carbon monoxide dehydrogenase subunit G\tK09386 K09386; uncharacterized protein" }, { "name":"AAFP32_08735 YciI family protein\tK09780 K09780; uncharacterized protein" }, { "name":"AAFP32_06585 DUF808 domain-containing protein\tK09781 K09781; uncharacterized protein" }, { "name":"AAFP32_13625 DUF456 domain-containing protein\tK09793 K09793; uncharacterized protein" }, { "name":"AAFP32_07935 yaaA; (GenBank) peroxide stress protein YaaA\tK09861 K09861; uncharacterized protein" }, { "name":"AAFP32_06105 crosslink repair DNA glycosylase YcaQ family protein\tK09927 K09927; uncharacterized protein" }, { "name":"AAFP32_12815 antibiotic biosynthesis monooxygenase\tK09932 K09932; uncharacterized protein" }, { "name":"AAFP32_09205 DUF4870 domain-containing protein\tK09940 K09940; uncharacterized protein" }, { "name":"AAFP32_05665 nuclear transport factor 2 family protein\tK09958 K09958; uncharacterized protein" }, { "name":"AAFP32_03390 DUF779 domain-containing protein\tK09959 K09959; uncharacterized protein" }, { "name":"AAFP32_02325 DUF1989 domain-containing protein\tK09967 K09967; uncharacterized protein" }, { "name":"AAFP32_02685 HutD family protein\tK09975 K09975; uncharacterized protein" }, { "name":"AAFP32_14210 DUF47 domain-containing protein\tK07220 K07220; uncharacterized protein" }, { "name":"AAFP32_10635 YlxR family protein\tK07742 ylxR; uncharacterized protein" } ] } ] } ] } ] }